Fragkou P, Martakos I, Rouni G, Vasilakos D, Koutsoukos E, Saviane A, Cappellozza S, Thomaidis NS, Kostakis MG, Samiotaki M, Kotsiantis S, Barcenas M, Dedos SG
Scientific data,
2025
doi:10.1038/s41597-025-06071-9.
Sharma K, Hansen J, Susztak K, Eberlin L, Anderton CR, Alexandrov T, Iyengar R
Nature reviews. Nephrology,
2025
doi:10.1038/s41581-025-01007-3.
Delafiori J, Shahraz M, Eisenbarth A, Hilsenstein V, Drotleff B, Bailoni A, Wadie B, Ekelöf M, Mattausch A, Alexandrov T
Cell,
2025
doi:10.1016/j.cell.2025.08.015.
Su M, Drotleff B, Janker T, Bürger Z, Kimmig AS, Derntl B, Lämmerhofer M
Analytical chemistry,
2025
doi:10.1021/acs.analchem.5c01912.
Figueiredo A, Rastogi ST, Ramos S, Nogueira F, De Villiers K, de Sousa AGG, Votborg-Novél L, von Wedel C, Tober-Lau P, Jentho E, Pagnotta S, Mesquita M, Cardoso S, Bortolussi G, Muro AF, Tranfield EM, Thibaud J, Duarte D, Sousa AL, Pinto SN, Kitoko J, Mombo-Ngoma G, Mischlinger J, Junttila S, Alenquer M, Amorim MJ, Vasavda C, Bosma PJ, Violante S, Drotleff B, Paixão T, Portugal S, Kurth F, Elo LL, Paul BD, Martins R, Soares MP
Science (New York, N.Y.),
2025
doi:10.1126/science.adq6741.
Farooq A, Drotleff B, Kroemer N, Han ML, Li J, Decousser JW, Schrey D, Buyck J, Grégoire N, Nordmann P, Wicha SG
International journal of antimicrobial agents,
2025
doi:10.1016/j.ijantimicag.2025.107457.
Richiardone E, Giolito MV, Al Roumi R, Ambroise J, Boidot R, Drotleff B, Ghesquière B, Lupo B, Trusolino L, Bardelli A, Arena S, Feron O, Corbet C
Cancer letters,
2025
doi:10.1016/j.canlet.2025.217512.
Rackov N, Janßen N, Akkache A, Drotleff B, Beyer B, Scoppola E, Vrana NE, Hengge R, Bidan CM, Hathroubi S
Biofilm,
2025
doi:10.1016/j.bioflm.2025.100276.
Xing S, Charron-Lamoureux V, Ekelöf M, El Abiead Y, Yu H, Fiehn O, Alexandrov T, Dorrestein PC
bioRxiv,
2025
doi:10.1101/2024.10.14.618269.
Wadie B, Stuart L, Rath CM, Drotleff B, Mamedov S, Alexandrov T
Nature communications,
2024
doi:10.1038/s41467-024-52213-9.
Dekina S, Alexandrov T, Drotleff B
Metabolomics : Official journal of the Metabolomic Society,
2024
doi:10.1007/s11306-024-02176-1.
Shesterenko Y, Shesterenko Y, Romanovska I, Semenishyn N, Smola S, Dekina S
ChemistrySelect,
2024
doi:10.1002/slct.202305224.
Richiardone E, Al Roumi R, Lardinois F, Giolito MV, Ambroise J, Boidot R, Drotleff B, Ghesquière B, Bellahcène A, Bardelli A, Arena S, Corbet C
Cancer letters,
2024
doi:10.1016/j.canlet.2024.217091.
Cosgrove J, Marçais A, Hartmann FJ, Bergthaler A, Zanoni I, Corrado M, Perié L, Cabezas-Wallscheid N, Bousso P, Alexandrov T, Kielian T, Martínez-Martín N, Opitz CA, Lyssiotis CA, Argüello RJ, Van den Bossche J
Nature metabolism,
2024
doi:10.1038/s42255-024-01031-w.
