Biophysics of organoids.

Weichselberger V, Moore G, Tlili S, Merkel M, Lenne PF, Trivedi V

Developmental cell, 2026

doi:10.1016/j.devcel.2025.11.008.

ETS-guided iPSC-endothelial models recapitulate malaria pathogenesis.

Korbmacher F, Fleckenstein H, Long R, Poliński P, Piatti L, López-Gutiérrez B, Batzilla A, Crusius D, Trivedi V, Ebisuya M, Bernabeu M

bioRxiv, 2025

doi:10.1101/2025.07.01.662615.

Glycolytic activity instructs germ layer proportions through regulation of Nodal and Wnt signaling.

Stapornwongkul KS, Hahn E, Poliński P, Salamó Palau L, Arató K, Yao L, Williamson K, Gritti N, Anlas K, Osuna Lopez M, Patil KR, Ebisuya M, Trivedi V

Cell stem cell, 2025

doi:10.1016/j.stem.2025.03.011.

Three Decades of the Spanish Society for Developmental Biology (SEBD): Insights and Emerging Perspectives from the 18th Spanish Society for Developmental Biology Meeting (SEBD 2024).

Herrera E, Acosta S, Almuedo M, Borrell V, Cañestro C, Casas-Tintó S, Escudero LM, Gorfinkiel N, Hoijman E, Pastor-Pareja JC, Pernaute B, Rayón T, Saade M, Solana J, Trivedi V, Martí E, Pujades C, Araújo SJ

The International journal of developmental biology, 2025

doi:10.1387/ijdb.250034sa.

Cell-cell communication controls the timing of gastruloid symmetry-breaking.

Oriola D, Torregrosa-Cortés G, Arató K, Fernández-Munuera D, Hahn ME, Anlaş K, Garcia-Ojalvo J, Trivedi V

bioRxiv, 2024

doi:10.1101/2024.12.16.628776.

Early autonomous patterning of the anteroposterior axis in gastruloids.

Anlaş K, Gritti N, Nakaki F, Salamó Palau L, Tlili SL, Oriola D, Arató K, Le Lim J, Sharpe J, Trivedi V

Development (Cambridge, England), 2024

doi:10.1242/dev.202171.

The people behind the papers - Kerim Anlaş and Vikas Trivedi.

Anlaş K, Trivedi V

Development (Cambridge, England), 2024

doi:10.1242/dev.204481.

Mapping morphogenesis and mechanics in embryo models.

Liu ZY, Trivedi V, Heemskerk I

Nature methods, 2023

doi:10.1038/s41592-023-02079-4.

Metabolic control of germ layer proportions through regulation of Nodal and Wnt signalling.

Stapornwongkul KS, Hahn E, Palau LS, Arato K, Gritti N, Anlas K, Poliński P, Lopez OM, Eibisuya M, Trivedi V

bioRxiv, 2023

doi:10.1101/2023.12.04.569862.

Local cellular interactions during the self-organization of stem cells.

Schröter C, Stapornwongkul KS, Trivedi V

Current Opinion in Cell Biology, 2023

doi:10.1016/j.ceb.2023.102261.

Single-cell Bayesian deconvolution.

Torregrosa-Cortés G, Oriola D, Trivedi V, Garcia-Ojalvo J

iScience, 2023

doi:10.1016/j.isci.2023.107941.

A stem cell zoo uncovers intracellular scaling of developmental tempo across mammals.

Lázaro J, Costanzo M, Sanaki-Matsumiya M, Girardot C, Hayashi M, Hayashi K, Diecke S, Hildebrandt TB, Lazzari G, Wu J, Petkov S, Behr R, Trivedi V, Matsuda M, Ebisuya M

Cell Stem Cell, 2023

doi:10.1016/j.stem.2023.05.014.

Understanding the interplay of membrane trafficking, cell surface mechanics, and stem cell differentiation.

Li JH, Trivedi V, Diz-Muñoz A

Seminars in cell & developmental biology, 2022

doi:10.1016/j.semcdb.2022.05.010.

Arrested coalescence of multicellular aggregates.

Oriola D, Marin-Riera M, Anlaş K, Gritti N, Sanaki-Matsumiya M, Aalderink G, Ebisuya M, Sharpe J, Trivedi V

Soft matter, 2022

doi:10.1039/d2sm00063f.

Periodic formation of epithelial somites from human pluripotent stem cells.

Sanaki-Matsumiya M, Matsuda M, Gritti N, Nakaki F, Sharpe J, Trivedi V, Ebisuya M

Nature communications, 2022

doi:10.1038/s41467-022-29967-1.

Sculpting tissues by phase transitions.

