EMBL Events

EMBL delivers world-class courses, conferences and workshops at the forefront of molecular life science and its applications.

Browse upcoming events below, or learn more about training at EMBL.

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26 January - 27 January 2022

The next generation in infection biology

26 January 20222022ConferenceVirtual

Pedro Beltrao, Maria Bernabeu, Jan Kosinski, Eva Kowalinski, Nassos Typas

OverviewOrganisers and SpeakersParticipating Organisations OverviewOrganisers and SpeakersParticipating OrganisationsProgrammePractical InformationSponsors Overview Conference Overview Infectious diseases are among the most prevalent causes of human illness and death in the world. Pathogens infect humans and all life forms on Earth, being able to cross species barriers, thereby adversely impacting human and planetary health. Fundamental research in Infection Biology is urgently needed to find therapies for longstanding and emerging infectious diseases.  The EMBL Conference: The Next Generation in Infection Biology is a platform for late-stage postdoctoral scientists in the field of infection biology to present their work and connect with the leading European institutions in infection biology. The speakers will be chosen for their track record of research accomplishments and their high-reaching future plans. The audience will have the unique...

EMBL Conference

Virtual

Registration
Closed
Abstract submission
Closed

26 January 2022

Guide to exploring genes and genomes with Ensembl

26 January 20222022WebinarVirtual

Aleena Mushtaq

This webinar will provide a brief overview to the Ensembl browser and demonstrate how you can access information about genes or genomes of your interest. We will also showcase the data types and tools available at Ensembl which can help your research. This webinar will provide a brief overview to the Ensembl browser and demonstrate how you can access information about genes or genomes of your interest. We will also showcase the data types and tools available at Ensembl which can help your research.

Webinar

Virtual


26 January 2022

EMBL EBI Sanger seminar series John Marioni

26 January 20222022EBI Internal SeminarOther

EMBL- EBI Speaker – John Marioni Talk title – “Approaches for integrating multi-modal single-cell datasets". Sanger Speaker – None this month. EMBL- EBI Speaker– John Marioni Talk title – “Approaches for integrating multi-modal single-cell datasets". Sanger Speaker – None this month. Join Zoom Meeting https://embl-org.zoom.us/j/93511484734?pwd=SWduSVBYMEgrb1Q4U0R6aG95endH…] Meeting ID: 935 1148 4734 Passcode: 807266 One tap mobile +496950500951,,93511484734#,,,,*807266# Germany +496950500952,,93511484734#,,,,*807266# Germany Dial by your location +49 69 5050 0951 Germany +49 69 5050 0952 Germany +49 695 050 2596 Germany +49 69 7104 9922 Germany +49 69 3807 9883 Germany +49 69 3807 9884 Germany +39 069 480 6488 Italy +39 020 066 7245 Italy +39 021 241 28 823 Italy +34 917 873 431 Spain +34 84 368 5025 Spain +34 91 787 0058 Spain +33 1 7037 9729 France +33 1 7095 0103 France +33 1 7095 0350 France +33 1 8699 5831 France +33 1 7037 2246 France Meeting ID: 935 1148 4734 Passcode: 807266 Find your local number:...

EBI Internal Seminar

Other

Registration
Will open shortly

31 January - 4 February 2022

SymbNET: from metagenomics to metabolic interactions

31 January 20222022CourseVirtual

Jane Reynolds

Run jointly with SymbNET, this virtual course will introduce and discuss state-of-the art tools for understanding microbial communities (metagenomics) and discovering and analysing species interactions in gut microbial communities, with a particular focus on metabolic interactions. The goal will be to enable users to integrate experimental results with the latest computational methods to move from correlative analyses of host-microbiome systems towards mechanistic understanding, using a combination of introductory lectures and hands-on training materials. Virtual course Participants will learn via a mix of pre-recorded lectures, live presentations, trainer Q&A sessions and hands-on training. Live sessions will be delivered using Zoom with additional support and communication via Slack.  Computational practicals will run on EMBL-EBI's virtual training infrastructure, meaning participants will not require access to a powerful computer or install complex software on their machines. Participants will need to be available between the hours of 09:00-17:30 GMT each day of the course. Trainers will be available to assist, answer questions, and further explain the analysis during these times. About SymbNET SymbNET is a European network for host-microbe interactions research, funded by the European Union’s Horizon 2020 research and innovation programme. The project coordinated by FCG-IGC (Instituto Gulbenkian de Ciência, Portugal), brings together the world-leading research institutions EMBL (European Molecular Biology Laboratory, Germany),  CAU (Christian-Albrechts-Universität zu Kiel, Germany),  and UNIL (Université de Lausanne,  Switzerland), and a local widening partner ITQB NOVA (Instituto de Tecnologia Química e Biológica, Portugal). This project has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement Nº 952537    Run jointly with SymbNET, this virtual course will introduce and discuss state-of-the art tools for understanding microbial communities (metagenomics) and discovering and analysing species interactions in gut microbial communities, with a particular focus on metabolic interactions. The goal will be to enable users to integrate experimental results with the latest computational methods to move from correlative analyses of host-microbiome systems towards mechanistic understanding, using a combination of introductory lectures and hands-on training materials. Virtual course Participants will learn via a mix of pre-recorded lectures, live presentations, trainer Q&A sessions and hands-on training. Live sessions will be delivered using Zoom with additional support and communication via Slack. Computational practicals will run on EMBL-EBI's virtual training infrastructure, meaning...

Course

Virtual

Registration
Closed

31 January - 4 February 2022

Exploratory analysis of biological data: data carpentry

31 January 20222022CourseVirtual

Renato Alves, Fotis E. Psomopoulos, Christian Schudoma

The missing step between data collection and research progress is a lack of training for researchers in crucial skills for effectively managing and analysing large amounts of data. This hands-on workshop teaches researchers the fundamental data skills they need to conduct their work and provides high-quality, domain-specific training covering the full lifecycle of data-driven research. The domain-specific approach allows participants to tailor the data, content, and tools to reflect the specific data and analysis needs of different areas. OverviewSpeakers and TrainersProgrammePractical InformationSponsors Overview EMBL is committed to sharing research advances and sustaining scientific interaction throughout the coronavirus pandemic. We are delighted to announce that the course is going virtual and invite you to join us online. Course Overview The missing step between data collection and research progress is a lack of training for researchers in crucial skills for effectively managing and analysing large amounts of data. This hands-on workshop teaches researchers the fundamental data skills they need to conduct their work and provides high-quality, domain-specific training covering the full lifecycle of data-driven research. The domain-specific approach allows participants to tailor the data, content, and tools to reflect the specific data and analysis needs of different areas. Audience The course is aimed at graduate...

EMBL Course

Virtual

Registration
Closed

2 February 2022

MetaboLights: the home for metabolomics experiments and derived information

2 February 20222022WebinarVirtual

Thomas Payne

MetaboLights is a database for metabolomics experiments and derived information. The database is cross-species, cross-technique and covers metabolite structures and their reference spectra as well as their biological roles, locations and concentrations, and experimental data from metabolic experiments. It is the recommended metabolomics data repository for several leading journals. This webinar will introduce metabolomics data and the MetaboLights resource, including how to submit, access and search relevant data. MetaboLights is a database for metabolomics experiments and derived information. The database is cross-species, cross-technique and covers metabolite structures and their reference spectra as well as their biological roles, locations and concentrations, and experimental data from metabolic experiments. It is the recommended metabolomics data repository for several leading journals. This webinar will introduce metabolomics data and the MetaboLights resource, including how to submit, access and search relevant data.

Webinar

Virtual


3 February 2022

Automated annotation in UniProt

3 February 20222022WebinarVirtual

Pedro Raposo, Hermann Zellner

UniProt is a high quality, comprehensive protein resource in which the core activity is the expert review and annotation of proteins where the function has been experimentally investigated. At the same time, the UniProt database contains large numbers of proteins which are predicted to exist from gene models, but which do not have associated experimental evidence indicating their function. UniProt commits significant resources to developing computational methods for functional annotation of these predicted proteins based on the data in entries that have gone through the expert review process. We will describe the two main automated annotation systems currently in use. First, UniRule, which is an established UniProt system in which curators manually develop rules for annotation. Second, ARBA (Association-Rule-Based Annotator), which is a multi-class learning system which uses rule mining techniques to generate concise annotation models. ARBA employs a data exclusion algorithm that censors data not suitable for computational annotation, and generates human-readable rules for each UniProt release. We will also introduce UniFIRE, an open source software that enables researchers to annotate their own protein dataset by using the above mentioned annotation systems. In order to provide an easy and straightforward way to download and set up this tool we have containerised UniFIRE together with all its dependencies and the latest set of UniRule and ARBA rules. In this webinar, we will show how to create functional predictions for protein sequences by using this container image. UniProt is a high quality, comprehensive protein resource in which the core activity is the expert review and annotation of proteins where the function has been experimentally investigated. At the same time, the UniProt database contains large numbers of proteins which are predicted to exist from gene models, but which do not have associated experimental evidence indicating their function. UniProt commits significant resources to developing computational methods for functional annotation of these predicted proteins based on the data in entries that have gone through the expert review process. We will describe the two main automated annotation systems currently in use. First, UniRule, which is an established UniProt system in which curators manually develop rules for annotation. Second, ARBA (Association-Rule-Based Annotator), which is a multi-class learning system which uses rule mining...

Webinar

Virtual


9 February - 11 February 2022

The epitranscriptome

9 February 20222022ConferenceVirtual

Michaela Frye, V. Narry Kim, Dónal O'Carroll

OverviewSpeakersPreliminary Programme OverviewSpeakersPreliminary ProgrammePractical InformationSponsors Overview Conference Overview The regulation of the transcriptome is key to cellular processes that underpin cell biology, development and tissue function. All classes of cellular RNA are subject to post-transcriptional modification, be it by direct chemical modification, editing or non-templated nucleotide additions. It is now emerging that the modification status of the transcriptome is dynamic and responsive to environmental/developmental cues. Together, this has elicited the realisation of an ‘epitranscriptome’ where post-transcriptional RNA modification coupled with recruitment of effector RNA binding proteins dynamically regulates genomic output. Importantly, mutations in setting or reading RNA modifications are causative of many human diseases or congenital disorders. This meeting aims to explore all aspects of this...

EMBO Workshop

Virtual

Registration
02 February 2022
Abstract submission
Closed

9 February 2022

Exploring genotype-phenotype data using the GWAS Catalog

9 February 20222022WebinarVirtual

The GWAS Catalog is the primary resource of genotype-phenotype associations identified through genome-wide association studies. GWAS Catalog data are publicly available in a consistent, searchable, and visualisable format, which is easily integrated with other resources. Uses for the data include prioritising candidate loci, exploring disease mechanisms, predicting risk of disease, identifying new drug targets, gathering statistics on traits or populations of interest, and downloading full summary data for use in downstream analyses.  This webinar will include a brief introduction to the GWAS Catalog and a demonstration of our web-based search interface, focusing on the most common use cases.  The GWAS Catalog is the primary resource of genotype-phenotype associations identified through genome-wide association studies. GWAS Catalog data are publicly available in a consistent, searchable, and visualisable format, which is easily integrated with other resources. Uses for the data include prioritising candidate loci, exploring disease mechanisms, predicting risk of disease, identifying new drug targets, gathering statistics on traits or populations of interest, and downloading full summary data for use in downstream analyses. This webinar will include a brief introduction to the GWAS Catalog and a demonstration of our web-based search interface, focusing on the most common use cases.

Webinar

Virtual


14 February - 18 February 2022

CABANA Workshop: Bioinformatics approaches to viruses and genomic surveillance

14 February 20222022CourseVirtual

Juanita Riveros

This workshop will provide training on the use of bioinformatics tools to understand viral pathogens’ sequencing data. Trainees will receive training on viral genome assembly, comparative viral genomics, phylodynamics, metaviromics and downstream applications of this data in research and applied contexts, including public health and policy.   This workshop will provide training on the use of bioinformatics tools to understand viral pathogens’ sequencing data. Trainees will receive training on viral genome assembly, comparative viral genomics, phylodynamics, metaviromics and downstream applications of this data in research and applied contexts, including public health and policy.

Course

Virtual

Registration
Closed

21 February - 2 March 2022

Bioinformatics resources for protein biology

21 February 20222022CourseVirtual

Jane Reynolds

Are you aware of the wide range of protein data resources that can easily be accessed and explored to enhance your research? Do you want to know more about the sequence of your protein and its functions? Wondered whether a structure of your protein exists and how to explore it? Want to know more about the potential complexes and reaction pathways your protein of interest is involved in, giving you a better overview of its biological context? This short virtual course will introduce you to data resources and tools developed by EMBL-EBI that can help you in your protein studies. This course will take place from 21 to 23 February and on 2 March. During the first three days you will learn about how to browse, retrieve and use EMBL-EBI protein data in theory. Those who are interested in learning more about programmatic access to EMBL-EBI protein resources can attend an optional section on this topic on the afternoon of 22 February. For an introduction to the concept of web services and how you can use them to access the tools and data available programmatically, please watch this EMBL-EBI, programatically webinar. You will be provided exercises for each resource that you will work through on your own in the following week, with remote trainer support available if needed. We will then meet again on 2 March to discuss issues that occurred while working through the material in more detail. All participants will be asked to pre-record a short presentation (three minutes) about their research work as part of the course. These will provide an opportunity to share your research with the other participants and provide a forum for discussion. Further details will be provided to participants once registrations have closed. This course will be run virtually and delivered over Zoom, with additional text communication over Slack.  In order to make the most out of the course, you should make sure to have a stable internet connection throughout the course.   Are you aware of the wide range of protein data resources that can easily be accessed and explored to enhance your research? Do you want to know more about the sequence of your protein and its functions? Wondered whether a structure of your protein exists and how to explore it? Want to know more about the potential complexes and reaction pathways your protein of interest is involved in, giving you a better overview of its biological context? This short virtual course will introduce you to data resources and tools developed by EMBL-EBI that can help you in your protein studies. This course will take place from 21 to 23 February and on 2 March. During the first three days you will learn about how to browse, retrieve and use EMBL-EBI protein data in theory. Those who are interested in learning more about programmatic access to EMBL-EBI protein resources can attend an optional section on...