Saharuka V, Vieira LM, Stuart L, Ekelöf M, Molenaar MR, Bailoni A, Ovchinnikova K, Soltwisch J, Bausbacher T, Jakob D, King M, Müller MA, Oetjen J, Pace C, Pinto FE, Strittmatter N, Velickovic D, Spengler B, Muddiman DC, Liebeke M, Janfelt C, Goodwin R, Eberlin LS, Anderton CR, Hopf C, Dreisewerd K, Alexandrov T
bioRxiv,
2024
doi:10.1101/2024.01.29.577354.
Ruperti F, Becher I, Stokkermans A, Wang L, Marschlich N, Potel C, Maus E, Stein F, Drotleff B, Schippers KJ, Nickel M, Prevedel R, Musser JM, Savitski MM, Arendt D
Current biology : CB,
2023
doi:10.1016/j.cub.2023.12.021.
Alexandrov T
Nature metabolism,
2023
doi:10.1038/s42255-023-00881-0.
Mitosch K, Beyß M, Phapale P, Drotleff B, Nöh K, Alexandrov T, Patil KR, Typas A
PLoS biology,
2023
doi:10.1371/journal.pbio.3002198.
Goldschmied A, Drotleff B, Winter S, Schaeffeler E, Schwab M, Gawaz M, Geisler T, Rath D
BMC Cardiovascular Disorders,
2023
doi:10.1186/s12872-023-03362-0.
Gandara L, Tsai A, Ekelöf M, Galupa R, Preger-Ben Noon E, Alexandrov T, Crocker J
Cell reports,
2022
doi:10.1016/j.celrep.2022.111832.
Das A, Thapa P, Santiago U, Shanmugam N, Banasiak K, Dąbrowska K, Nolte H, Szulc NA, Gathungu RM, Cysewski D, Krüger M, Dadlez M, Nowotny M, Camacho CJ, Hoppe T, Pokrzywa W
The EMBO journal,
2022
doi:10.15252/embj.2021109566.
Li Y, Kuhn M, Zukowska-Kasprzyk J, Hennrich ML, Kastritis PL, O'Reilly FJ, Phapale P, Beck M, Gavin AC, Bork P
PloS one,
2021
doi:10.1371/journal.pone.0254429.
Shlemov A, Alexandrov T, Golyandina N, Holloway D, Baumgartner S, Spirov AV
PloS one,
2021
doi:10.1371/journal.pone.0244701.
Stavrovskaya IG, Gathungu RM, Bird SS, Kristal BS
Methods in molecular biology (Clifton, N.J.),
2021
doi:10.1007/978-1-0716-1262-0_24.
Veličković D, Bečejac T, Mamedov S, Sharma K, Ambalavanan N, Alexandrov T, Anderton CR
Analytical chemistry,
2021
doi:10.1021/acs.analchem.1c02347.
Klünemann M, Andrejev S, Blasche S, Mateus A, Phapale P, Devendran S, Vappiani J, Simon B, Scott TA, Kafkia E, Konstantinidis D, Zirngibl K, Mastrorilli E, Banzhaf M, Mackmull MT, Hövelmann F, Nesme L, Brochado AR, Maier L, Bock T, Periwal V, Kumar M, Kim Y, Tramontano M, Schultz C, Beck M, Hennig J, Zimmermann M, Sévin DC, Cabreiro F, Savitski MM, Bork P, Typas A, Patil KR
Nature,
2021
doi:10.1038/s41586-021-03891-8.
Cable J, Pourquié O, Wellen KE, Finley LWS, Aulehla A, Gould AP, Teleman A, Tu WB, Garrett WS, Miguel-Aliaga I, Perrimon N, Hooper LV, Walhout AJM, Wei W, Alexandrov T, Erez A, Ralser M, Rabinowitz JD, Hemalatha A, Gutiérrez-Pérez P, Chandel NS, Rutter J, Locasale JW, Landoni JC, Christofk H
Annals of the New York Academy of Sciences,
2021
doi:10.1111/nyas.14678.
