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EMBO Practical Course

Metabolite and species dynamics in microbial communities

Overview

Funded by EMBO for excellence in the life sciences.

Course overview

Metabarcoding and metagenomic sequencing unveil the compositional diversity of microbial communities across habitats, from ocean ecosystems to the human gut. While compositional shifts often correlate with environmental or health states, mechanistic insights into dynamic microbiota-environment interactions are often lacking. Integrative approaches can shed light on these mechanisms in native and synthetic communities, such as metabolic cross-feeding driving subpopulation emergence (Varahan et al. eLife 2019, 2020) and long-term community stability (Blasche, Kim et al. Nat Microbiol 2021), or metabolic cues affecting environmental and gut microbiota structure (Clerc et al. Nat Commun 2023, Wuyts et al. Mol Sys Bio 2023, Adreani-Gerard et al. Env. Microbiome 2025, Deng et al. Nature Microbiology 2025, Kuhlish et al. PNAS 2026).

Metabarcoding and metagenomic sequencing unveil the compositional diversity of microbial communities across habitats, from ocean ecosystems to the human gut. While compositional shifts often correlate with environmental or health states, mechanistic insights into dynamic microbiota-environment interactions are often lacking. Integrative approaches can shed light on these mechanisms in native and synthetic communities, such as metabolic cross-feeding driving subpopulation emergence (Varahan et al. eLife 2019, 2020) and long-term community stability (Blasche, Kim et al. Nat Microbiol 2021), or metabolic cues affecting environmental and gut microbiota structure (Clerc et al. Nat Commun 2023, Wuyts et al. Mol Sys Bio 2023, Adreani-Gerard et al. Env. Microbiome 2025, Deng et al. Nature Microbiology 2025, Kuhlish et al. PNAS 2026).

We will introduce the concepts of top-down and bottom-up approaches (e.g., large-scale metagenomic analysis of environmental samples and experimental design to mimic complex interactions in the lab using synthetic communities under controlled conditions), which are relevant to researchers investigating diverse microbial habitats.

Modules

  • Experimental design, culture set-up, and sampling
  • 16S analysis of bacterial communities using Nanopore sequencing technology
  • Metabolite changes during community growth using Metabolomics
  • Interaction mapping plating experiment (optional)
  • Computational analysis introduction using R-studio/Python
  • 16S and metabolomics data analysis (computational)
  • Metabolic modelling of community interactions (computational)

Learning outcomes

The main goal of the course is to equip participants with state-of-the-art concepts in microbial ecosystems and to introduce key tools for gaining mechanistic insights into community dynamics. The central learning objective is for participants to apply these concepts and tools to their own research. Further, we also aim at enabling scientific networking among the participants (including speakers and trainers) and fostering dialogue between scientists from different areas (microbiology, metabolomics, modelling, ecology).

What past participants say about the course

“The course was a great blend of theoretical knowledge and practical applications. It was very dynamic, allowing for engaging discussions and networking opportunities among participants. From trainers to speakers and organisers, everyone was so helpful and approachable, making it easy to ask questions and seek guidance. The diverse facets and perspectives presented created an ideal environment for learning, hands-on exploration, and collaboration.” – Humberto Castillo González, Université de Franche-Comté, France.