Course

Virtual

Registration
Closed

21 February - 25 February 2022

Introduction to RNA-seq and functional interpretation

21 February 20222022CourseVirtual

Meredith Willmott

Gain an introduction to the technology, data analysis, tools, and resources used in RNA sequencing and transcriptomics. The content will provide a broad overview of the subject area, and introduce participants to basic analysis of transcriptomics data using the command line. It will also highlight key public data repositories and methodologies that can be used to start the biological interpretation of expression data. Topics will be delivered using a mixture of lectures, practical exercises, and open discussions. Computational work during the course will use small, example data-sets; and there will be no opportunity to analyse personal data. Virtual course Participants will learn via a mix of pre-recorded lectures, live presentations, and trainer Q&A sessions. Practical experience will be developed through group activities and trainer-led computational exercises. Live sessions will be delivered using Zoom with additional support and communication via Slack.  Pre-recorded material will be made available to registered participants prior to the start of the course and in the week before the course, there will be a brief induction session. Computational practicals will run on EMBL-EBI's virtual training infrastructure, meaning participants will not require access to a powerful computer or install complex software on their own machines. Participants will need to be available between the hours of 09:30-16:00 GMT each day of the course. Trainers will be available to assist, answer questions, and further explain the analysis during these times. Gain an introduction to the technology, data analysis, tools, and resources used in RNA sequencing and transcriptomics. The content will provide a broad overview of the subject area, and introduce participants to basic analysis of transcriptomics data using the command line. It will also highlight key public data repositories and methodologies that can be used to start the biological interpretation of expression data. Topics will be delivered using a mixture of lectures, practical exercises, and open discussions. Computational work during the course will use small, example data-sets; and there will be no opportunity to analyse personal data. Virtual course Participants will learn via a mix of pre-recorded lectures, live presentations, and trainer Q&A sessions. Practical experience will be developed through group activities and trainer-led computational exercises. Live sessions will...

Course

Virtual

Registration
Closed

22 February - 25 February 2022

Integrative analysis of multi-omics data

22 February 20222022CourseEMBL Heidelberg

Wolfgang Huber, Oliver Stegle, Britta Velten

Experimental designs in basic biology research and biomedicine increasingly involve the use of multiple omics technologies to characterise a set of samples e.g. genomic variants, epigenetic marks, transcriptome, proteome, metabolome, functional assays, imaging. This is true for both bulk and single cell analyses. Therefore, data analysis techniques are required that are able to cope with such data in an efficient and generalisable manner. Thus, the proposed advanced course addresses one of the major data challenges scientists face today. Its core objective is to convey the conceptual and mathematical foundations that underpin integrative multimodal data analysis strategies and the practical trade-offs of different methods. OverviewSpeakers and TrainersProgrammePractical InformationSponsors Overview Proof of COVID-19 vaccination or recovery is required to attend this on-site course. Please see EMBL’s COVID-19 safety policy for on-site events. Course Overview Multi-omics studies that combine genomics, transcriptome, proteome and other modalities are increasingly common in fundamental biology research and biomedicine. Using multi-omics experimental designs at bulk or single-cell resolution can help identifying novel biomarkers or reveal insights into biological mechanisms. This course addresses the conceptual and mathematical foundations of state-of-the-art methods for analyzing the data that results from multi-omics studies. The course will provide an overview of advanced applications of multi-omics methods, provide insights into how to select the most appropriate methods and convey practical...

EMBO Practical Course

EMBL Heidelberg

Registration
Closed

3 March 2022

Identifying tumor cells at the single cell level through machine learning

3 March 20222022WebinarVirtual

Altuna Akalin

Tumours are highly complex tissues composed of cancerous cells, surrounded by a heterogeneous cellular microenvironment. A tumor’s response to treatments is governed by an interaction of the cancer cell’s intrinsic factors with external influences of the tumor microenvironment. Disentangling the heterogeneity within a tumor is a crucial step in the development and utilisation of effective cancer therapies. The single cell sequencing technology enables an effective molecular characterisation of single cells within the tumor. This technology can help deconvolute heterogeneous tumor samples and thus revolutionise personalised medicine. However, a governing challenge in cancer single cell analysis is cell annotation, that is, the assignment of a particular cell type or a cell state to each sequenced cell. The identification of tumor cells within single cell or spatial sequencing experiments remains a critical and limiting step for research, clinical, and commercial applications. In this webinar, we will discuss these challenges and a novel machine learning pipeline aimed at performing automatic annotation and distinguishing tumor cells from normal cells at the single cell level. About the speaker Altuna Akalin is a bioinformatics scientist and the head of Bioinformatics and Omics Data Science Platform at the Berlin Institute of Medical Systems Biology, Max Delbrück Center (MDC) in Berlin. He has developed computational methods for analysing and integrating large-scale genomics data sets since 2002. He uses machine learning and statistics to uncover biological patterns, for example those related to disease state and type. In his current work he uses complex molecular signatures to provide decision support systems for disease diagnostics and biomarker discovery. Additionally, he is actively involved in organising and teaching at computational genomics courses. Tumours are highly complex tissues composed of cancerous cells, surrounded by a heterogeneous cellular microenvironment. A tumor’s response to treatments is governed by an interaction of the cancer cell’s intrinsic factors with external influences of the tumor microenvironment. Disentangling the heterogeneity within a tumor is a crucial step in the development and utilisation of effective cancer therapies. The single cell sequencing technology enables an effective molecular characterisation of single cells within the tumor. This technology can help deconvolute heterogeneous tumor samples and thus revolutionise personalised medicine. However, a governing challenge in cancer single cell analysis is cell annotation, that is, the assignment of a particular cell type or a cell state to each sequenced cell. The identification of tumor cells within single cell or spatial sequencing experiments...

Webinar

Virtual


6 March - 9 March 2022

Biological oscillators: design, mechanism, function

6 March 20222022ConferenceEMBL Heidelberg

Alexander Aulehla, Hanspeter Herzel, Eve Marder, Ueli Schibler

OverviewSpeakersPreliminary Programme OverviewSpeakersPreliminary ProgrammePractical InformationSponsorsAbout Overview This conference will take place at EMBL Heidelberg, with the option to attend virtually. Proof of COVID-19 vaccination or recovery is required for on-site attendance. Please see EMBL’s COVID-19 safety policy for on-site events.  Conference Overview Are you interested in oscillatory phenomena and biological dynamics? At this symposium, multiple disciplines will come together in order to discuss common mechanisms underlying the generation of oscillations. This meeting provides a unique platform for the emerging new community working at the interface between quantitative biology, complex oscillatory systems, and physics. Oscillations are abundant – from hormonal oscillations with periods of days and months, to genetic fluctuations in the range of hours (circadian clock, embryonic...

EMBO | EMBL Symposium

EMBL Heidelberg

Registration
27 February 2022
Abstract submission
Closed

6 March - 9 March 2022

Biological oscillators: design, mechanism, function

6 March 20222022ConferenceVirtual

Alexander Aulehla, Hanspeter Herzel, Eve Marder, Ueli Schibler

OverviewSpeakersPreliminary Programme OverviewSpeakersPreliminary ProgrammePractical InformationSponsorsAbout Overview This conference will take place at EMBL Heidelberg, with the option to attend virtually. Proof of COVID-19 vaccination or recovery is required for on-site attendance. Please see EMBL’s COVID-19 safety policy for on-site events.  Conference Overview Are you interested in oscillatory phenomena and biological dynamics? At this symposium, multiple disciplines will come together in order to discuss common mechanisms underlying the generation of oscillations. This meeting provides a unique platform for the emerging new community working at the interface between quantitative biology, complex oscillatory systems, and physics. Oscillations are abundant – from hormonal oscillations with periods of days and months, to genetic fluctuations in the range of hours (circadian clock, embryonic...

EMBO | EMBL Symposium

Virtual

Registration
27 February 2022
Abstract submission
Closed

6 March - 11 March 2022

Analysis and integration of transcriptome and proteome data

6 March 20222022CourseEMBL Heidelberg

Vladimir Benes, Raffaele Calogero, Jeroen Krijgsveld, Lennart Martens

OverviewSpeakers and TrainersPreliminary Programme OverviewSpeakers and TrainersPreliminary ProgrammePractical InformationSponsors Overview Proof of COVID-19 vaccination or recovery is required to attend this on-site course. Please see EMBL’s COVID-19 safety policy for on-site events. Course Overview Systems biology is a still expanding field of research aiming to understand at the molecular level how cells, tissues and organisms operate in their biological context. Among the key technologies driving this forward are next-generation sequencing and proteomics, as they provide powerful means to determine global expression levels of genes and proteins. Both fields have matured to a degree that they have now become accessible to researchers in many areas of biology. During this course, participants will gain theoretical insight in the structure of sequencing and proteomic data, and they will receive training in data analysis for...

EMBL Course

EMBL Heidelberg

Registration
Closed

7 March - 11 March 2022

Single-cell RNA-seq analysis using Galaxy

7 March 20222022CourseVirtual

Sophie Spencer

This course utilises Galaxy pipelines, an online open-access resource that allows even the most computer-phobic bench scientists to analyse their biological data. Participants will be guided through the droplet-based scRNA-seq analysis pipelines from raw reads to trajectories, for mammalian and plant genomes. Please note that although participants will not be able to use their own data during the course practicals, there will be ample time to discuss their research and ideas with both course participants and trainers.  As part of this, participants will present lightning talks on their research topics. Near the end of the course, participants will engage in small group discussions about their research challenges and problems with each other and the trainers at the ‘Talk with trainers’. Virtual course Participants will learn via a mix of pre-recorded lectures, live presentations, and trainer Q&A sessions. Practical experience will be developed through group activities and trainer-led computational exercises. Live sessions will be delivered using Zoom with additional support and communication via Slack.  Pre-recorded material will be made available to registered participants prior to the start of the course and in the week before the course there will be a brief induction session. Computational practicals will run on EMBL-EBI’s virtual training infrastructure, meaning participants will not require access to a powerful computer or install complex software on their own machines. Participants will need to be available between the hours of 09:00 - 17:00 GMT each day of the course. Trainers will be available to assist, answer questions, and further explain the analysis during these times. This course utilises Galaxy pipelines, an online open-access resource that allows even the most computer-phobic bench scientists to analyse their biological data. Participants will be guided through the droplet-based scRNA-seq analysis pipelines from raw reads to trajectories, for mammalian and plant genomes. Please note that although participants will not be able to use their own data during the course practicals, there will be ample time to discuss their research and ideas with both course participants and trainers. As part of this, participants will present lightning talks on their research topics. Near the end of the course, participants will engage in small group discussions about their research challenges and problems with each other and the trainers at the ‘Talk with trainers’. Virtual course Participants will learn via a mix of pre-recorded lectures, live presentations, and...

Course

Virtual

Registration
Closed

13 March - 16 March 2022

From 3D light to 3D electron microscopy

13 March 20222022ConferenceVirtual

Raffaella Carzaniga, Lucy Collinson, Alexandra Elli, Chris Guérin, Anneke Kremer, Saskia Lippens, Paolo Ronchi, Yannick Schwab

OverviewSpeakers and OrganisersPreliminary Programme OverviewSpeakers and OrganisersPreliminary ProgrammePractical InformationSponsors Overview This conference will take place at EMBL Heidelberg, with the option to attend virtually. Proof of COVID-19 vaccination or recovery is required for on-site attendance. Please see EMBL’s COVID-19 safety policy for on-site events.  Conference Overview The event is jointly organised by EMBL, ZEISS, The Francis Crick Institute and the VIB Ghent. Life happens in 3D – and understanding biological context in the three dimensions has been a major driver in the past decades in both light and electron microscopy. Today the trend towards 3D continues with large volume imaging and highest resolution with modern light and electron microscopy-based techniques now enabling previously impossible insights into functional and structural biology. Correlative microscopy can combine a large variety of...

EMBL Conference

Virtual

Registration
06 March 2022
Abstract submission
Closed

13 March - 16 March 2022

From 3D light to 3D electron microscopy

13 March 20222022ConferenceEMBL Heidelberg

Raffaella Carzaniga, Lucy Collinson, Alexandra Elli, Chris Guérin, Anneke Kremer, Saskia Lippens, Paolo Ronchi, Yannick Schwab

OverviewSpeakers and OrganisersPreliminary Programme OverviewSpeakers and OrganisersPreliminary ProgrammePractical InformationSponsors Overview This conference will take place at EMBL Heidelberg, with the option to attend virtually. Proof of COVID-19 vaccination or recovery is required for on-site attendance. Please see EMBL’s COVID-19 safety policy for on-site events.  Conference Overview The event is jointly organised by EMBL, ZEISS, The Francis Crick Institute and the VIB Ghent. Life happens in 3D – and understanding biological context in the three dimensions has been a major driver in the past decades in both light and electron microscopy. Today the trend towards 3D continues with large volume imaging and highest resolution with modern light and electron microscopy-based techniques now enabling previously impossible insights into functional and structural biology. Correlative microscopy can combine a large variety of...

EMBL Conference

EMBL Heidelberg

Registration
06 March 2022
Abstract submission
Closed

13 March - 18 March 2022

Extracellular vesicles: from biology to biomedical applications

13 March 20222022CourseEMBL Heidelberg

An Hendrix, Cecilia Lässer, Esther Nolte-’t Hoen, Guillaume Van Niel

This course is intended for PhD students and Postdoctoral researchers who are interested in learning how to work with extracellular vesicles and know more about their biomedical applications. OverviewSpeakers and TrainersPreliminary ProgrammePractical InformationSponsors Overview Proof of COVID-19 vaccination or recovery is required to attend this on-site course. Please see EMBL’s COVID-19 safety policy for on-site events. Course Overview A rapidly increasing number of researchers aim to purify and identify extracellular vesicles and many methodologies to isolate and analyse these vesicles are available and have been implemented. This course will cover the basics, possibilities and limitations of different purification and characterisation techniques and will address strategies to understand their role in biomedical applications. Audience This course is intended for PhD students and Postdoctoral researchers who are interested in learning how to work with extracellular vesicles and know more about their biomedical applications. Modules/Resources Extracellular vesicles...