Nguyen DD, Saharuka V, Kovalev V, Stuart L, Del Prete M, Lubowiecka K, De Mot R, Venturi V, Alexandrov T
Metabolites,
2021
doi:10.3390/metabo11080477.
Rappez L, Stadler M, Triana S, Gathungu RM, Ovchinnikova K, Phapale P, Heikenwalder M, Alexandrov T
Nature methods,
2021
doi:10.1038/s41592-021-01198-0.
Triana S, Stanifer ML, Metz-Zumaran C, Shahraz M, Mukenhirn M, Kee C, Serger C, Koschny R, Ordonez-Rueda D, Paulsen M, Benes V, Boulant S, Alexandrov T
Molecular Systems Biology ,
2021
doi:10.15252/msb.20209833.
Triana S, Metz-Zumaran C, Ramirez C, Kee C, Doldan P, Shahraz M, Schraivogel D, Gschwind AR, Sharma AK, Steinmetz LM, Herrmann C, Alexandrov T, Boulant S, Stanifer ML
Molecular systems biology,
2021
doi:10.15252/msb.202110232.
La Rocca R, Kune C, Tiquet M, Stuart L, Eppe G, Alexandrov T, De Pauw E, Quinton L
Analytical chemistry,
2021
doi:10.1021/acs.analchem.0c05071.
Phapale P, Palmer A, Gathungu RM, Kale D, Brügger B, Alexandrov T
Journal of proteome research,
2021
doi:10.1021/acs.jproteome.0c00930.
El-Achkar TM, Eadon MT, Menon R, Lake BB, Sigdel TK, Alexandrov T, Parikh S, Zhang G, Dobib D, Dunn KW, Otto EA, Anderton CR, Carson JM, Luo J, Park C, Hamidi H, Zhou J, Hoover P, Schroeder A, Joanes M, Azeloglu EU, Sealfon R, Winfree S, Steck B, He Y, D'Agati VD, Iyengar R, Troyanskaya OG, Barisoni L, Gaut J, Zhang K, Laszik Z, Rovin B, Dagher PC, Sharma K, Sarwal M, Hodgin JB, Alpers CE, Kretzer M, Jain S, The Kidney Precision Medicine Project F
Physiological genomics,
2020
doi:10.1152/physiolgenomics.00104.2020.
Rappez L, Rakhlin A, Rigopoulos A, Nikolenko S, Alexandrov T
Molecular systems biology,
2020
doi:10.15252/msb.20209474.
Nothias LF, Petras D, Schmid R, Dührkop K, Rainer J, Sarvepalli A, Protsyuk I, Ernst M, Tsugawa H, Fleischauer M, Aicheler F, Aksenov AA, Alka O, Allard PM, Barsch A, Cachet X Caraballo-Rodriguez AM, Da Silva RR , Dang T, Garg N, Gauglitz JM, Gurevich A, Isaac G, Jarmusch AK, Kameník Z, Kang KB, Kessler N, Koester I, Korf A, Le Gouellec A, Ludwig M, Martin HC, McCall LI, McSayles J, Meyer SW, Mohimani H, Morsy M, Moyone O, Neumann S, Neuweger H,
Nguyen NH, Nothias-Esposito M, Paolini J, Phelan VV, Pluskal T, Quinn RA, Rogers S, Shrestha B, Tripathi A, van der Hooft JJJ, Vargas F, Weldon KC, Witting M, Yang H, Zhang Z, Zubeil F, Kohlbacher O, Böcker S, Alexandrov T, Bandeira N, Wang M, Dorrestein PC
Nature methods,
2020
doi:10.1038/s41592-020-0933-6.
Lukowski JK, Pamreddy A, Velickovic D, Zhang G, Pasa-Tolic L, Alexandrov T, Sharma K, Anderton CR, Kidney Precision Medicine Project
Journal of the American Society for Mass Spectrometry,
2020
doi:10.1021/jasms.0c00256.
