If you have questions, problems or projects in image analysis, please contact Image Analysis Support.
Software packages available on our workstations include:
Training for other topics in image analysis and microscope automation can be arranged on demand, please contact image-analysis-support.
We offer basic support in image analysis and statistical data analysis to our external visitors for the screens that they carry out during their visit.
More general and advanced image analysis and statistical data analysis support are provided by the EMBL Center for Bioimage Analysis (CBA) and the EMBL Centre for Statistical Data Analysis, respectively.
For batch-analysis of large amounts of data we support distributed computing on the EMBL computing cluster.
For batch image analysis we currently provide a cluster workflow for CellProfiler for analysing high-throughput microscopy data generated at ALMF.
For statistical analysis and visual browsing of the output generated by high-throughput image analysis results we provide the open source shinyHTM R-package developed by Christian Tischer, Hugo Botelho (University of Lisbon, Portugal) et al.