EMBO Practical Course

EMBL Heidelberg

Registration
Closed

21 March - 25 March 2022

Introduction to multiomics data integration and visualisation

21 March 20222022CourseVirtual

Juanita Riveros

Identify the challenges, strategies and resources for multiomics data integration using biological examples.  The virtual course will focus on the use of public data resources and open access tools for enabling integrated working, with an emphasis on data visualisation. Working with public domain data can provide added value to data derived through a researcher’s own work and additionally  inform experimental design. This course is highly relevant in the current research scenario, where an increased volume of data across the whole spectrum of biology has created both more opportunities and challenges to identifying novel perspectives and answering questions in the life sciences. This course will focus on issues around data integration, but will not include systems biology modelling or machine learning approaches. A major element of this course is a group project, where participants will be organised in small groups to work together on a challenge set by the project mentors. These will allow participants to explore the bioinformatics tools and resources introduced in the course and to apply these to a set problem, providing hands-on experience of relevance to their own research. The group work will culminate in a presentation session involving all participants on the final day of the course, giving an opportunity for wider discussion on the benefits and challenges of integrating data. You may refer to the previous group projects that were organised for this course in February 2021. Virtual course The course will involve participants learning via pre-recorded lectures, live presentations, and trainer Q&A sessions. The content will be delivered over Zoom, with additional text communication over Slack. Computational practicals will be run on EMBL-EBI's virtual training infrastructure; this means there is no need to have a powerful computer to run exercises or a requirement to install complex software before the course. Trainers will be available to provide support, answer questions, and further explain the analysis during these practicals. Participants will need to be available between the hours of 09:30 - 18:00 GMT each day of the course Identify the challenges, strategies and resources for multiomics data integration using biological examples. The virtual course will focus on the use of public data resources and open access tools for enabling integrated working, with an emphasis on data visualisation. Working with public domain data can provide added value to data derived through a researcher’s own work and additionally inform experimental design. This course is highly relevant in the current research scenario, where an increased volume of data across the whole spectrum of biology has created both more opportunities and challenges to identifying novel perspectives and answering questions in the life sciences. This course will focus on issues around data integration, but will not include systems biology modelling or machine learning approaches. A major element of this course is a group project, where participants will be...

Course

Virtual

Registration
Closed

21 March - 23 March 2022

Inter-organ communication in physiology and disease

21 March 20222022ConferenceVirtual

Gerard Karsenty, Irene Miguel-Aliaga, Miguel Soares

OverviewSpeakersPreliminary Programme OverviewSpeakersPreliminary ProgrammePractical InformationSponsorsAbout Overview Please note that this event will now take place virtually.   Symposium Overview “Like a machine, any organism, even the simplest, is a functional unit, coherent and integrated. We are far from having elucidated, in complex organisms, the entire structure of these functional units”. A major outcome of research using model organisms has been to address this central question of biology that was stated so clearly and candidly by J. Monod in 1969. Genetic studies in model organism have first revealed that we are far from knowing all the functions fulfilled by various organs in vertebrates or invertebrates. In doing so, this body of work has nonetheless led to unprecedented progress in our understanding of how homeostasis of an entire organism is maintained. As a result, modern physiology has...

EMBO | EMBL Symposium

Virtual

Registration
21 February 2022
Abstract submission
24 January 2022

24 March 2022

Introductory bioinformatics Q&A session: genes and gene expression

24 March 20222022WebinarVirtual

Benjamin Moore, Silvie Korena Fexova, Dayane Rodrigues Araujo

This Q&A webinar will provide an opportunity for anyone who has completed Introductory bioinformatics: a curated set of EMBL-EBI online courses to join some of EMBL-EBI's experts and ask their own questions. This session will focus on genes and gene expression, including the EMBL-EBI resources Ensembl and Expression Atlas. If you have a question now, please submit it using this form, otherwise you can ask your question live at the webinar, or just join to hear answers to questions that others submit.   This Q&A webinar will provide an opportunity for anyone who has completed Introductory bioinformatics: a curated set of EMBL-EBI online courses to join some of EMBL-EBI's experts and ask their own questions. This session will focus on genes and gene expression, including the EMBL-EBI resources Ensembl and Expression Atlas. If you have a question now, please submit it using this form, otherwise you can ask your question live at the webinar, or just join to hear answers to questions that others submit.

Webinar

Virtual


25 March - 1 April 2022

BioExcel School on Biomolecular Simulations

25 March 20222022CourseVirtual

Michelle Mendonca

The course will include lectures and hands-on sessions on the following topics: Molecular Dynamics simulations Biomolecular Docking Free energy calculations Advanced sampling methods (Metadynamics) BioExcel Building Blocks (BioBB) Quantum mechanics/molecular mechanics (QM/MM) During the hands-on computer practicals you will make use of the BioExcel flagship software and tools: e.g. GROMACS, HADDOCK, PMX, BioBB, and CP2K. The trainers, developers and/or experts in the use of the software, will provide guidance and support. The course will include lectures and hands-on sessions on the following topics: Molecular Dynamics simulations Biomolecular Docking Free energy calculations Advanced sampling methods (Metadynamics) BioExcel Building Blocks (BioBB) Quantum mechanics/molecular mechanics (QM/MM) During the hands-on computer practicals you will make use of the BioExcel flagship software and tools: e.g. GROMACS, HADDOCK, PMX, BioBB, and CP2K. The trainers, developers and/or experts in the use of the software, will provide guidance and support.

Course

Virtual

Registration
Closed

31 March 2022

Introductory bioinformatics Q&A session: proteins and structures

31 March 20222022WebinarVirtual

Paul Denny, David Armstrong

This Q&A webinar will provide an opportunity for anyone who has completed Introductory bioinformatics: a curated set of EMBL-EBI online courses to join some of EMBL-EBI's experts and ask their own questions. This session will focus on proteins and structures, including the EMBL-EBI resources UniProt and PDBe. If you have a question now, please submit it using this form, otherwise you can ask your question live at the webinar, or just join to hear answers to questions that others submit. This Q&A webinar will provide an opportunity for anyone who has completed Introductory bioinformatics: a curated set of EMBL-EBI online courses to join some of EMBL-EBI's experts and ask their own questions. This session will focus on proteins and structures, including the EMBL-EBI resources UniProt and PDBe. If you have a question now, please submit it using this form, otherwise you can ask your question live at the webinar, or just join to hear answers to questions that others submit.

Webinar

Virtual


4 April - 8 April 2022

Gene expression at single-cell resolution

4 April 20222022CourseEMBL Heidelberg

Vladimir Benes, Dirk Jürgensen, Elisabeth Zielonka

OverviewSpeakers and TrainersPreliminary Programme OverviewSpeakers and TrainersPreliminary ProgrammePractical InformationSponsors Overview Proof of COVID-19 vaccination or recovery is required to attend this on-site course. Please see EMBL’s COVID-19 safety policy for on-site events.  Course overview The goal of this course is to provide participants with both the theory and practical skills required to design, prepare, run and analyse high-throughput single cell transcriptomic experiments using the Chromium Single Cell Controller from 10x Genomics. We will begin with a general introduction on the topic, including the cell partitioning technology, fundamentals of NGS, and the library preparation workflow. The hands-on session starts with cell handling followed by the preparation of transcriptome libraries from single-cells with a focus on best practices. Finally, we will quantify and quality control the prepared libraries,...

EMBL Course

EMBL Heidelberg

Registration
Closed

4 April - 8 April 2022

Data visualisation for biology

4 April 20222022CourseEMBL-EBI

EMBL-EBI Training team

Please note that the dates set for this 2022 course are subject to change, but all changes will be reflected on this course page. To keep informed of changes to the course and to find out when the course opens for applications, please register your interest. Please note that the dates set for this 2022 course are subject to change, but all changes will be reflected on this course page. To keep informed of changes to the course and to find out when the course opens for applications, please register your interest.

Course

EMBL-EBI

Registration
Closed

6 April - 9 April 2022

Microbial infections and human cancer

6 April 20222022ConferenceVirtual

Achim Breiling, Christian Jobin, Xin Lu, Thomas Meyer, Jacques Neefjes

OverviewSpeakersPreliminary Programme OverviewSpeakersPreliminary ProgrammePractical InformationSponsorsAbout Overview This conference will take place at EMBL Heidelberg, with the option to attend virtually. Proof of COVID-19 vaccination or recovery is required for on-site attendance. Please see EMBL’s COVID-19 terms and conditions.  Symposium Overview Microbial-host interaction has a profound impact on numerous biological systems, including metabolism, immunology, DNA integrity and nutrition. Pathobionts and pathogenic bacteria have developed specific abilities to gain growth advantage and niche resilience which affect these key host biological processes, often leading to disease states such as cancer. While the connection between helicobacter infection and gastric cancer was originally considered an exception, many new examples of bacterial infection contributing to cancer have been identified. This symposium...

EMBO | EMBL Symposium

Virtual

Registration
30 March 2022
Abstract submission
26 January 2022

6 April - 9 April 2022

Microbial infections and human cancer

6 April 20222022ConferenceEMBL Heidelberg

Achim Breiling, Christian Jobin, Xin Lu, Thomas Meyer, Jacques Neefjes

OverviewSpeakersPreliminary Programme OverviewSpeakersPreliminary ProgrammePractical InformationSponsorsAbout Overview This conference will take place at EMBL Heidelberg, with the option to attend virtually. Proof of COVID-19 vaccination or recovery is required for on-site attendance. Please see EMBL’s COVID-19 terms and conditions.  Symposium Overview Microbial-host interaction has a profound impact on numerous biological systems, including metabolism, immunology, DNA integrity and nutrition. Pathobionts and pathogenic bacteria have developed specific abilities to gain growth advantage and niche resilience which affect these key host biological processes, often leading to disease states such as cancer. While the connection between helicobacter infection and gastric cancer was originally considered an exception, many new examples of bacterial infection contributing to cancer have been identified. This symposium...

EMBO | EMBL Symposium

EMBL Heidelberg

Registration
30 March 2022
Abstract submission
26 January 2022

23 April - 29 April 2022

Methods for analysis of circRNAs: from discovery to function

23 April 20222022CourseEMBL Heidelberg

Marie-Laure Baudet, Vladimir Benes, Irene Bozzoni, Christoph Dieterich

Circular RNAs (CircRNAs) are a rediscovered class of RNA species that originate from back-splicing events, which have been reported across all domains of life. Many circular RNAs are stable, abundant and conserved between species. They exhibit context-dependent expression patterns, which are often linked to disease states. Validated circular RNA functions are numerous and range from regulation of transcription and splicing to RNA/protein sponging and scaffolding. OverviewSpeakers and TrainersPreliminary ProgrammePractical InformationSponsors Overview Proof of COVID-19 vaccination or recovery is required to attend this on-site course. Please see EMBL’s COVID-19 safety policy for on-site events. Course Overview Circular RNAs (CircRNAs) are a rediscovered class of RNA species that originate from back-splicing events, which have been reported across all domains of life. Many circular RNAs are stable, abundant and conserved between species. They exhibit context-dependent expression patterns, which are often linked to disease states. Validated circular RNA functions are numerous and range from regulation of transcription and splicing to RNA/protein sponging and scaffolding. However, CircRNAs are by and large the most underexplored class of all non-coding RNAs. This course will meet the specific need to explore complexity, distribution,...

EMBO Practical Course

EMBL Heidelberg

Registration
26 January 2022

25 April - 29 April 2022

EIPP Bioinformatics Predocs Course 2022

25 April 20222022CourseEMBL-EBI

Meredith Willmott

This course will provide you with an opportunity to improve your bioinformatics and computational skills and increase your awareness of publicly available tools and resources.  It is divided into 6 modules encompassing the topics: Image Analysis, Single Cell RNA Sequencing, Data Visualisation, Multiomics, Protein Structures and a module for advanced programmers. Participants will learn via a mix of live presentations, trainer-led live tutorials and surgery (knowledge exchange) sessions.    This course will provide you with an opportunity to improve your bioinformatics and computational skills and increase your awareness of publicly available tools and resources. It is divided into 6 modules encompassing the topics: Image Analysis, Single Cell RNA Sequencing, Data Visualisation, Multiomics, Protein Structures and a module for advanced programmers. Participants will learn via a mix of live presentations, trainer-led live tutorials and surgery (knowledge exchange) sessions.

Course

EMBL-EBI

Registration
Will open shortly

28 April 2022

Grand challenges in AI and data science

28 April 20222022ConferenceEMBL Heidelberg

OverviewSpeakersPreliminary programme OverviewSpeakersPreliminary programmePractical information Overview This conference will take place at EMBL Heidelberg, with live streaming option for virtual participants free of charge. Proof of COVID-19 vaccination or recovery is required for on-site attendance. Please see EMBL’s COVID-19 terms and conditions.  Registration is not yet open for this event. If you are interested in receiving more information please register your interest. Conference Overview From understanding the universe to tracking how viruses infect humans, large scale scientific data needs to be generated, analysed and distributed for science. The EIROforum alliance of European scientific infrastructures, CERN, ESO, ESA, EMBL, ESRF, IIL, EuXFEL and EuroFusion invite you to our first conference focusing on Grand challenges in AI and data science. These organisations have delivered the infrastructure and...

EIROforum Conference

EMBL Heidelberg

Registration
Will open shortly

2 May - 6 May 2022

Hands-on flow cytometry: learning by doing!