Speakers

Speakers, trainers and staff

Renato Alves

EMBL Heidelberg

Germany

Course hub: Heidelberg

Karthik Anantharaman

University of Wisconsin

USA

Course hub: Bangalore

Ashitha Arun

National Centre for Biological Sciences

India

Course hub: Bangalore

Bartosz Jan Bartmanski

Bartosz Jan Bartmanski

EMBL Heidelberg

Germany

Course hub: Heidelberg

Sara Benito Vaquerizo

EMBL Heidelberg

Germany

Course hub: Heidelberg

Sabuj Bhattachary

Institute for Stem Cell Science and Regenerative Medicine

India

Course hub: Bangalore

Matthias Boulanger

EMBL Heidelberg

Germany

Course hub: Heidelberg

Aabha Deshpande

Institute for Stem Cell Science and Regenerative Medicine

India

Course hub: Bangalore

Dragana Despotovic

EMBL Heidelberg

Germany

Course hub: Heidelberg

Narendra Dixit

Indian Institute of Science

India

Course hub: Bangalore

Clémence Frioux

Inria

France

Course hub: Heidelberg

Priscillia Gourvil

CNRS, Roscoff Marine Station

France

Course hub: Bangalore

Matthias Gross

EMBL Heidelberg

Germany

Course hub: Heidelberg

Amrita Hazra

IISER, Pune

India

Course hub: Heidelberg

Nitish Malhotra

University of California, Irvine

USA

Course hub: Bangalore

Kevin Moog

EMBL Heidelberg

Germany

Course hub: Heidelberg

Ganesh Muthu

Institute for Stem Cell Science and Regenerative Medicine

India

Course hub: Bangalore

Mireia Osuna Lopez

EMBL Heidelberg

Germany

Course hub: Heidelberg

Kiran Patil

MRC Toxicology Unit

UK

Course hub: Bangalore

Karthik Raman

Indian Institute of Technology Madras

India

Course hub: Bangalore

Janhavi Sathe

Institute for Stem Cell Science and Regenerative Medicine

India

Course hub: Bangalore

Jessica Sutter

EMBL Heidelberg

Germany

Course hub: Heidelberg

Marla Trindade

University of Western Cape

South Africa

Course hub: Heidelberg

Marine Vallet

Max Planck Institute for Chemical Ecology

Germany

Course hub: Heidelberg

Laura Villacorta

EMBL Heidelberg

Germany

Course hub: Heidelberg

Georg Zeller

Leiden University

The Netherlands

Course hub: Heidelberg

Soraya Zwahlen

EMBL Heidelberg

Germany

Course hub: Heidelberg

Scientific organisers

Sunil Laxman

Institute for Stem Cell Biology

and Regenerative Medicine

India

Course hub: Bangalore

Ian Probert

Sorbonne University

France

Course hub: Bangalore

Flora Vincent

EMBL Heidelberg

Germany

Course hub: Heidelberg

Elisabeth Zielonka

EMBL Heidelberg

Germany

Maria Zimmermann-Kogadeeva

EMBL Heidelberg

Germany

Course hib: Heidelberg

Course organisers

Sophie Dutzi

EMBL Heidelberg

Germany

Course hub: Heidelberg

Michelle Steinhauer

EMBL Heidelberg

Germany

Course hub: Heidelberg

Preliminary programme

Are you on social media? Post using #EMBOMicroCom and don’t forget to tag @EMBLEvents

Day 0 – Monday 21 September 2026
Time
Europe/Berlin
SpeakerTime
India/Bangalore
10:30 – 11:00On-Boarding Day: Welcome and short introduction14:00 – 14:30
11:00 – 11:30Course overview on eCampus /introduction to pre-course work14:30 – 15:00
11:30 – 12:00Software test for pre-course work: followed by speed networking15:00 – 15:30
Day 1 – Sunday 4 October 2026
Time
Europe/Berlin
SpeakerTime
India/Bangalore
Zoom link for the day shared in eCampus
09:45 – 10:30Bangalore Hub:
arrival and light lunch upon arrival followed by registration

Heidelberg Hub:
bus from ISG to EMBL, coffee upon arrival followed by registration

Technical set-up at both hubs
12:45 – 14:00
10:30 – 10:45Welcome and house notes (shared via Zoom) at both sites – joint14:00 – 14:15
10:45 – 11:15Course overview (Introduction to format, expectations, timelines)14:15 – 14:45
11:15 – 12:00Flash Talks by participants14:45 – 15:30
12:00 – 12:15Coffee break15:30 – 15:45
12:15 – 12:45Flash Talks by participants15:45 – 16:15
12:45 – 13:30Lecture: Understanding of microorganisms in their environment for white, green and blue biotechnology exploitation
Marla Trindade – University of the Western Cape, South Africa
16:15 – 17:00
13:30 – 14:30Bangalore Hub:
Practical session 1: Community culture inoculation
Ashita Bala – Institute for Stem Cell Science and Regenerative Medicine, Bangalore, India
Aabha Deshpande – Institute for Stem Cell Science and Regenerative Medicine, Bangalore, India
Priscill
Priscillia Gourvil – CNRS, France
Ian Probert – Sorbonne University, France

