Edit

Ellenberg Group

Cell division and nuclear organisation

Publications

REMBI: recommended metadata for biological images-enabling reuse of microscopy data in biology.

Sarkans U, Chiu W, Collinson L, Darrow MC, Ellenberg J, Grunwald D, Hériché JK, Iudin A, Martins GG, Meehan T, Narayan K, Patwardhan A, Russell MRG, Saibil HR, Strambio-De-Castillia C, Swedlow JR, Tischer C, Uhlmann V, Verkade P, Barlow M, Bayraktar O, Birney E, Catavitello C, Cawthorne C, Wagner-Conrad S, Duke E, Paul-Gilloteaux P, Gustin E, Harkiolaki M, Kankaanpää P, Lemberger T, McEntyre J, Moore J, Nicholls AW, Onami S, Parkinson H, Parsons M, Romanchikova M, Sofroniew N, Swoger J, Utz N, Voortman LM, Wong F, Zhang P, Kleywegt GJ, Brazma A

Nature methods 2021

34021280. doi:10.1038/s41592-021-01166-8.

Publisher Correction: LifeTime and improving European healthcare through cell-based interceptive medicine.

Rajewsky N, Almouzni G, Gorski SA, Aerts S, Amit I, Bertero MG, Bock C, Bredenoord AL, Cavalli G, Chiocca S, Clevers H, De Strooper B, Eggert A, Ellenberg J, Fernández XM, Figlerowicz M, Gasser SM, Hubner N, Kjems J, Knoblich JA, Krabbe G, Lichter P, Linnarsson S, Marine JC, Marioni JC, Marti-Renom MA, Netea MG, Nickel D, Nollmann M, Novak HR, Parkinson H, Piccolo S, Pinheiro I, Pombo A, Popp C, Reik W, Roman-Roman S, Rosenstiel P, Schultze JL, Stegle O, Tanay A, Testa G, Thanos D, Theis FJ, Torres-Padilla ME, Valencia A, Vallot C, van Oudenaarden A, Vidal M, Voet T, LifeTime Community Working Groups

Nature 2021

33731935. doi:10.1038/s41586-021-03287-8.

Life time and improving European healthcare through cell-based interceptive medicine.

Rajewsky N, Almouzni G, Gorski SA, Aerts S, Amit I, Bertero MG, Bock C, Bredenoord AL, Cavalli G, Chiocca S, Clevers H, De Strooper B, Eggert A, Ellenberg J, Fernández XM, Figlerowicz M, Gasser SM, Hubner N, Kjems J, Knoblich JA, Krabbe G, Lichter P, Linnarsson S, Marine JC, Marioni J, Marti-Renom MA, Netea MG, Nickel D, Nollmann M, Novak HR, Parkinson H, Piccolo S, Pinheiro I, Pombo A, Popp C, Reik W, Roman-Roman S, Rosenstiel P, Schultze JL, Stegle O, Tanay A, Testa G, Thanos D, Theis FJ, Torres-Padilla ME, Valencia A, Vallot C, van Oudenaarden A, Vidal M, Voet T

Nature 2020

32894860. doi:10.1038/s41586-020-2715-9.

Chemogenetic control of nanobodies.

Farrants H, Tarnawski M, Müller TG, Otsuka S, Hiblot J, Koch B, Kueblbeck M, Kräusslich HG, Ellenberg J, Johnsson K

Nature methods 2020

32066961. doi:10.1038/s41592-020-0746-7.

Integrating imaging and omics: computational methods and challenges.

Heriche JK, Alexander S, Ellenberg J

ANNUAL REVIEW OF BIOMEDICAL DATA SCIENCE, VOL 2, 2019 2019

doi:10.1146/annurev-biodatasci-080917-013328.

Quantitative live and super-resolution microscopy of mitotic chromosomes

Walther N, Ellenberg J

2018

doi:10.1016/bs.mcb.2018.03.014.