2 May 20222022CourseEMBL Heidelberg

Andrew Filby, Diana Ordonez, Malte Paulsen, Steffen Schmitt

OverviewSpeakers and TrainersPreliminary Programme OverviewSpeakers and TrainersPreliminary ProgrammePractical InformationSponsors Overview Proof of COVID-19 vaccination or recovery is required to attend this on-site course. Please see EMBL’s COVID-19 safety policy for on-site events. Course Overview Flow Cytometry is one of the most powerful single cell analysis methods used throughout the life sciences and medicine. By utilising Flow Cytometry we can identify and quantify specific cell populations from heterogeneous samples, analyse the cell cycle or proliferation state or simply detect the expression of fluorescent reporters. In line with the suggestions from our course in 2019, we will significantly enhance the number of analysis sessions together with our partners from FlowJo. We will cover the theory of Flow Cytometry and corroborate this information intensively with the practical issues of the most frequent assays as...

EMBL Course

EMBL Heidelberg

Registration
07 February 2022

9 May - 13 May 2022

Attacking open chromatin with ATAC sequencing

9 May 20222022CourseEMBL Heidelberg

V. Benes, U. Litzenburger, J. Zaugg

The goal of this introductory course is to teach the entire workflow of an ATAC-Seq experiment including library preparation, sequencing, data processing, and downstream analysis by addressing a real biological question that will be answered at the end of the course. OverviewSpeakers and TrainersPreliminary ProgrammePractical InformationSponsors Overview Proof of COVID-19 vaccination or recovery is required to attend this on-site course. Please see EMBL’s COVID-19 safety policy for on-site events. Course Overview ATAC-Seq stands for Assay of Transposase Accessible Chromatin and is a widespread method to profile open chromatin on a genome-scale. The goal of this introductory course is to teach the entire workflow of a single-cell and bulk ATAC-Seq experiment including library preparation, sequencing, data processing, and downstream analysis by addressing a real biological question that will be answered at the end of the course. We will start with the experimental single-cell and bulk ATAC-Seq protocol, highlighting the critical steps, potential pitfalls, and the most up-to-date tweaks to improve the quality of the results. After sequencing...

EMBL Course

EMBL Heidelberg

Registration
28 February 2022

9 May - 11 May 2022

Building networks: engineering in vascular biology

9 May 20222022OtherEMBL Barcelona

OverviewSpeakersSponsors OverviewSpeakersSponsors Overview Registration is not yet open for this event. If you are interested in receiving more information please register your interest. Conference Overview Blood vessels arise during early development and are essential for the formation and maintenance of larger tissues and organs. The vascular system regulates exchange of oxygen, nutrients, toxins and immune cells — the dysfunction of which can cause pathologies, as well as be consequent to the later stages of disease. Classical mouse models, genetics and histology, have provided significant knowledge to the field of vascular biology, in addition to recent advancements in diverse imaging modalities, single-cell approaches and computational modelling. Yet, there remain many open questions surrounding human vascular development and disease. Blood vessels present numerous research challenges due to their complex...

EMBO Workshop

EMBL Barcelona

Registration
Will open shortly

9 May - 12 May 2022

Cellular mechanisms driven by phase separation

9 May 20222022ConferenceEMBL Heidelberg

Simon Alberti, Dorothee Dormann, Edward Lemke, Tanja Mittag

Liquid phase separation is emerging as a common biophysical basis underlying many important cellular functions. This conference will bring together scientists from soft matter polymer physics, molecular “un”-structural biologists, and biologists working in cell, developmental and neurobiology to increase the awareness for how important phase separation is for our understanding of many biological processes. OverviewSpeakersPreliminary ProgrammePractical InformationSponsorsAbout Overview This conference will take place at EMBL Heidelberg, with the option to attend virtually. Proof of COVID-19 vaccination or recovery is required for on-site attendance. Please see EMBL’s COVID-19 safety policy for on-site events.  Symposium Overview Phase separation is emerging as a common biophysical basis underlying many important cellular functions. This conference will bring together scientists from soft matter, polymer physics, molecular biology, structural biology, and cell and developmental biology to study condensates in biology and disease. Goals are to increase the awareness how important phase separation is for our understanding of many biological processesto explore the large repertoire of new tools generated by other disciplines that are ripe to be applied to complex problems...

EMBO | EMBL Symposium

EMBL Heidelberg

Registration
02 May 2022
Abstract submission
14 February 2022

9 May - 12 May 2022

Cellular mechanisms driven by phase separation

9 May 20222022ConferenceVirtual

Simon Alberti, Dorothee Dormann, Edward Lemke, Tanja Mittag

Liquid phase separation is emerging as a common biophysical basis underlying many important cellular functions. This conference will bring together scientists from soft matter polymer physics, molecular “un”-structural biologists, and biologists working in cell, developmental and neurobiology to increase the awareness for how important phase separation is for our understanding of many biological processes. OverviewSpeakersPreliminary ProgrammePractical InformationSponsorsAbout Overview This conference will take place at EMBL Heidelberg, with the option to attend virtually. Proof of COVID-19 vaccination or recovery is required for on-site attendance. Please see EMBL’s COVID-19 safety policy for on-site events.  Symposium Overview Phase separation is emerging as a common biophysical basis underlying many important cellular functions. This conference will bring together scientists from soft matter, polymer physics, molecular biology, structural biology, and cell and developmental biology to study condensates in biology and disease. Goals are to increase the awareness how important phase separation is for our understanding of many biological processesto explore the large repertoire of new tools generated by other disciplines that are ripe to be applied to complex problems...

EMBO | EMBL Symposium

Virtual

Registration
02 May 2022
Abstract submission
14 February 2022

15 May - 20 May 2022

Advanced fluorescence imaging techniques

15 May 20222022CourseEMBL Heidelberg

OverviewSponsors Overview < OverviewSponsors Overview Proof of COVID-19 vaccination or recovery is required to attend this on-site course. Please see EMBL’s COVID-19 safety policy for on-site events. Registration is not yet open for this event. If you are interested in receiving more information please register your interest. Course Overview This practical course will cover advanced light microscopy techniques and participants will learn how to derive qualitative and quantitative insights on molecular mechanisms in cells and developing organisms. Invited guest researchers together with experts from the EMBL and microscopy professionals will foster an intense information flow with a balance of lectures and practical workshops. The focus of the course will be on the use of fluorescence microscopy to obtain quantitative information about protein dynamics in living samples. Audience This course is directed...

EMBL Course

EMBL Heidelberg

Registration
Will open shortly

15 May - 18 May 2022

Mechanobiology in development and disease

15 May 20222022ConferenceVirtual

Alba Diz-Muñoz, Carl-Philipp Heisenberg, Prisca Liberali, Anđela Šarić, Xavier Trepat

OverviewSpeakersPreliminary Programme OverviewSpeakersPreliminary ProgrammePractical InformationSponsorsAbout Overview This conference will take place at EMBL Heidelberg, with the option to attend virtually. Proof of COVID-19 vaccination or recovery is required for on-site attendance. Please see EMBL’s COVID-19 safety policy for on-site events.  Symposium Overview Environmental mechanics impact the behaviour of cells, which in turn modify their surroundings. These bi-directional cell-tissue interactions have important consequences for gene expression, cell fate and function and give rise to transient and permanent tissue modifications. These processes are key for immunity and homeostasis, but also play a role in pathological processes as they are critical for fibrosis, inflammation and cancer metastasis. This symposium will focus on the interplay of cells with their environment and will bring together...

EMBO | EMBL Symposium

Virtual

Registration
08 May 2022
Abstract submission
21 February 2022

15 May - 18 May 2022

Mechanobiology in development and disease

15 May 20222022ConferenceEMBL Heidelberg

Alba Diz-Muñoz, Carl-Philipp Heisenberg, Prisca Liberali, Anđela Šarić, Xavier Trepat

OverviewSpeakersPreliminary Programme OverviewSpeakersPreliminary ProgrammePractical InformationSponsorsAbout Overview This conference will take place at EMBL Heidelberg, with the option to attend virtually. Proof of COVID-19 vaccination or recovery is required for on-site attendance. Please see EMBL’s COVID-19 safety policy for on-site events.  Symposium Overview Environmental mechanics impact the behaviour of cells, which in turn modify their surroundings. These bi-directional cell-tissue interactions have important consequences for gene expression, cell fate and function and give rise to transient and permanent tissue modifications. These processes are key for immunity and homeostasis, but also play a role in pathological processes as they are critical for fibrosis, inflammation and cancer metastasis. This symposium will focus on the interplay of cells with their environment and will bring together...

EMBO | EMBL Symposium

EMBL Heidelberg

Registration
08 May 2022
Abstract submission
21 February 2022

16 May - 20 May 2022

Exploring human genetic variation

16 May 20222022CourseVirtual

Jane Reynolds

Do you want to understand more about genetic variation? Are you aware of the resources available for finding, viewing and exploring variant data? Are you trying to link variant data to phenotypes? This three-day workshop will demonstrate resources and bioinformatics tools available at EMBL-EBI and the Wellcome Sanger Institute that will aid understanding of human genetic variation. Participants will learn via a mix of lectures, trainer Q&A sessions, and hands-on training. Practical experience will be developed through group activities and trainer-led exercises. Live sessions will be delivered using Zoom with additional support and communication via Slack.  This course will take place over three non-consecutive days: 16, 18, and 20 May 2022. Selected participants will be sent materials prior to the course. These might include pre-recorded talks and required reading or online training that will be essential to fully understand the course. Participants will need to be available between the hours of 09:00 - 17:30 BST each day of the course. Trainers will be available to assist, answer questions, and further explain the analysis during these times.   Do you want to understand more about genetic variation? Are you aware of the resources available for finding, viewing and exploring variant data? Are you trying to link variant data to phenotypes? This three-day workshop will demonstrate resources and bioinformatics tools available at EMBL-EBI and the Wellcome Sanger Institute that will aid understanding of human genetic variation. Participants will learn via a mix of lectures, trainer Q&A sessions, and hands-on training. Practical experience will be developed through group activities and trainer-led exercises. Live sessions will be delivered using Zoom with additional support and communication via Slack. This course will take place over three non-consecutive days: 16, 18, and 20 May 2022. Selected participants will be sent materials prior to the course. These might include pre-recorded talks and required reading or online training...

Course

Virtual

Registration
11 March 2022

16 May - 20 May 2022

Microscopy data analysis: machine learning and the BioImage Archive

16 May 20222022CourseVirtual

Juanita Riveros

This course will introduce programmatic approaches used in the analysis of bioimage data via the BioImage Archive. The content will explore a variety of data types including electron microscopy, cell and tissue microscopy, and miscellaneous or multi-modal imaging data. Participants will cover contemporary biological image analysis with an emphasis on machine learning and advanced image analysis. Further instruction will be offered using applications such as ZeroCostDL4Mic, ilastik, ImJoy, the BioImage Model Zoo, and CellProfiler. Virtual course Participants will learn via a mix of pre-recorded lectures, live presentations, and trainer Q&A sessions. Practical experience will be developed through group activities and trainer-led computational exercises. Live sessions will be delivered using Zoom with additional support and asynchronous communication via Slack.  Pre-recorded material may be provided before the course starts that participants will need to watch, read or work through to gain the most out of the actual training event. In the week before the course, there will be a brief induction session. Computational practicals will run on EMBL-EBI's virtual training infrastructure, meaning participants will not require access to a powerful computer or install complex software on their own machines. Participants will need to be available between the hours of 09:00 - 17:30 BST each day of the course. Trainers will be available to assist, answer questions, and provide further explanations during these times.   This course will introduce programmatic approaches used in the analysis of bioimage data via the BioImage Archive. The content will explore a variety of data types including electron microscopy, cell and tissue microscopy, and miscellaneous or multi-modal imaging data. Participants will cover contemporary biological image analysis with an emphasis on machine learning and advanced image analysis. Further instruction will be offered using applications such as ZeroCostDL4Mic, ilastik, ImJoy, the BioImage Model Zoo, and CellProfiler. Virtual course Participants will learn via a mix of pre-recorded lectures, live presentations, and trainer Q&A sessions. Practical experience will be developed through group activities and trainer-led computational exercises. Live sessions will be delivered using Zoom with additional support and asynchronous communication via Slack. Pre-recorded material may...

Course

Virtual

Registration
31 January 2022

23 May - 25 May 2022

BioMalPar XVIII: biology and pathology of the malaria parasite

23 May 20222022ConferenceEMBL Heidelberg

R. Dzikowski, S. Reece, M. Mota, C. Moxon

Malaria remains one of the most significant global public health challenges, with more than 200 million clinical cases worldwide each year. The lack of an effective licensed vaccine and the continual emergence of drug-resistant malaria parasites emphasizes the need for new control and prevention strategies. This need for innovation has become even more apparent with the disruption of global malaria control programs due to the COVID-19 pandemic and potential reversal of gains made over the last few decades. Generation of fundamental knowledge lies at the heart of developing new tools and innovations for malaria intervention. The malaria research community has a long history of being a highly collaborative field, reliant on diverse technologies, sharing of resources and dissemination of biological advances made. Accessibility and timely sharing of these advances through the establishment of new collaborations is therefore vital for the translation of new ideas into public health impact. OverviewSpeakersPractical InformationSponsors Overview This conference will take place at EMBL Heidelberg, with the option to attend virtually. Proof of COVID-19 vaccination or recovery is required for on-site attendance. Please see EMBL’s COVID-19 terms and conditions. Registration is now open for this event. More information and a preliminary programme will be uploaded as soon as they are available. Conference Overview Malaria remains one of the most significant global public health challenges, with more than 200 million clinical cases worldwide each year. The lack of a vaccine that provides effective long-term protection and the continual emergence of drug-resistant malaria parasites emphasises the need for new control and prevention strategies. This need for innovation has become even more apparent with the disruption of global malaria control programs due to the COVID-19...