Lenne PF, Trivedi V

Nature communications, 2022

doi:10.1038/s41467-022-28151-9.

Sculpting with stem cells: how models of embryo development take shape.

Veenvliet JV, Lenne PF, Turner DA, Nachman I, Trivedi V

Development (Cambridge, England), 2021

doi:10.1242/dev.192914.

linus: conveniently explore, share, and present large-scale biological trajectory data in a web browser.

Waschke J, Hlawitschka M, Anlas K, Trivedi V, Roeder I, Huisken J, Scherf N

PLoS computational biology, 2021

doi:10.1371/journal.pcbi.1009503.

MOrgAna: accessible quantitative analysis of organoids with machine learning.

Gritti N, Lim JL, Anlaş K, Pandya M, Aalderink G, Martínez-Ara G, Trivedi V

Development (Cambridge, England), 2021

doi:10.1242/dev.199611.

Studying evolution of the primary body axis in vivo and in vitro.

Anlas K, Trivedi V

eLife, 2021

doi:10.7554/eLife.69066.

Dynamics of anteroposterior axis establishment in a mammalian embryo-like system.

Anlas K, Gritti N, Oriola D, Arató K, Nakaki F, Lim JL, Sharpe J, Trivedi V

2021

doi:10.1101/2021.02.24.432766.

Gastruloids: embryonic organoids from mouse embryonic stem cells to study patterning and development in early mammalian embryos.

Anlas K, Baillie-Benson P, Arató K, Turner DA, Trivedi V

Methods in molecular biology (Clifton, N.J.), 2020

doi:10.1007/978-1-0716-1174-6_10.

Rethinking embryology in vitro: a synergy between engineering, data science and theory.

Gritti N, Oriola D, Trivedi V

Developmental biology, 2020

doi:10.1016/j.ydbio.2020.10.013.

Imaging the beating heart with macroscopic phase stamping.

Trivedi V, Madaan S, Holland DB, Trinh LA, Fraser SE, Truong TV,

2020

doi:https://arxiv.org/abs/2011.01688.

Self-organised symmetry breaking in zebrafish reveals feedback from morphogenesis to pattern formation.

Trivedi V, Fulton T, Attardi A, Anlas K, Dingare C, Martinez-Arias A, Steventon B

2019

doi:https://doi.org/10.1101/769257.

Tissue 'melting' sculpts embryo.

Lenne PF, Trivedi V

Nature, 2018

doi:10.1038/d41586-018-06108-7.

Multidimensional quantitative analysis of mRNA expression within intact vertebrate embryos.

Trivedi V, Choi HMT, Fraser SE, Pierce NA

Development (Cambridge, England), 2018

doi:10.1242/dev.156869.

Anteroposterior polarity and elongation in the absence of extra-embryonic tissues and of spatially localised signalling in gastruloids: mammalian embryonic organoids.

Turner DA, Girgin M, Alonso-Crisostomo L, Trivedi V, Baillie-Johnson P, Glodowski CR, Hayward PC, Collignon J, Gustavsen C, Serup P, Steventon B, P Lutolf M, Arias AM

Development (Cambridge, England), 2017

doi:10.1242/dev.150391.

Hyperspectral phasor analysis enables multiplexed 5D in vivo imaging.

Cutrale F, Trivedi V, Trinh LA, Chiu CL, Choi JM, Artiga MS, Fraser SE

Nature methods, 2017

doi:10.1038/nmeth.4134.

Spatio-Temporal Differences in Dystrophin Dynamics at mRNA and Protein Levels Revealed by a Novel FlipTrap Line.

Ruf-Zamojski F, Trivedi V, Fraser SE, Trinh le A

PloS one, 2015

doi:10.1371/journal.pone.0128944.

Dynamic structure and protein expression of the live embryonic heart captured by 2-photon light sheet microscopy and retrospective registration.

Trivedi V, Truong TV, Trinh le A, Holland DB, Liebling M, Fraser SE

Biomedical optics express, 2015

doi:10.1364/BOE.6.002056.

Dynamic imaging of the growth plate cartilage reveals multiple contributors to skeletal morphogenesis.

Li Y, Trivedi V, Truong TV, Koos DS, Lansford R, Chuong CM, Warburton D, Moats RA, Fraser SE

Nature communications, 2015

doi:10.1038/ncomms7798.

Localizing transcripts to single cells suggests an important role of uncultured deltaproteobacteria in the termite gut hydrogen economy.

Rosenthal AZ, Zhang X, Lucey KS, Ottesen EA, Trivedi V, Choi HM, Pierce NA, Leadbetter JR

Proceedings of the National Academy of Sciences of the United States of America, 2013

doi:10.1073/pnas.1307876110.