Fast, robust and precise 3D localization for arbitrary point spread functions.

Yiming Li, Markus Mund, Philipp Hoess, Ulf Matti, Bianca Nijmeijer, Vilma Jimenez Sabinina, Jan Ellenberg, Ingmar Schoen, Jonas Ries

2017

doi:10.1101/172643.

A proposal for validation of antibodies.

Uhlen M, Bandrowski A, Carr S, Edwards A, Ellenberg J, Lundberg E, Rimm DL, Rodriguez H, Hiltke T, Snyder M, Yamamoto T

Nature methods 2016

27595404. doi:10.1038/nmeth.3995.

An actin-dependent spindle position checkpoint ensures the asymmetric division in mouse oocytes (Retraction of vol 6, 7784, 2015)

Metchat A, Eguren M, Hossain JM, Politi AZ, Huet S, Ellenberg J

NATURE COMMUNICATIONS 2015

doi:10.1038/ncomms9124.

FUN-L: Gene prioritization for RNAi screens.

Lees JG, Hériché JK, Morilla I, Fernández JM, Adler P, Krallinger M, Vilo J, Valencia A, Ellenberg J, Ranea JA, Orengo C

Bioinformatics (Oxford, England) 2015

25667547. doi:10.1093/bioinformatics/btv073.

Mitotic Lamin disassembly is triggered by a lipid-mediated mitotic Lipin signaling pathway

Mall M, Walter T, Gorjanacz M, Ellenberg J, Mattaj IW

MOLECULAR BIOLOGY OF THE CELL 2011

doi:.

Systematic analysis of human protein complexes identifies chromosome segregation proteins

Hutchins JR, Toyoda Y, Hegemann B, Poser I, Hériché JK, Sykora MM, Augsburg M, Hudecz O, Buschhorn BA, Bulkescher J, Conrad C, Comartin D, Schleiffer A, Sarov M, Pozniakovsky A, Slabicki MM, Schloissnig S, Steinmacher I, Leuschner M, Ssykor A, Lawo S, Pelletier L, Stark H, Nasmyth K, Ellenberg J, Durbin R, Buchholz F, Mechtler K, Hyman AA, Peters JM

Science (New York, N.Y.) 2010

20360068. doi:10.1126/science.1181348.

Visualization of image data from cells to organisms

Walter T, Shattuck DW, Baldock R, Bastin ME, Carpenter AE, Duce S, Ellenberg J, Fraser A, Hamilton N, Pieper S, Ragan MA, Schneider JE, Tomancak P, Hériché JK

Nature methods 2010

20195255. doi:10.1038/nmeth.1431.

A genome wide RNAI screen by time lapse microscopy in order to identify mitotic genes - Computational aspects and challenges.

Walter T, Held M, Neumann B, Heriche JK, Conrad C, Pepperkok R, Ellenberg J

2008 IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING: FROM NANO TO MACRO, VOLS 1-4 2008

doi:10.1109/ISBI.2008.4540999.

Nuclear envelope

Dultz E, Ellenberg J

CURRENT BIOLOGY 2007

17339009. doi:10.1016/j.cub.2006.12.035.

Time-lapse microscopy-based genome wide RNAI screening in live human cells.

Neumann B, Held M, Liebel U, Erfle H, Rogers P, Pepperkok R, Ellenberg J

2006 3RD IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING: MACRO TO NANO, VOLS 1-3 2006

doi:10.1109/ISBI.2006.1624898.

Photobleaching techniques to study mobility and molecular dynamics of proteins in live cells: FRAP, iFRAP and FLIP

Rabut G, Ellenberg, J

2005

doi:.

Dynamics of nuclear envelope proteins during the cell cycle in mammalian cells

Ellenberg J

2002

doi:.

Fluorescence photobleaching techniques

Ellenberg J, Lippincott-Schwartz J

1997

doi:.


Edit