EMBL Conference

EMBL Heidelberg

Registration
16 May 2022
Abstract submission
28 February 2022

24 May - 27 May 2022

Introduction to metabolomics analysis

24 May 20222022CourseEMBL-EBI

Meredith Willmott

This course will provide an introduction to metabolomics using publicly available data, software and tools. Participants will become familiar with the current state of experimental design, data acquisition (LC-MS, GC-MS, MS imaging), processing and modelling as well as community standards and sharing in metabolomics, particularly through using the EMBL-EBI’s MetaboLights repository and Galaxy infrastructure. There will be a practical component, where participants will learn through hands-on tutorials to use tools available for data analysis and data submission. The course will be completed with an interactive session which will build on the week’s learning to discuss how to employ a metabolomics workflow with a case study. In-person course We plan to deliver this course in an in-person manner onsite at our training suite at EMBL-EBI, Hinxton.  Please be aware that we are continually evaluating the ongoing pandemic situation and, as such, may need to change the format of courses at short notice. Your safety is paramount to us; you can read our COVID guidance policy for more information. All information is correct at time of publishing. This course will provide an introduction to metabolomics using publicly available data, software and tools. Participants will become familiar with the current state of experimental design, data acquisition (LC-MS, GC-MS, MS imaging), processing and modelling as well as community standards and sharing in metabolomics, particularly through using the EMBL-EBI’s MetaboLights repository and Galaxy infrastructure. There will be a practical component, where participants will learn through hands-on tutorials to use tools available for data analysis and data submission. The course will be completed with an interactive session which will build on the week’s learning to discuss how to employ a metabolomics workflow with a case study. In-person course We plan to deliver this course in an in-person manner onsite at our training suite at EMBL-EBI, Hinxton. Please be aware that we are continually...

Course

EMBL-EBI

Registration
18 February 2022


29 May - 3 June 2022

Whole transcriptome data analysis

29 May 20222022CourseEMBL Heidelberg

Marco Beccuti, Vladimir Benes, Raffaele Calogero, Francesca Cordero

OverviewOrganisersPreliminary Programme OverviewOrganisersPreliminary ProgrammePractical InformationSponsors Overview Proof of COVID-19 vaccination or recovery is required to attend this on-site course. Please see EMBL’s COVID-19 safety policy for on-site events. Course Overview This course will teach the biological researchers how to analyse biological data sets using open-source software. Most of the analysis will be performed with docker4seq package, which was developed to facilitate the use of computing demanding applications in the field of NGS data analysis. Docker4seq package uses docker containers that embed demanding computing tasks (e.g. short reads mapping) into isolated containers. This approach provides multiple advantages: the user does not need to install all the software on its local server, the results generated by different containers can be organised in pipelines and reproducible research is guarantee by the...

EMBL Course

EMBL Heidelberg

Registration
07 March 2022

8 June - 10 June 2022

Bioinformatics for principal investigators

8 June 20222022CourseEMBL-EBI

Juanita Riveros

This course has been designed to provide Principal Investigators (PI's) working in the life sciences with an introduction to the challenges of working with biological data as a research leader. Starting with a look at where bioinformatics and data science fits into their research teams, the course will enable PI’s to take a strategic look at the requirements for undertaking such work and how bioinformatics capacity can be developed from personnel through to computational needs.  It will additionally provide guidance on strategies for managing data, and the importance of data sharing; how to work with computational collaborators and what resources are available across the life sciences to support such work. During this course we will not be teaching hands-on bioinformatics analysis, but we will be signposting appropriate training resources to upskill you and your team. This course is organised in parallel with Managing a Bioinformatics Core Facility to maximise opportunities for networking. Shared sessions are highlighted in bold in the course programme. In-person course We plan to deliver this course in an in-person manner onsite at our training suite at EMBL-EBI, Hinxton.  Please be aware that we are continually evaluating the ongoing pandemic situation and, as such, may need to change the format of courses at short notice. Your safety is paramount to us; you can read our COVID guidance policy for more information. All information is correct at time of publishing. This course has been designed to provide Principal Investigators (PI's) working in the life sciences with an introduction to the challenges of working with biological data as a research leader. Starting with a look at where bioinformatics and data science fits into their research teams, the course will enable PI’s to take a strategic look at the requirements for undertaking such work and how bioinformatics capacity can be developed from personnel through to computational needs. It will additionally provide guidance on strategies for managing data, and the importance of data sharing; how to work with computational collaborators and what resources are available across the life sciences to support such work. During this course we will not be teaching hands-on bioinformatics analysis, but we will be signposting appropriate training resources to upskill you and your team. This course is...

Course

EMBL-EBI

Registration
25 February 2022

8 June - 10 June 2022

Managing a bioinformatics core facility

8 June 20222022CourseEMBL-EBI

Sophie Spencer

This knowledge exchange workshop is an opportunity for managers of bioinformatics core facilities to learn from EMBL-EBI’s service teams, from each other, and from potential users of their services. These facilities play an essential role in enabling research in the molecular life sciences. The landscape is constantly evolving as new research tools emerge, as experiments become increasingly data intensive, and as their clients – experimental researchers – become more exposed to the power of data-driven biology. This course will allow participants to share experiences, discuss challenges and solutions that they face, and plan ways to cope with the ever changing demands raised by the molecular life science field. It will include sessions to learn from data providers at EMBL-EBI, hear how others have tackled common problems, and work together to design core services. This course is organised in parallel with Bioinformatics for principal investigators to maximise opportunities for networking. Shared sessions are highlighted in bold in the course programme. In-person course We plan to deliver this course in an in-person manner onsite at our training suite at EMBL-EBI, Hinxton.  Please be aware that we are continually evaluating the ongoing pandemic situation and, as such, may need to change the format of courses at short notice. Your safety is paramount to us; you can read our COVID guidance policy for more information. All information is correct at time of publishing. This knowledge exchange workshop is an opportunity for managers of bioinformatics core facilities to learn from EMBL-EBI’s service teams, from each other, and from potential users of their services. These facilities play an essential role in enabling research in the molecular life sciences. The landscape is constantly evolving as new research tools emerge, as experiments become increasingly data intensive, and as their clients – experimental researchers – become more exposed to the power of data-driven biology. This course will allow participants to share experiences, discuss challenges and solutions that they face, and plan ways to cope with the ever changing demands raised by the molecular life science field. It will include sessions to learn from data providers at EMBL-EBI, hear how others have tackled common problems, and work together to design core services. This course is...

Course

EMBL-EBI

Registration
25 February 2022

8 June - 11 June 2022

Microtubules: from atoms to complex systems

8 June 20222022ConferenceEMBL Heidelberg

Anna Akhmanova, Carsten Janke, Kassandra Ori-McKenney, Manuel Théry

In recent years, interdisciplinary approaches embracing cell biology, genetics, molecular biology, biochemistry, biophysics, structural biology and mathematical modelling have made a tremendous impact on the microtubule field. OverviewSpeakers and OrganisersPreliminary ProgrammePractical InformationSponsorsAbout Overview This conference will take place at EMBL Heidelberg, with the option to attend virtually. Proof of COVID-19 vaccination or recovery is required for on-site attendance. Please see EMBL’s COVID-19 terms and conditions. Symposium Overview The microtubule cytoskeleton is essential for a wide variety of cellular functions, such as chromosome segregation, directed vesicle and organelle transport, cell motility and cell polarity. Impaired microtubule function can lead to human diseases including cancer and neurodegenerative disorders, where microtubules serve as important therapeutic targets. In recent years, interdisciplinary approaches embracing cell biology, genetics, molecular biology, biochemistry, biophysics, structural biology and mathematical modelling have made a tremendous impact on...

EMBO | EMBL Symposium

EMBL Heidelberg

Registration
01 June 2022
Abstract submission
16 March 2022

12 June - 17 June 2022

BioExcel Summer School on Biomolecular Simulations 2022

12 June 20222022CourseEMBL Rome

Marta Lloret Llinares

The summer school will include lectures and hands-on sessions on the following topics: Molecular dynamics simulations Biomolecular docking Free energy calculations Advanced sampling methods (Metadynamics) BioExcel Building Blocks (BioBB) Quantum mechanics/molecular mechanics (QM/MM) Machine learning During the hands-on computer practicals you will make use of the BioExcel flagship software and tools: e.g. GROMACS, HADDOCK, PMX, BioBB, and CP2K. The trainers, developers and/or experts in the use of the software, will provide guidance and support. You can find more informatioan about the course on the BioExcel website: https://bioexcel.eu/events/bioexcel-summer-school-on-biomolecular-simulations-2022/ The summer school will include lectures and hands-on sessions on the following topics: Molecular dynamics simulations Biomolecular docking Free energy calculations Advanced sampling methods (Metadynamics) BioExcel Building Blocks (BioBB) Quantum mechanics/molecular mechanics (QM/MM) Machine learning During the hands-on computer practicals you will make use of the BioExcel flagship software and tools: e.g. GROMACS, HADDOCK, PMX, BioBB, and CP2K. The trainers, developers and/or experts in the use of the software, will provide guidance and support. You can find more informatioan about the course on the BioExcel website: https://bioexcel.eu/events/bioexcel-summer-school-on-biomolecular-simulations-2022/

Course

EMBL Rome

Registration
07 March 2022

12 June - 17 June 2022

Humanized mice, personalized therapies and big data

12 June 20222022CourseEMBL Heidelberg

Karl-Dimiter Bissig, Christian Münz, Isabel Rollan, J.J. Schuringa, Leonard Shultz, Brian Soper, Renata Stripecke

This course will train early and experienced researchers and consolidate interactions of the international scientific community in the field of humanized mouse models. OverviewSpeakers and TrainersPreliminary ProgrammePractical InformationSponsors Overview Proof of COVID-19 vaccination or recovery is required to attend this on-site course. Please see EMBL’s COVID-19 safety policy for on-site events. Course Overview Humanized mouse engraftment models (human immune system and/or human tissue) are an integral part of basic and translational research for the understanding of human diseases and for development of new therapies. The Ebola Virus outbreak has demonstrated the relevance of humanized mouse models for the understanding of emerging diseases and testing new medicines. The same can apply for the Coronavirus (COVID-19) pandemic. “Big pharma” and biotech companies include humanized mice in their pre-clinical development portfolio to test efficacy and safety of anti-cancer drugs. These platforms provide researchers and drug developers...

EMBO Practical Course

EMBL Heidelberg

Registration
11 March 2022

13 June - 17 June 2022

Summer school in bioinformatics

13 June 20222022CourseEMBL-EBI

EMBL-EBI Training team

This course, organised in association with Wellcome Connecting Science, provides an introduction to the use of bioinformatics in biological research, giving participants guidance for using bioinformatics in their work whilst also providing hands-on training in tools and resources appropriate to their research. Participants will initially be introduced to bioinformatics theory and practice, including best practices for undertaking bioinformatics analysis, data management, and reproducibility. To enable specific exploration of resources in their particular field of interest, participants will be divided into focused groups to work on a project set by resource and data experts from EMBL-EBI and external collaborating institutes. These projects will end with a presentation from each group on the final day of the course to bring together learnings from all participants. Participants will be required to review some pre-recorded material prior to the start of the course and will have an opportunity to meet other trainees in an induction session to be held virtually in the week before the course take place. Group projects A major element of this course is a group project, where participants will be placed in small groups to work together on a challenge set by trainers from EMBL-EBI and external institutes. This allows people to explore the bioinformatics tools and resources available in their area of interest and apply them to a set problem, providing participants with hands-on experience relevant to their own research. The group work will culminate in a presentation session involving all participants on the final day of the course, giving an opportunity for wider discussion on the benefits and challenges of working with biological data. Groups are mentored and supported by the trainers who set the initial challenge, but the groups will be responsible for driving their projects forward, with all members expected to take an active role. Groups are pre-organised before the course, and all group members will be sent some short “homework” in preparation for their project work prior to the start of the course. Basic outlines of the projects on offer this year are given below. In your application you must indicate your first and second choice of project, based on which you think would benefit your research most. Not all projects may be offered, and final decisions on which projects will be run during the course will be made based on the number of applicants per project. Most of the projects cover mammalian data sets, however, in many cases, the methods and approaches taught are transferable to data from various species. Networks and pathways This project will cover typical bioinformatics analysis steps needed to put differentially expressed genes into a wider biological context. You will start with gene expression data (RNA-seq) to build an initial interaction network. Next, you will learn to combine public network datasets, identify key regulators of biological pathways, and explore biological function through network analysis. You will get first-hand experience in integration and co-visualising with additional data and functional enrichment analysis. All this helps to put the initial results into a previously known context and provide hypotheses for potential follow up experiments. We will use Cytoscape, Expression Atlas, g:Profiler, StringDb, among other tools. We also may give a few R packages a try. Genome variation across human populations Natural variation between individuals or between different human populations is a result of genome mutations throughout evolutionary history. Some mutations may become fixed because of their beneficial effect while most drift among individuals. During this project, you will investigate genomic variation between two separate human populations of European and Asian descent. Using sequence data from a number of individuals from each population, you will use a range of bioinformatics tools to discover variants that exist between them. In the second section of the project, you will attempt to analyse the functional consequences of the variants you have identified, linking them to phenotypes. Modelling cell signalling pathways Curating models of biological processes is an effective training in computational systems biology, where the curators gain an integrative knowledge of biological systems, modelling, and bioinformatics. You will learn to encode and simulate ordinary differential equation models of signalling pathways from a recent publication using user-friendly software such as COPASI even without extensive mathematical background. You will learn to perform in-silico experiments, new predictions, and develop hypotheses. Furthermore, you will learn how to annotate models and re-use pre-existing models from open repositories such as BioModels. Interpreting functional information from large scale protein structure data This project will introduce you to the wealth of publicly available data in the Protein Data Bank (PDB) and give you the opportunity to investigate how large subsets of structure data can be used to analyse protein features and determine function. In the project you will learn how to: identify relevant protein structures, collate and interpret functional information, and implement this process programmatically. Analysis of intercellular interactions in healthy and diseased states Ulcerative colitis is an inflammatory bowel disease. The exact pathomechanism of the disease is unknown. However, the interactions between the intestinal immune cells and the intestinal epithelial cells play a crucial role during the development of the disease. Single-cell RNA-seq measurements can help us understand these complex interactions. The expression data combined with protein-protein interaction databases can shed light on the connections between cells in diseased and healthy states. During this project, you will use a single-cell RNA-seq dataset to build interactions between the various cells. The dataset contains pre-processed, cell type classified data of biopsies from healthy, inflamed and non-inflamed UC colonic biopsies. The interactions between cells will be downloaded from the OmniPath database. You will use Python Notebooks to build up the intercellular networks, map the single cell RNA-seq expression data and visualise them. The intercellular networks between various cell types can then be compared by Cytoscape. This course, organised in association with Wellcome Connecting Science, provides an introduction to the use of bioinformatics in biological research, giving participants guidance for using bioinformatics in their work whilst also providing hands-on training in tools and resources appropriate to their research. Participants will initially be introduced to bioinformatics theory and practice, including best practices for undertaking bioinformatics analysis, data management, and reproducibility. To enable specific exploration of resources in their particular field of interest, participants will be divided into focused groups to work on a project set by resource and data experts from EMBL-EBI and external collaborating institutes. These projects will end with a presentation from each group on the final day of the course to bring together learnings from all participants. Participants will be...