Heidelberg Hub:
Lunch break
17:00 – 18:00
14:30 – 15:15Lecture: The impact of phage and metabolic interactions on human host health, environmental ecosystem change, and biogeochemistry
Karthik Anantharaman – University of Wisconsin, USA
18:00 – 18:45
15:15 – 16:15Interactive lecture: Capturing microbial interactions in the wild and in the lab: expeditions, sample collections and experimental design
Ian Probert – Sorbonne University, France
Flora Vincent – EMBL Heidelberg, Germany
18:45 – 19:45
16:15 – 17:15Bangalore Hub:
Dinner

Heidelberg Hub:
Practical session 1: Community culture inoculation
Dragana Despotovic – EMBL Heidelberg, Germany
Matthias Gross – EMBL Heidelberg, Germany
Kevin Moog – EMBL Heidelberg, Germany
19:45 – 21:15
17:15 – 18:15Heidelberg Hub:
Challenges and expectations
Elisabeth Zielonka – EMBL Heidelberg, Germany
Maria Zimmermann – EMBL Heidelberg, Germany
18:15 – 18:30Heidelberg Hub:
Bus from EMBL to ISG Hotel
18:30 – 20:30Heidelberg Hub:
Dinner at ISG Hotel followed by networking
Day 2 – Monday 5 October 2026
Time
Europe/Berlin
SpeakerTime
India/Bangalore
Zoom link for the day shared in eCampus
Bangalore hub:
Overview of the day
Ganesh Muthu – Institute for Stem Cell Science and Regenerative Medicine, India
09:00 – 9:15
Bangalore hub:
Networking: Challenges and Expectations

Aabha Deshpande – Institute for Stem Cell Science and Regenerative Medicine, India
Ganesh Muthu – Institute for Stem Cell Science and Regenerative Medicine, India
09:15 – 10:15
Bangalore hub:
Coffee break
10:15 – 10:45
Bangalore hub:
Practical session 1: Experimental design and culture set-up and sampling

Ashitha Bala – Institute for Stem Cell Science and Regenerative Medicine, India
Aabha Deshpande – Institute for Stem Cell Science and Regenerative Medicine, India
Priscillia Gourvil – CNRS, France
Ganesh Muthu – Institute for Stem Cell Science and Regenerative Medicine, India
10:45 – 12:30
Bangalore hub:
Lunch break
12:30 – 13:45
08:40Heidelberg hub:
Bus from ISG Hotel to EMBL
08:55 – 09:00Heidelberg hub:
Overview of the day

Dragana Despotovic – EMBL Heidelberg, Germany
Kevin Moog – EMBL Heidelberg, Germany
09:00 – 10:15Heidelberg Hub:
Practical session 1 continued: Experimental design and culture set-up

Dragana Despotovic – EMBL Heidelberg, Germany
Kevin Moog – EMBL Heidelberg, Germany
Matthias Gross – EMBL Heidelberg, Germany
10:15 – 11:00Lecture: Predicting structures of microbial communities
Narendra Dixit – Indian Institute of Science, Bangalore, India
13:45 – 14:30
11:00 – 11:30Coffee break14:30 – 15:00
11:30 – 12:15Lecture: Identifying chemical cues exchanged by the hosts and their symbionts with omics tools
Marine Vallet – Max Planck Institute of Science, Bangalore, India
15:00 – 15:45
12:15– 13:15Heidelberg hub:
Lunch break
Bangalore Hub:
Practical session 1 continued: Experimental design and culure set-up and sampling

Ashitha Bala – Institute for Stem Cell Science and Regenerative Medicine, India
Aabha Deshpande – Institute for Stem Cell Science and Regenerative Medicine, India
Priscillia Gourvil – CNRS, France
Ganesh Muthu – Institute for Stem Cell Science and Regenerative Medicine, India
15:45 – 17:45
13:15 – 14:15Heidelberg hub:
Practical session 4: Interaction mapping plating experiment – experimental design and image acquisition
Dragana Despotovic – EMBL Heidelberg, Germany
Matthias Gross – EMBL Heidelberg, Germany
14:15 – 15:00Moderated discussion on responsible conduct of research in computational analysis (whole group discussion followed by breakout groups)
Renato Alves – EMBL Heidelberg, Germany
17:45 – 18:30
15:00 – 16:00Cross-Hub Networking: Heidelberg and Bangalore hubs connected via zoom: group work on responsible conduct of research exercise

