Custom software, plugins and macros written by ALMF and CBA staff

• Center for Bioimage Analyis tools (e.g. MoBIE, BigDataProcessor2, PlateViewer, Elastix Wrapper, CATS, BigDataViewer-Playground)
• Confocal detector sensitivity characterisation using the coefficient of variation (CV), macro for ImageJ
• Detector characterization macro set for ImageJ

Image analysis and visualisation

• FiJi (based on ImageJ) – Open source image analysis software with large user and developer community.
• Cellprofiler – Open source image analysis for large datasets (high-throughput)
• Imaris (Bitplane / Andor): Commercial 4D analysis and visualization tool. We offer several floating licenses.
• Huygens professional (SVI): Commercial deconvolution, stitching and fusion tool. We offer several floating licenses.

Viewer of microscopy companies

• Leica LASAF lite
• Zeiss Zen LE 

FRAP analysis

• FRAPAnalyser (A. Halavatyi, M. Yatskou, E. Friederich, University of Luxembourg)
• EasyFRAP (Koulouras et al 2018, University of Patras, Greece)