Course

EMBL-EBI

Registration
04 March 2022

19 June - 22 June 2022

Defining and defeating metastasis

19 June 20222022ConferenceEMBL Heidelberg

Johanna Joyce, Daniel Klimmeck, Joan Massagué, Charles Swanton

OverviewSpeakersPreliminary Programme OverviewSpeakersPreliminary ProgrammePractical InformationSponsorsAbout Overview This conference will take place at EMBL Heidelberg, with the option to attend virtually. Proof of COVID-19 vaccination or recovery is required for on-site attendance. Please see EMBL’s COVID-19 terms and conditions. Symposium Overview This symposium will bring together researchers from diverse fields to enhance our understanding of the dissemination and metastatic colonisation of tumour cells. It will provide a unique opportunity for interdisciplinary exchange on current approaches and future collaborations on metastasis and its therapeutic challenges. Session Topics Metastasis initiating cells, circulating tumour cellsMotility and invasionTranscriptional and epigenetic control of metastasisMetastasis heterogeneity, EMT and plasticityMetastasis signalling and latencyMetastasis imaging, tumour...

EMBO | EMBL Symposium

EMBL Heidelberg

Registration
12 June 2022
Abstract submission
27 March 2022

19 June - 22 June 2022

Defining and defeating metastasis

19 June 20222022ConferenceVirtual

Johanna Joyce, Daniel Klimmeck, Joan Massagué, Charles Swanton

OverviewSpeakersPreliminary Programme OverviewSpeakersPreliminary ProgrammePractical InformationSponsorsAbout Overview This conference will take place at EMBL Heidelberg, with the option to attend virtually. Proof of COVID-19 vaccination or recovery is required for on-site attendance. Please see EMBL’s COVID-19 terms and conditions. Symposium Overview This symposium will bring together researchers from diverse fields to enhance our understanding of the dissemination and metastatic colonisation of tumour cells. It will provide a unique opportunity for interdisciplinary exchange on current approaches and future collaborations on metastasis and its therapeutic challenges. Session Topics Metastasis initiating cells, circulating tumour cellsMotility and invasionTranscriptional and epigenetic control of metastasisMetastasis heterogeneity, EMT and plasticityMetastasis signalling and latencyMetastasis imaging, tumour...

EMBO | EMBL Symposium

Virtual

Registration
12 June 2022
Abstract submission
27 March 2022

20 June - 24 June 2022

Cancer genomics

20 June 20222022CourseEMBL-EBI

Jane Reynolds

This course will focus on the analysis of data from genomic studies of cancer.  Talks and interactive sessions will give an insight into the bioinformatic concepts required to analyse such data, whilst practical sessions will enable the participants to apply statistical methods to the analysis of cancer genomics data under the guidance of the trainers. In-person course We plan to deliver this course in an in-person manner onsite at our training suite at EMBL-EBI, Hinxton.  Please be aware that we are continually evaluating the ongoing pandemic situation and, as such, may need to change the format of courses at short notice. Your safety is paramount to us; you can read our COVID guidance policy for more information. All information is correct at time of publishing. This course will focus on the analysis of data from genomic studies of cancer. Talks and interactive sessions will give an insight into the bioinformatic concepts required to analyse such data, whilst practical sessions will enable the participants to apply statistical methods to the analysis of cancer genomics data under the guidance of the trainers. In-person course We plan to deliver this course in an in-person manner onsite at our training suite at EMBL-EBI, Hinxton. Please be aware that we are continually evaluating the ongoing pandemic situation and, as such, may need to change the format of courses at short notice. Your safety is paramount to us; you can read our COVID guidance policy for more information. All information is correct at time of publishing.

Course

EMBL-EBI

Registration
11 March 2022

29 June - 1 July 2022

Timing mechanisms linking development and evolution

29 June 20222022ConferenceEMBL Barcelona

James Briscoe, Megan Davey, Miki Ebisuya, Pierre Vanderhaeghen

OverviewSponsors Overview < OverviewSponsors Overview Registration is not yet open for this event. If you are interested in receiving more information please register your interest. Conference Overview Time is inherent to biological processes. It determines the order of events and the speed at which they take place. This is particularly obvious during embryonic development where the sequence and rate of events ensures that structures develop in the right place, at the right time. Modifying the developmental tempo can affect the final size and composition of tissues, as well as their plasticity and function. Strikingly, comparisons between species reveals that, although the order and underlying molecular mechanisms are often indistinguishable, the pace at which they advance can differ substantially. Hence comparison of biological processes between species is likely to provide insight into time-keeping mechanisms and...

EMBO Workshop

EMBL Barcelona

Registration
Will open shortly

4 July - 8 July 2022

Systems biology: from large datasets to biological insight

4 July 20222022CourseEMBL-EBI

Meredith Willmott

This course covers the use of computational tools to extract biological insight from omics datasets. The content will explore a range of approaches - ranging from network inference and data integration to machine learning and logic modelling - that can be used to extract biological insights from varied data types. Together these techniques will provide participants with a useful toolkit for designing new strategies to extract relevant information and understanding from large-scale biological data. The motivation for running this course is a result of advances in computer science and high-performance computing that have led to groundbreaking developments in systems biology model inference. With the comparable increase of publicly-available, large-scale biological data, the challenge now lies in interpreting them in a biologically valuable manner. Likewise, machine learning approaches are making a significant impact in our analysis of large omics datasets and the extraction of useful biological knowledge. In-person course We plan to deliver this course in an in-person manner onsite at our training suite at EMBL-EBI, Hinxton.  Please be aware that we are continually evaluating the ongoing pandemic situation and, as such, may need to change the format of courses at short notice. Your safety is paramount to us; you can read our COVID guidance policy for more information. All information is correct at time of publishing. This course covers the use of computational tools to extract biological insight from omics datasets. The content will explore a range of approaches - ranging from network inference and data integration to machine learning and logic modelling - that can be used to extract biological insights from varied data types. Together these techniques will provide participants with a useful toolkit for designing new strategies to extract relevant information and understanding from large-scale biological data. The motivation for running this course is a result of advances in computer science and high-performance computing that have led to groundbreaking developments in systems biology model inference. With the comparable increase of publicly-available, large-scale biological data, the challenge now lies in interpreting them in a biologically valuable manner. Likewise, machine learning approaches are...

Course

EMBL-EBI

Registration
18 March 2022

11 July - 13 July 2022

Microfluidics 2022

11 July 20222022ConferenceEMBL Heidelberg

Amy Herr, Christoph Merten, Angela Wu

The EMBL Microfluidics Conference brings together top researchers and emerging research leaders to spark scientific exchange and create community. Topics spanning from fundamental physics & chemistry to device design and nascent biological applications will be presented, which should be of interest to everyone from experts in microfluidic design to users of the next-generation of microfluidic tools, and from academic scholars and trainees to industry colleagues. OverviewSpeakersProgrammePractical InformationSponsors Overview This conference will take place at EMBL Heidelberg, with the option to attend virtually. Proof of COVID-19 vaccination or recovery is required for on-site attendance. Please see EMBL’s COVID-19 terms and conditions.  Conference Overview Microfluidic tools have made recent biological and biomedical research leaps possible. At the physics, engineering, chemistry and biology interface, innovation in microfluidic approaches has positively impacted areas as diverse as nucleotide sequencing, functional genomics, single-cell and single-molecule studies, and biomedical diagnostics. Many of these applications – including next-generation sequencing devices – have been revolutionised by miniaturisation, paving the way for global gene analysis and hence transforming biology. Working on the pico- to nanoliter scale...

EMBL Conference

EMBL Heidelberg

Registration
04 July 2022
Abstract submission
19 April 2022

11 July - 16 July 2022

Super-resolution microscopy: time-resolved STED nanoscopy

11 July 20222022CourseEMBL Heidelberg

Marco Lampe, Rainer Pepperkok, Ulf Schwarz

This six-day comprehensive microscopy course focuses on stimulated emission depletion microscopy (STED) and its application to biological questions. It covers the fundamentals of STED microscopy, different technical implementations and has a strong emphasis on sample preparation – including choice of fluorophores and refractive index matching, as well as image acquisition strategies for fixed samples and living cells. Students will have the opportunity for exercises on state-of-the-art STED microscopes in which they will acquire high quality nanoscopy data. Through lectures, tutorials, demonstrations and practical workshops, the course provides in-depth knowledge on all aspects of STED Nanoscopy. OverviewSponsors Overview Proof of COVID-19 vaccination or recovery is required to attend this on-site course. Please see EMBL’s COVID-19 safety policy for on-site events. Registration is not yet open for this event. If you are interested in receiving more information please register your interest. Course Overview This six-day comprehensive microscopy course focuses on stimulated emission depletion microscopy (STED) and its application to biological questions. It covers the fundamentals of STED microscopy, different technical implementations and has a strong emphasis on sample preparation – including choice of fluorophores and refractive index matching, as well as image acquisition strategies for fixed samples and living cells. Students will have the opportunity for exercises on state-of-the-art STED microscopes in which they will acquire high quality nanoscopy data. Through...

EMBL Course

EMBL Heidelberg

Registration
Will open shortly

11 July - 15 July 2022

Bioinformatics for T-Cell immunology

11 July 20222022CourseEMBL-EBI

Sophie Spencer

This course will introduce and explore a number of key bioinformatics tools and resources that can be applied to T-cell immunological research. Targeted at life scientists with a wet-lab focus, it will provide participants with an overview of best-practice methods in applying bioinformatics approaches and enable them to become confident users of their own and public domain data. The resources introduced during the course will cover a variety of data types, from genomic data to computational models, and biological pathways. Participants will gain experience of the analysis pipelines for RNA-Seq and flow cytometry experiments as well as data integration of -omics data and basics concepts of machine learning approaches.This course has been developed in collaboration with the ENLIGHT-TEN+ project, a consortium focused on developing early-stage research expertise in T-cell immunology and big data analysis. In-person course We plan to deliver this course in an in-person manner onsite at our training suite at EMBL-EBI, Hinxton.  Please be aware that we are continually evaluating the ongoing pandemic situation and, as such, may need to change the format of courses at short notice. Your safety is paramount to us; you can read our COVID guidance policy for more information. All information is correct at time of publishing. This course will introduce and explore a number of key bioinformatics tools and resources that can be applied to T-cell immunological research. Targeted at life scientists with a wet-lab focus, it will provide participants with an overview of best-practice methods in applying bioinformatics approaches and enable them to become confident users of their own and public domain data. The resources introduced during the course will cover a variety of data types, from genomic data to computational models, and biological pathways. Participants will gain experience of the analysis pipelines for RNA-Seq and flow cytometry experiments as well as data integration of -omics data and basics concepts of machine learning approaches.This course has been developed in collaboration with the ENLIGHT-TEN+ project, a consortium focused on developing early-stage research expertise in T-cell immunology and big...

Course

EMBL-EBI

Registration
18 March 2022

17 July - 23 July 2022

C. elegans: from genome editing to imaging

17 July 20222022CourseEMBL Heidelberg

Henrik Bringmann, Simone Köhler, Georgia Rapti, Pavak Shah

OverviewOrganisers Overview OverviewOrganisers Overview Proof of COVID-19 vaccination or recovery is required to attend this on-site course. Please see EMBL’s COVID-19 safety policy for on-site events. Registration is not yet open for this event. If you are interested in receiving more information please register your interest. Course Overview During the past decades, the model organism C. elegans has emerged as a critical experimental model for a wide variety of research fields ranging from cell biology to developmental biology, neurobiology and aging. C. elegans uniquely combines a sequenced genome, advanced genetics, mapped anatomy, cell lineage and connectivity with recent whole-organism single-cell transcriptomics. Consequently, it displays a constant advent of new methodologies. Being equipped with state-of-the-art methodologies is key for newcomers entering these growing fields....

Course

EMBL Heidelberg

Registration
Will open shortly

17 July - 22 July 2022

Proteomics bioinformatics

17 July 20222022CourseEMBL-EBI

Juanita Riveros

This course provides hands-on training in the basics of mass spectrometry (MS) and proteomics bioinformatics, search engines and post-processing software, quantitative approaches, MS data repositories, the use of public databases for protein analysis, annotation of subsequent protein lists and incorporation of information from molecular interaction and pathway databases. This course provides hands-on training in the basics of mass spectrometry (MS) and proteomics bioinformatics, search engines and post-processing software, quantitative approaches, MS data repositories, the use of public databases for protein analysis, annotation of subsequent protein lists and incorporation of information from molecular interaction and pathway databases.