Heidelberg:
Renato Alves – EMBL Heidelberg, germany


Bangalore:
Sabuj Bhattacharya – Institute for Stem Cell Science and Regenerative Medicine, Bangalore, India
Nitish Malhorta – University of California, Irvine, USA
Ganesh Muthu – Institute for Stem Cell Science and Regenerative Medicine, Bangalore, India
18:30 – 19:30
Bangalore hub:
Dinner
19:30 – 20:45
16:00 – 16:30Heidelberg hub:
Coffee break
16:30 – 18:00Heidelberg Hub:
Practical session 1 continued: Sampling of community cultures

Dragana Despotovic – EMBL Heidelberg, Germany
Matthias Gross – EMBL Heidelberg, Germany
Kevin Moog – EMBL Heidelberg, Germany
18:00 – 19:15Heidelberg Hub:
Pizza dinner and networking
19:15Heidelberg Hub:
Bus from EMBL to ISG Hotel
Day 3 – Tuesday 6 October 2026
Time
Europe/Berlin
SpeakerTime
India/Banglore
Zoom link for the day shared in eCampus
Bangalore hub:
Overview of the day

Aabha Deshpande – Institute for Stem Cell Science and Regenerative Medicine, India
09:00 – 09:15
Bangalore Hub:
16S analysis of communities using Nanopore sequencing technology
Practical session 2: DNA extraction, normalization, quantifications

Ashitha Bala – Institute for Stem Cell Science and Regenerative Medicine, India
Aabha Deshpande – Institute for Stem Cell Science and Regenerative Medicine, India
Priscillia Gourvil – CNRS, France

With flexible coffee break during session
09:15 – 12:45
08:40Heidelberg hub:
Bus from ISG Hotel to EMBL
08:55 –09:00Heidelberg Hub:
Overview of the day

Dragana Despotovic – EMBL Heidelberg, Germany
Matthias Gross – EMBL Heidelberg, Germany
09:00 – 12:30Heidelberg Hub:
16S analysis of communities using Nanopore sequencing technology
Practical session 2: DNA extraction, normalization, quantifications

Mathias Boulanger – EMBL Heidelberg, Germany
Matthias Gross – EMBL Heidelberg, Germany
Mireia Osuna Lopez – EMBL Heidelberg, Germany
Jessica Sutter – EMBL Heidelberg, Germany
Laura Villacorta – EMBL Heidelberg, Germany
Bangalore hub:
Lunch break
12:45 – 13:45
Bangalore Hub:
Practical sessions 2: 16S analysis

Ashitha Bala – Institute for Stem Cell Science and Regenerative Medicine, India
Aabha Deshpande – Institute for Stem Cell Science and Regenerative Medicine, India
Priscillia Gourvil – CNRS, France

Sequencing facility led by Dr. Awadhesh Pandit

Practical session 3: Metabolomics (LC-MS)
Sunil Laxman – Institute for Stem Cell Science and Regenerative Medicine, Bangalore, India
Ganesh Muthi – Institute for Stem Cell Science and Regenerative Medicine, Bangalore, India
Janhavi Sathe – Institute for Stem Cell Science and Regenerative Medicine, Bangalore, India
13:45 – 15:45
Bangalore hub:
Coffee break
15:45 – 16:00
12:30 – 13:45Heidelberg hub:
Lunch break
Bangalore Hub:
Practical sessions 2 continued: 16S analysis

Ashitha Bala – Institute for Stem Cell Science and Regenerative Medicine, India
Aabha Deshpande – Institute for Stem Cell Science and Regenerative Medicine, India
Priscillia Gourvil – CNRS, France

Sequencing facility led by Dr. Awadhesh Pandit

Practical session 3 continued: Metabolomics (LC-MS)
Sunil Laxman – Institute for Stem Cell Science and Regenerative Medicine, Bangalore, India
Ganesh Muthi – Institute for Stem Cell Science and Regenerative Medicine, Bangalore, India
Janhavi Sathe – Institute for Stem Cell Science and Regenerative Medicine, Bangalore, India
16:00 – 17:30
13:45 – 15:15Heidelberg hub:
Metabolomics (MCF Facility tour, sample extractions)
15:15 – 17:15Heidelberg Hub:
Practical session 2+3 continued: 16S analysis + GeneCore tour (rotating groups)

Mathias Boulanger – EMBL Heidelberg, Germany
Matthias Gross – EMBL Heidelberg, Germany
Mireia Osuna Lopez – EMBL Heidelberg, Germany
Jessica Sutter – EMBL Heidelberg, Germany
Laura Villacorta – EMBL Heidelberg, Germany