Ong E, Wang LL, Schaub J, O'Toole JF, Steck B, Rosenberg AZ, Dowd F, Hansen J, Barisoni L, Jain S, de Boer IH, Valerius MT, Waikar SS, Park C, Crawford DC, Alexandrov T, Anderton CR, Stoeckert C, Weng C, Diehl AD, Mungall CJ, Haendel M, Robinson PN, Himmelfarb J, Iyengar R, Kretzler M, Mooney S, He Y, Kidney Precision Medicine Project
Nature reviews. Nephrology,
2020
doi:10.1038/s41581-020-00335-w.
Rajewsky N, Almouzni G, Gorski SA, Aerts S, Amit I, Bertero MG, Bock C, Bredenoord AL, Cavalli G, Chiocca S, Clevers H, De Strooper B, Eggert A, Ellenberg J, Fernández XM, Figlerowicz M, Gasser SM, Hubner N, Kjems J, Knoblich JA, Krabbe G, Lichter P, Linnarsson S, Marine JC, Marioni J, Marti-Renom MA, Netea MG, Nickel D, Nollmann M, Novak HR, Parkinson H, Piccolo S, Pinheiro I, Pombo A, Popp C, Reik W, Roman-Roman S, Rosenstiel P, Schultze JL, Stegle O, Tanay A, Testa G, Thanos D, Theis FJ, Torres-Padilla ME, Valencia A, Vallot C, van Oudenaarden A, Vidal M, Voet T
Nature,
2020
doi:10.1038/s41586-020-2715-9.
Phapale P, Rai V, Mohanty AK, Srivastava S
Journal of the American Society for Mass Spectrometry,
2020
doi:10.1021/jasms.0c00224.
Alexandrov T
Annual review of biomedical data science,
2020
doi:10.1146/annurev-biodatasci-011420-031537.
Stanifer ML, Kee C, Cortese M, Zumaran CM, Triana S, Mukenhirn M, Kraeusslich HG, Alexandrov T, Bartenschlager R, Boulant S
Cell reports,
2020
doi:10.1016/j.celrep.2020.107863.
Alexandrov T
Science (New York, N.Y.),
2020
doi:10.1126/science.abb3094.
Ovchinnikova K, Kovalev V, Stuart L, Alexandrov T
BMC bioinformatics,
2020
doi:10.1186/s12859-020-3425-x.
Veličković D, Zhang G, Bezbradica D, Bhattacharjee A, Paša-Tolić L, Sharma K, Alexandrov T, Anderton CR, Anderton CR
Journal of the American Society for Mass Spectrometry,
2020
doi:10.1021/jasms.9b00074.
Zhang G, Zhang J, DeHoog RJ, Pennathur S, Anderton CR, Venkatachalam MA, Alexandrov T, Eberlin LS, Sharma K
Metabolomics : Official journal of the Metabolomic Society,
2020
doi:10.1007/s11306-020-1637-8.
Rose F, Rappez L, Triana SH, Alexandrov T, Genovesio A
2019
doi:10.1002/cyto.a.23955.
Melnik AV, Vázquez-Baeza Y, Aksenov AA, Hyde E, McAvoy AC, Wang M, da Silva RR, Protsyuk I, Wu JV, Bouslimani A, Lim YW, Luzzatto-Knaan T, Comstock W, Quinn RA, Wong R, Ackermann G, Humphrey G, Brouha SS, Spivey T, Lin GY, Bandeira N, Conrad DJ, Rohwer F, Knight R, Alexandrov T, Garg N, Dorrestein PC
mSystems,
2019
doi:10.1128/mSystems.00375-19.
Rusu P, Shao C, Neuerburg A, Acikgöz AA, Wu Y, Zou P, Phapale P, Shankar TS, Döring K, Dettling S, Körkel-Qu H, Bekki G, Costa B, Guo T, Friesen O, Schlotter M, Heikenwalder M, Tschaharganeh DF, Bukau B, Kramer G, Angel P, Herold-Mende C, Radlwimmer B, Liu HK
Cell Stem Cell,
2019
doi:10.1016/j.stem.2019.06.004.