Course

EMBL-EBI

Registration
31 March 2022

17 July - 20 July 2022

Innate immunity in host-pathogen interactions

17 July 20222022ConferenceVirtual

Bernhard Hube, Julie Pfeiffer, Felix Randow, Feng Shao, Cyril Zipfel

OverviewSpeakersPreliminary Programme OverviewSpeakersPreliminary ProgrammePractical InformationSponsorsAbout Overview This conference will take place at EMBL Heidelberg, with the option to attend virtually. Proof of COVID-19 vaccination or recovery is required for on-site attendance. Please see EMBL’s COVID-19 terms and conditions.  Symposium Overview This symposium provides a discussion platform for all scientists interested in the biology of infection. Cell biologists, microbiologists and immunologists will discuss in joint sessions recent progress in our understanding of host-pathogen interactions. Talks will focus on common processes, rather than particular infectious agents or host cell types, and the strategies of all major types of pathogens in their interaction with plants and animals will be covered. A better understanding of infectious diseases will come from the simultaneous analysis of microbial and...

EMBO | EMBL Symposium

Virtual

Registration
10 July 2022
Abstract submission
24 April 2022

17 July - 20 July 2022

Innate immunity in host-pathogen interactions

17 July 20222022ConferenceEMBL Heidelberg

Bernhard Hube, Julie Pfeiffer, Felix Randow, Feng Shao, Cyril Zipfel

OverviewSpeakersPreliminary Programme OverviewSpeakersPreliminary ProgrammePractical InformationSponsorsAbout Overview This conference will take place at EMBL Heidelberg, with the option to attend virtually. Proof of COVID-19 vaccination or recovery is required for on-site attendance. Please see EMBL’s COVID-19 terms and conditions.  Symposium Overview This symposium provides a discussion platform for all scientists interested in the biology of infection. Cell biologists, microbiologists and immunologists will discuss in joint sessions recent progress in our understanding of host-pathogen interactions. Talks will focus on common processes, rather than particular infectious agents or host cell types, and the strategies of all major types of pathogens in their interaction with plants and animals will be covered. A better understanding of infectious diseases will come from the simultaneous analysis of microbial and...

EMBO | EMBL Symposium

EMBL Heidelberg

Registration
10 July 2022
Abstract submission
24 April 2022

25 July - 29 July 2022

Gene expression at single-cell resolution

25 July 20222022CourseOther

Vladmir Benes, Malte Paulsen

Overview Overview Overview Overview Proof of COVID-19 vaccination or recovery is required to attend this on-site course. Please see EMBL’s COVID-19 safety policy for on-site events. Registration is not yet open for this event. If you are interested in receiving more information please register your interest. Course overview The goal of this course is to provide participants with both the theory and practical skills required to design, prepare, run and analyze high-throughput single cell transcriptomic experiments using the Chromium Single Cell Controller from 10x Genomics. We will begin with a general introduction on the topic, including the cell partitioning technology, fundamentals of NGS, and the library preparation workflow. The hands-on session starts with cell handling followed by the preparation of transcriptome libraries from single-cells with a focus on best practices. Finally, we will...

Course

Other

Registration
Will open shortly

21 August - 29 August 2022

Advances in cryo-electron microscopy and 3D image processing

21 August 20222022CourseEMBL Heidelberg

Julia Mahamid, Sebastian Eustermann, Simone Mattei, Lori Passmore, Henning Stahlberg

This course provides the theoretical and practical foundations of advanced cryoEM techniques, from sample preparation to data collection to image processing. OverviewSpeakers and TrainersPreliminary ProgrammePractical InformationSponsors Overview Proof of COVID-19 vaccination or recovery is required to attend this on-site course. Please see EMBL’s COVID-19 safety policy for on-site events. Registration is not yet open for this event. If you are interested in receiving more information please register your interest. Course Overview Cryo-electron microscopy (cryoEM) has become the method of choice for determining atomic-level structures of large and flexible macromolecular assemblies that are notoriously difficult to study by other techniques. In addition, it has unique capabilities for obtaining structural information in situ, within complex (cellular) environments, and to deal with biologically heterogeneous samples. With the advent of the cryoEM “resolution revolution”, the method has undergone a tremendous growth in user base. Yet,...

EMBO Practical Course

EMBL Heidelberg

Registration
Will open shortly

27 August - 30 August 2022

Transcription and chromatin

27 August 20222022ConferenceEMBL Heidelberg

Karen Adelman, Eileen Furlong, Jürg Müller, Peter Verrijzer

OverviewSpeakersSponsors OverviewSpeakersSponsors Overview This conference will take place at EMBL Heidelberg, with the option to attend virtually. Proof of COVID-19 vaccination or recovery is required for on-site attendance. Please see EMBL’s COVID-19 terms and conditions. Registration is not yet open for this event. If you are interested in receiving more information please register your interest. Conference Overview The EMBL Transcription and Chromatin meeting has a long-standing tradition in shaping the field of transcriptional regulation. The meeting brings together leading experts covering all aspects of transcription including cis-regulatory function, long range regulation, 3-dimensional looping, the basal transcriptional machinery, RNA polymerase regulation and function, nucleosome positioning, chromatin modifications, chromatin remodelling and epigenetic inheritance of transcriptional silencing....

EMBL Conference

EMBL Heidelberg

Registration
Will open shortly

4 September - 13 September 2022

Current methods in cell biology

4 September 20222022CourseEMBL Heidelberg

Sara Cuylen-Häring, Simone Köhler

The major aim of the course is to allow participants to experience modern cell biology at work: not only to see but also to try out in practice how cutting-edge technologies can be used to answer questions at the frontiers of cell biology. It is a tradition that the entire faculty of the Cell Biology and Biophysics Unit of EMBL teaches the course to cover a broad spectrum of techniques. OverviewSpeakers and Trainers Sponsors Overview Proof of COVID-19 vaccination or recovery is required to attend this on-site course. Please see EMBL’s COVID-19 safety policy for on-site events. Registration is not yet open for this event. If you are interested in receiving more information please register your interest. Course Overview Experience modern cell biology at work: not only see but also try out in practice how cutting-edge technologies can be used to answer questions at the frontiers of cell biology. It is a tradition that the entire faculty of the Cell Biology and Biophysics Unit of EMBL teaches the course to cover a broad spectrum of techniques. The course also provides an excellent opportunity for participants and course faculty to discuss current and future challenges in cell biology. Audience The course will be primarily aimed at postdocs and advanced graduate...

EMBO Practical Course

EMBL Heidelberg

Registration
Will open shortly


5 September - 8 September 2022

Chemical biology 2022

5 September 20222022ConferenceEMBL Heidelberg

Yimon Aye, Claire Deo, Kai Johnsson, Edward Lemke

OverviewSpeakersPreliminary Programme OverviewSpeakersPreliminary ProgrammeSponsors Overview Registration is not yet open for this event. If you are interested in receiving more information please register your interest. This conference will take place at EMBL Heidelberg, with the option to attend virtually. Proof of COVID-19 vaccination or recovery is required for on-site attendance. Please see EMBL’s COVID-19 terms and conditions. Conference Overview The conference sets the stage for the dissemination and exchange of new developments in diverse, hot fields within chemical biology. It is the largest and longest standing conference in the field, being a platform for inspiration, collaboration and networking for researchers in academia and industry. We aim to provide the possibility for every chemical biologist to meet and discuss with peers topics ranging from tool development to biological applications, from...

EMBO Workshop

EMBL Heidelberg

Registration
Will open shortly

11 September - 18 September 2022

Synthetic biology in action: beyond standard metabolism

11 September 20222022CourseEMBL Heidelberg

Sven Panke, Vitor Pinheiro, Karen Polizzi, Elisabeth Zielonka

OverviewSpeakers and TrainersSponsors OverviewSpeakers and TrainersSponsors Overview Registration is not yet open for this event. If you are interested in receiving more information please register your interest. Course Overview Synthetic Biology (SynBio) has become a rapidly developing area for tackling a large number of challenges in life science research. This is due to a combination of foundational advances in technologies such as large-scale DNA synthesis and new methods that allow integrating such raw synthesis power into engineering approaches, including genome wide small RNA regulation, dCas9-based regulation, and multiplexed genome engineering. Such fresh approaches fuel new types of biotechnological applications with immense impact o both fundamental science and society This course will provide the best and most exciting novelties in the field and focus on exploiting tools and concepts of SynBio for multi-scale...

EMBO Practical Course

EMBL Heidelberg

Registration
Will open shortly

12 September - 16 September 2022

Mathematics of life: modelling molecular mechanisms

12 September 20222022CourseEMBL-EBI

EMBL-EBI Training team

This course will provide participants with an introduction and hands-on training on modelling approaches, tools and resources used in systems biology as well as touch on network analysis. Computer models are increasingly used to understand the essential processes of biology. Researchers in academic institutions as well as the pharmaceutical industry use mathematical models to generate hypotheses on how complex biomolecular systems work. Modelling of biochemical pathways deregulated in disease conditions can offer mechanistic insights into the pathology, help to elucidate mechanisms behind drug action, and predict the dose required for treatment thus facilitating fundamental research and drug discovery. This course will provide a helpful introduction to tools and resources used in this scientific field. The concrete programme for this course is currently under development and will be displayed here as soon as it is available. To keep informed of all changes to the course and to find out when the course opens for applications, please register your interest. This course will provide participants with an introduction and hands-on training on modelling approaches, tools and resources used in systems biology as well as touch on network analysis. Computer models are increasingly used to understand the essential processes of biology. Researchers in academic institutions as well as the pharmaceutical industry use mathematical models to generate hypotheses on how complex biomolecular systems work. Modelling of biochemical pathways deregulated in disease conditions can offer mechanistic insights into the pathology, help to elucidate mechanisms behind drug action, and predict the dose required for treatment thus facilitating fundamental research and drug discovery. This course will provide a helpful introduction to tools and resources used in this scientific field. The concrete programme for this course is currently under development and will be...

Course

EMBL-EBI

Registration
03 June 2022

13 September - 16 September 2022

Reconstructing the human past: using ancient and modern genomics

13 September 20222022ConferenceEMBL Heidelberg

Johannes Krause, Anna-Sapfo Malaspinas, Ida Moltke, David Reich

The study of population genetic variation and the sequencing of ancient DNA represent promising new avenues for investigating human history and our evolutionary past. Population-scale sequencing projects investigating human diversity have provided us with more than a million genome wide datasets that allowed new insights into patterns of human variation and mobility, while others have obtained genome wide data from thousands of ancient human skeletons, allowing the investigation of human evolution in action and providing direct insights into population genetic dynamics in situ. OverviewSpeakers and OrganisersSponsorsAbout Overview Registration is not yet open for this event. If you are interested in receiving more information please register your interest. Symposium Overview The study of population genetic variation and the sequencing of ancient DNA represent promising new avenues for investigating human history and our evolutionary past. Population-scale sequencing projects investigating human diversity have provided us with more than a million genome wide datasets that allowed new insights into patterns of human variation and mobility, while others have obtained genome wide data from thousands of ancient human skeletons, allowing the investigation of human evolution in action and providing direct insights into population genetic dynamics in situ. Large-scale genetic variation data sets can now be integrated with genomics data from ancient remains and history...

EMBO | EMBL Symposium

EMBL Heidelberg

Registration
Will open shortly

19 September - 24 September 2022

Imaging down to single-molecule resolution: STED and MINFLUX nanoscopy

19 September 20222022CourseEMBL Heidelberg

Overview Overview Overview Overview Proof of COVID-19 vaccination or recovery is required to attend this on-site course. Please see EMBL’s COVID-19 safety policy for on-site events. Registration is not yet open for this event. If you are interested in receiving more information please register your interest.

Course

EMBL Heidelberg

Registration
Will open shortly

26 September - 30 September 2022

Bioinformatics and functional genomics in zebrafish

26 September 20222022CourseEMBL-EBI

EMBL-EBI Training team

Zebrafish are widely used to study development, toxicity and disease, and functional genomics is used throughout the field to identify new pathways and mechanisms and for comparison to other model systems and humans. In this hands-on course, participants will learn how to design functional genomics experiments, manage and analyse RNA-seq datasets from zebrafish, and compare results to other species. The aim of the course is to equip researchers with tools to carry out functional analysis and data visualisation of RNA-seq data that has already been mapped to the genome and been analysed for differential gene expression. The course will be relevant to researchers working on a wide range of topics and will use real datasets from our lab for hands-on analysis. Who is this course for? This course is aimed at researchers currently working with zebrafish and generating genomic and functional data. Graduate students, postdoctoral fellows, research scientists and faculty are encouraged to apply.  Little to no experience with RNA-seq analysis is required, however, applicants who have already generated an RNA-seq dataset from zebrafish samples relevant to their project will gain the most benefit from this course.  Some experience with R is beneficial. Please note this information is from the 2019 course edition and may change slightly for the course taking place in 2022.  Zebrafish are widely used to study development, toxicity and disease, and functional genomics is used throughout the field to identify new pathways and mechanisms and for comparison to other model systems and humans. In this hands-on course, participants will learn how to design functional genomics experiments, manage and analyse RNA-seq datasets from zebrafish, and compare results to other species. The aim of the course is to equip researchers with tools to carry out functional analysis and data visualisation of RNA-seq data that has already been mapped to the genome and been analysed for differential gene expression. The course will be relevant to researchers working on a wide range of topics and will use real datasets from our lab for hands-on analysis. Who is this course for? This course is aimed at researchers currently working with zebrafish and generating genomic and functional...

