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EMBL Imaging Centre

Open access to cutting-edge electron and light microscopy

We provide researchers from Europe and beyond with a synergistic portfolio of imaging services including cryo-EM, super-resolution and intravital microscopy to enable new ground-breaking research that crosses the scales of biology.

Cryo-FIB Milling for Lamella Preparation

Aquilos 2

The Aquilos 2 (focused ion beam – scanning electron microscope) from Thermo Fisher Scientific enables the preparation of cellular lamellae from vitreous samples suitable for high-resolution cryo-electron tomography analyses. Plunge frozen as well as high-pressure frozen (HPF) samples can be processed at cryo temperature by standard FIB milling and cryo-lift out approaches, respectively. The lamellae production and lift out process can be guided with fluorescence signal, either performed on a cryo-light microscope prior to the session, or with integrated fluorescence microscope in Aquilos 2. Automated FIB milling routines based on commercial and in-house developed software packages enable unsupervised overnight operations for high-throughput milling.

Important specifications

  • Serial-FIB and AutoTEM software for automated lamella preparation
  • EasyLift NanoManipulator
  • Integrated Fluorescence Light Microscope (iFLM)

Offered workflows

  • Automated over-night lamella preparation on plunge frozen samples.
  • Waffle milling on HPF waffle grids.
  • Serial lift out on HPF waffle or planchette carriers, followed with automated lamellae prepraration.
Lamella through plunge frozen yeast cells imaged with the iFLM inside the Aquilos 2. Credit Zhengyi Yang / EMBL.
Lamella through plunge frozen yeast cells imaged with the iFLM inside the Aquilos 2.
Thermo Fisher Scientific Aquilos 2. Credit: Stuart Ingham/EMBL.
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