Katja Ovchinnikova, Alexander Rakhlin, Lachlan Stuart, Sergey Nikolenko, Theodore Alexandrov
2019
doi:10.1101/758425.
Katja Ovchinnikova, Vitaly Kovalev, Lachlan Stuart, Theodore Alexandrov
2019
doi:10.1101/518977.
Rappez L, Stadler M, Triana S, Phapale P, Heikenwalder M, Alexandrov T
biorxiv,
2019
doi:10.1101/510222.
Theodore Alexandrov, Katja Ovchnnikova, Andrew Palmer, Vitaly Kovalev, Artem Tarasov, Lachlan Stuart, Renat Nigmetzianov, Dominik Fay, Key METASPACE Contributors
2019
doi:10.1101/539478.
Hauke S, Keutler K, Phapale P, Yushchenko DA, Schultz C
Diabetes,
2018
doi:10.2337/db17-1215.
Nothias LF, Nothias-Esposito M, da Silva R, Wang M, Protsyuk I, Zhang Z, Sarvepalli A, Leyssen P, Touboul D, Costa J, Paolini J, Alexandrov T, Litaudon M, Dorrestein PC
Journal of natural products,
2018
doi:10.1021/acs.jnatprod.7b00737.
Kapono CA, Morton JT, Bouslimani A, Melnik AV, Orlinsky K, Knaan TL, Garg N, Vázquez-Baeza Y, Protsyuk I, Janssen S, Zhu Q, Alexandrov T, Smarr L, Knight R, Dorrestein PC
Scientific reports,
2018
doi:10.1038/s41598-018-21541-4.
Protsyuk I, Melnik AV, Nothias LF, Rappez L, Phapale P, Aksenov AA, Bouslimani A, Ryazanov S, Dorrestein PC, Alexandrov T
Nature protocols,
2018
doi:10.1038/nprot.2017.122.
Palmer A, Phapale P, Fay D, Alexandrov T
Bioinformatics ,
2017
doi:10.1093/bioinformatics/btx786.
Hartmann AC, Petras D, Quinn RA, Protsyuk I, Archer FI, Ransome E, Williams GJ, Bailey BA, Vermeij MJA, Alexandrov T, Dorrestein PC, Rohwer FL
Proceedings of the National Academy of Sciences of the United States of America,
2017
doi:10.1073/pnas.1710248114.
Lotz JM, Hoffmann F, Lotz J, Heldmann S, Trede D, Oetjen J, Becker M, Ernst G, Maas P, Alexandrov T, Guntinas-Lichius O, Thiele H, von Eggeling F
Biochimica et biophysica acta,
2017
doi:10.1016/j.bbapap.2016.08.018.
Luzzatto Knaan T, Garg N, Wang M, Glukhov E, Peng Y, Ackermann G, Amir A, Duggan BM, Ryazanov S, Gerwick L, Knight R, Alexandrov T, Bandeira N, Gerwick WH, Dorrestein PC
eLife,
2017
doi:10.7554/eLife.24214.
Palmer A, Phapale P, Chernyavsky I, Lavigne R, Fay D, Tarasov A, Kovalev V, Fuchser J, Nikolenko S, Pineau C, Becker M, Alexandrov T
Nature methods,
2017
doi:10.1038/nmeth.4072.
Garg N, Zeng Y, Edlund A, Melnik AV, Sanchez LM, Mohimani H, Gurevich A, Miao V, Schiffler S, Lim YW, Luzzatto-Knaan T, Cai S, Rohwer F, Pevzner PA, Cichewicz RH, Alexandrov T, Dorrestein PC
mSystems,
2016
doi:10.1128/msystems.00139-16.
Burns JHR, Alexandrov T, Ovchinnikova K, Gates RD, Takabayashi M
Data in Brief,
2016
doi:10.1016/j.dib.2016.09.009.
Oetjen J, Lachmund D, Palmer A, Alexandrov T, Becker M, Boskamp T, Maass P
Analytical and bioanalytical chemistry,
2016
doi:10.1007/s00216-016-9793-4.