Course

EMBL-EBI

Registration
17 June 2022

3 October - 7 October 2022

Single-cell RNA-seq analysis using R

3 October 20222022CourseEMBL-EBI

EMBL-EBI Training team

This course covers the analysis of scRNA-seq data using R and command line tools. Participants will be guided through droplet-based scRNA-seq analysis pipelines from raw reads to cell clusters. They will explore and interpret data using R as well as the Single Cell Expression Atlas. Finally participants will put their knowledge into practice through a group challenge on the last two days of the course. Please note that participants will not analyse their own data as part of the course. There will, however, be ample opportunity to discuss their research and ideas with other course participants and trainers. Please note that the dates set for this 2022 course are subject to change, but all changes will be reflected on this course page. To keep informed of changes to the course and to find out when the course opens for applications, please register your interest.  Full programme details will be added in due course.   This course covers the analysis of scRNA-seq data using R and command line tools. Participants will be guided through droplet-based scRNA-seq analysis pipelines from raw reads to cell clusters. They will explore and interpret data using R as well as the Single Cell Expression Atlas. Finally participants will put their knowledge into practice through a group challenge on the last two days of the course. Please note that participants will not analyse their own data as part of the course. There will, however, be ample opportunity to discuss their research and ideas with other course participants and trainers. Please note that the dates set for this 2022 course are subject to change, but all changes will be reflected on this course page. To keep informed of changes to the course and to find out when the course opens for applications, please register your interest. Full programme details will...

Course

EMBL-EBI

Registration
24 June 2022

5 October - 8 October 2022

Molecular mechanisms in evolution and ecology

5 October 20222022ConferenceEMBL Heidelberg

Gianni Liti, Sara Mitri, Kiran Patil, Kimberley Kline, Antonis Rokas

OverviewSponsors Overview < OverviewSponsors Overview This conference will take place at EMBL Heidelberg, with the option to attend virtually. Proof of COVID-19 vaccination or recovery is required for on-site attendance. Please see EMBL’s COVID-19 safety policy for on-site events.  Registration is not yet open for this event. If you are interested in receiving more information please register your interest. Conference Overview This conference series has become known for exploring yeasts as models to study questions of general relevance to evolution and ecology. Experts will speak on a range of topics, including evolution theory, ecology, genetics, cell biology, genomics, systems biology, metabolic modelling and engineering. The focus of this conference will be on comparative and experimental strategies to explore evolutionary questions, from field studies to computer simulations to comparative...

EMBO Workshop

EMBL Heidelberg

Registration
Will open shortly

9 October - 14 October 2022

Genome engineering: CRISPR/Cas from cells to mice

9 October 20222022CourseEMBL Heidelberg

N. Humphreys, B. Koch, P. Rajakannu, E. Zielonka

This course will provide training in genome editing and cell engineering in mammalian cells and mouse embryos using the highly efficient CRISPR/Cas9 system. OverviewSponsors Overview Registration is not yet open for this event. If you are interested in receiving more information please register your interest. Course Overview This course will provide training in genome editing and cell engineering in mammalian cells and mouse embryos using the highly efficient CRISPR/Cas9 system. Participants will learn design of CRISPR targets using bioinformatics tools, generation of gene knock-outs/knock-ins, and target validation using the most current technologies. The course will be split into two groups (mammalian cells OR mice) based on participants’ expertise. Please note that all participants are expected to engage in all sessions. Particpants should plan for approximately 1 hour extra per day for self paced learning modules. Audience This course is aimed at researchers who are familiar with basic molecular and cell biology...

Course

EMBL Heidelberg

Registration
Will open shortly

12 October - 15 October 2022

The complex life of RNA

12 October 20222022ConferenceEMBL Heidelberg

Anne Ephrussi, Wendy V. Gilbert, Torben Heick Jensen, Ramesh Pillai

OverviewSponsorsAbout OverviewSponsorsAbout Overview Registration is not yet open for this event. If you are interested in receiving more information please register your interest. Conference Overview Before the genetic information stored in DNA can be used to direct cell growth and metabolism, it has to be transferred into RNA. Messenger RNAs (mRNAs) that code for proteins and noncoding RNAs are key components in the transmission of genetic information in all life forms – from viruses to complex mammalian organisms. Exciting recent findings now reveal a new layer of information added to RNAs in the form of chemical marks (the epitranscriptome) that play a critical role in gene expression control. Following the great success of the virtual 2020 edition of this long-standing symposium, we are looking forward to returning to an in-person meeting for 2022, bringing together leaders in the RNA field,...

EMBO | EMBL Symposium

EMBL Heidelberg

Registration
Will open shortly

16 October - 21 October 2022

Metabolite and species dynamics in microbial communities

16 October 20222022CourseEMBL Heidelberg

Sandeep Krishna, Sunil Krishna, Kiran Patil, Elisabeth Zielonka, Maria Zimmermann

OverviewSponsors Overview < OverviewSponsors Overview Registration is not yet open for this event. If you are interested in receiving more information please register your interest. Course Overview Metagenomics studies are rapidly uncovering the compositional richness of microbial communities in diverse habitats ranging from the oceans to the human gut. While their fundamental role in our health and environment is undeniable, there is an urgent need for unravelling molecular mechanisms underlying the dynamics of these communities. This requires a combined experimental and computational approach. Recent studies (including those from the organisers’ and speakers’ labs) have underlined the success of such integrative approaches. For example, emergence of cell subpopulations (Varahan et al. eLife 2019, 2020), and long-term stability (Blasche, Kim et al. Nat Microbiol. 2021) through metabolic cross-feeding.As...

EMBO Practical Course

EMBL Heidelberg

Registration
Will open shortly

17 October - 21 October 2022

Structural bioinformatics

17 October 20222022CourseVirtual

EMBL-EBI Training team

Please note that the dates set for this 2022 course are subject to change, but all changes will be reflected on this course page.  We are at this stage unable to confirm whether this course will be running onsite at Hinxton or will be delivered virtually. To keep informed of all changes to the course and to find out when the course opens for applications, please register your interest. Please note that the dates set for this 2022 course are subject to change, but all changes will be reflected on this course page. We are at this stage unable to confirm whether this course will be running onsite at Hinxton or will be delivered virtually. To keep informed of all changes to the course and to find out when the course opens for applications, please register your interest.

Course

Virtual

Registration
08 July 2022

26 October - 29 October 2022

Plasticity across scales: from molecules to phenotypes

26 October 20222022ConferenceEMBL Heidelberg

Ehab Abouheif, Alexander Aulehla, Axel Meyer, Sonia Sultan

OverviewSpeakersSponsors OverviewSpeakersSponsorsAbout Overview This conference will take place at EMBL Heidelberg, with the option to attend virtually. Proof of COVID-19 vaccination or recovery is required for on-site attendance. Please see EMBL’s COVID-19 terms and conditions. Registration is not yet open for this event. If you are interested in receiving more information please register your interest. Symposium Overview This symposium aims to bring together a diverse group of scientists to discuss phenotypic, developmental and transgenerational plasticity from a wide range of disciplines and perspectives, focusing on its underlying molecular mechanisms and its role in driving evolutionary novelty. The meeting is designed to provide an interactive platform for scientists who share a common interest in plasticity but usually do not meet, within an intensive conference setting.  Speakers Ian Baldwin...

EMBO | EMBL Symposium

EMBL Heidelberg

Registration
Will open shortly

30 October - 4 November 2022

The fundamentals of high-end cell sorting

30 October 20222022CourseEMBL Heidelberg

Derek Davis, Andrew Filby, Diana Ordoñez-Rueda, Malte Paulsen, Steffen Schmitt

OverviewSponsors Overview < OverviewSponsors Overview Registration is not yet open for this event. If you are interested in receiving more information please register your interest. Course Overview This course on the fundamentals of high-end cell sorting will enable scientists to properly use the global upstream technology of cell sorting with high confidence. Cell sorting is essential to many studies, but researchers outside of core facilities have very limited knowledge how exactly sorting works and unknowingly produce erroneous samples or even scientifically crippling data. Audience The course is intended for PhD students and postdocs who are starting to use, or already using flow cytometry based cell sorting in their research projects. Applicants with some previous active knowledge of basic principles of flow cytometry and a regular use of flow cytometers in daily research will profit most from the content of...

EMBO Practical Course

EMBL Heidelberg

Registration
Will open shortly

31 October - 4 November 2022

Metagenomics bioinformatics

31 October 20222022CourseVirtual

EMBL-EBI Training team

Please note that the dates set for this 2022 course are subject to change, but all changes will be reflected on this course page.  We are at this stage unable to confirm whether this course will be running onsite at Hinxton or will be delivered virtually. To keep informed of all changes to the course and to find out when the course opens for applications, please register your interest. Please note that the dates set for this 2022 course are subject to change, but all changes will be reflected on this course page. We are at this stage unable to confirm whether this course will be running onsite at Hinxton or will be delivered virtually. To keep informed of all changes to the course and to find out when the course opens for applications, please register your interest.

Course

Virtual

Registration
15 July 2022

7 November - 10 November 2022

The neurovascular interface

7 November 20222022ConferenceEMBL Heidelberg

Amparo Acker-Palmer, Ralf Adams, Chenghua Gu

In this symposium, we bring together researchers from vascular biology and neurobiology to foster interdisciplinary exchange and new emerging concepts on how vascular and nervous systems crosstalk to maintain organ homeostasis and function. OverviewSpeakersSponsorsAbout Overview Registration is not yet open for this event. If you are interested in receiving more information please register your interest. Symposium Overview Neurovascular biology is a young, emerging field that aims to unravel the molecular communication between the nervous system and the vasculature. Both the nervous system and the vascular system share striking conceptual similarities in the assembly of cellular networks through guided growth and branching processes. Vascular and neural cells work together to form a number of functional tissue compartments. Endothelial cells, certain mural support cells (i.e., pericytes), astrocytes and neurons assemble the neurovascular unit, which establishes the blood-brain and blood-retina barriers. In fact, many of the most debilitating neurodegenerative diseases and cognitive decline involve disruption of the...

EMBO | EMBL Symposium

EMBL Heidelberg

Registration
Will open shortly

11 November - 13 November 2022

Practical integrative structural biology

11 November 20222022CourseEMBL Hamburg

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EMBO Practical Course

EMBL Hamburg

Registration
Will open shortly

13 November - 18 November 2022

Single-cell omics: deeper to genomics

13 November 20222022CourseEMBL Heidelberg

Qiaolin Deng, Jan O. Korbel, Anders Ståhlberg, Elisabeth Zielonka

OverviewSponsors Overview < OverviewSponsors Overview Proof of COVID-19 vaccination or recovery is required to attend this on-site course. Please see EMBL’s COVID-19 safety policy for on-site events. Registration is not yet open for this event. If you are interested in receiving more information please register your interest. Course Overview Single-cell analysis is a rapidly evolving approach and is increasingly implemented in various research fields. The numerous workflows contain several critical and challenging steps from cell sampling over working with minute amounts of sample to data analysis and integration. This hands-on course will cover latest cutting-edge techniques in single cell genomics (Strand-Seq), single cell epigenetics (single-cell bisulfite sequencing) and microdroplet based single-cell transcriptomics (scRNA-Seq) during the wet-lab practical sessions. The computational part will address...

Course

EMBL Heidelberg

Registration
Will open shortly

14 November - 18 November 2022

Genome bioinformatics: resequencing and variant calling

14 November 20222022CourseVirtual

EMBL-EBI Training team

Please note that the dates set for this 2022 course are subject to change, but all changes will be reflected on this course page.  We are at this stage unable to confirm whether this course will be running onsite at Hinxton or will be delivered virtually. To keep informed of all changes to the course and to find out when the course opens for applications, please register your interest. Please note that the dates set for this 2022 course are subject to change, but all changes will be reflected on this course page. We are at this stage unable to confirm whether this course will be running onsite at Hinxton or will be delivered virtually. To keep informed of all changes to the course and to find out when the course opens for applications, please register your interest.

Course

Virtual

Registration
29 July 2022

15 November - 18 November 2022

From functional genomics to systems biology

15 November 20222022ConferenceEMBL Heidelberg

Arnaud Krebs, Prisca Liberali, Mikhail Savitski, Georg Seelig

OverviewSponsors Overview < OverviewSponsors Overview Registration is not yet open for this event. If you are interested in receiving more information please register your interest. Conference Overview Recent advances in genomics and proteomics technologies have transformed our ability to study diverse molecular processes. We can now use these technologies to study and understand mechanisms regulating transcription, translation, protein abundance, protein-protein, protein-metabolites and protein-drug interactions at a genome- and proteome-wide scale. The current challenge is to convert this data into predictive quantitative models of cellular processes. This massive task requires intensive integration of basic biology, genomics, proteomics, imaging, computational biology, mathematics, engineering and physics. This conference brings together scientists from diverse fields to promote cross-disciplinary collaborations...

EMBO Workshop

EMBL Heidelberg

Registration
Will open shortly

23 November - 24 November 2022

Terra incognita: navigating ethical boundaries in the life sciences

23 November 20222022ConferenceEMBL Heidelberg

Lucia von Bredow

OverviewMedia Partners Overview< OverviewMedia Partners Overview Registration is not yet open for this event. If you are interested in receiving more information please register your interest. Media Partners EMBO reports, an EMBO Press journal Open Biology, a Royal Society journal

23rd EMBL Science and Society Conference

EMBL Heidelberg

Registration
Will open shortly

28 November - 2 December 2022

Protein quality control for downstream processes

28 November 20222022CourseEMBL Heidelberg

Karine Lapouge, Kim Remans

The course will focus on the importance of protein quality control and introduce methodologies that can be used to assess and improve sample quality OverviewScientific OrganisersSponsors Overview Proof of COVID-19 vaccination or recovery is required to attend this on-site course. Please see EMBL’s COVID-19 safety policy for on-site events. Registration is not yet open for this event. If you are interested in receiving more information please register your interest. Course Overview Purified proteins are used in many biological experiments, including for structure determination, studying protein interactions, identifying drug metabolism and specificity, mechanistic studies, in vivo experiments and many other applications. In order for these experiments to be biologically relevant, they must be performed using high quality protein that is correctly folded, active, contains properly inserted cofactors and is in the correct oligomeric state. Ensuring that these parameters are fulfilled requires protein quality control. In this...

EMBL Course

EMBL Heidelberg

Registration
Will open shortly

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