Metabolomics (sample acquisition, LC-MS data preprocessing)

Dragana Despotovic – EMBL Heidelberg, Germany
MCF (TBD)
17:15 – 17:30Heidelberg hub:
Coffee break
Bangalore hub:
Free time before dinner
17:30 – 19:00
17:30 – 19:30Heidelberg Hub:
Practical session 2+3 continued: 16S analysis + GeneCore tour (rotating groups)

Mathias Boulanger – EMBL Heidelberg, Germany
Matthias Gross – EMBL Heidelberg, Germany
Mireia Osuna Lopez – EMBL Heidelberg, Germany
Jessica Sutter – EMBL Heidelberg, Germany
Laura Villacorta – EMBL Heidelberg, Germany

Metabolomics (sample extractions, LCMS injection)
Dragana Despotovic – EMBL Heidelberg, Germany
MCF (TBD)
Bangalore hub: dinner followed by networking and drinks19:00 – 20:30
19:00 – 20:30Heidelberg hub: vegetarian dinner followed by networking and drinks
20:30Heidelberg hub: Bus from EMBL to the ISG Hotel
Day 4 – Wednesday 7 October 2026
Time
Europe/Berlin
SpeakerTime
India/Banglore
Zoom link for the day shared in eCampus
Bangalore hub:
Outing including hike
07:00 – 12:00
Bangalore hub:
Lunch break
12:00 – 13:00
09:10Heidelberg hub:
Bus from ISG Hotel to EMBL
09:25 – 09:30Heidelberg hub:
Overview of the day
Maria Zimmermann – EMBL Heidelberg, Germany
09:30 – 10:15Lecture: Metagenomics, metabolic modelling and optimisation methods to investigate microbial community functions
Clémence Frioux – Inria, France
13:00 – 13:45
10:15 – 11:00Lecture: Microbial interations determined by vitamine exchange
Amrtia Hazra – IIS€R, Pune, India
13:45 – 14:30
11:00 – 11:30Cross-Hub Interaction:
Heidelberg and Bangalore Hub connected via Zoom and continued discussions
14:30 – 15:00
11:30 – 12:15Lecture: Investigating structure and ecology of microbial communities with metagenomics taxonomic profiling
Georg Zeller – Leiden University, The Netherlands and EMBL Heidelberg, Germany
15:00 – 15:45
12:15 – 13:30Heidelberg hub:
Lunch break
Bangalore hub:
Coffee break
15:45 – 16:00
Bangalore Hub:
Practical session 4: Interaction mapping plating experiment – experimental design and image acquisition
Ashitha Bala – Institute for Stem Cell Science and Regenerative Medicine, India
Aabha Deshpande – Institute for Stem Cell Science and Regenerative Medicine, India
Ian Probert – Sorbonne University, France
16:00 – 17:00
13:30 – 15:30Computational Practical 5: 16S data analysis
Main trainers:
Sara Benito Vaquerizo – EMBL Heidelberg, Germany
Ganesh Muthu – Institute for Stem Cell Science and Regenerative Medicine, Bangalore, India

Bangalore trainers:
Ashitha Bala – Institute for Stem Cell Science and Regenerative Medicine, Bangalore, India
Aabha Deshpande – Institute for Stem Cell Science and Regenerative Medicine, Bangalore, India
Nitish Malhotra – University of California, Irvine, USA

Heidelberg trainers:
Bartosz Jan Bartmanski – EMBL Heidelberg, Germany
17:00 – 19:00
15:30 – 16:00Heidelberg hub:
Coffee break
Bangalore hub:
Dinner followed by networking
19:00 – 20:30
16:00 – 18:00Heidelberg hub:
Computational Practical 6: Metabolomics data analysis
Sara Benito Vaquerizo – EMBL Heidelberg, Germany
Maria Zimmermann – EMBL Heidelberg, Germany
18:00 – 18:40Heidelberg hub:
bus to downtown Heidelberg via ISG Hotel
18:40 – 19:40Heidelberg hub:
Heidelberg Old Town city tour
20:00 – 22:00Heidelberg hub:
Heidelberg downtown dinner and networking
Day 5 – Thursday 8 October 2026
Time
Europe/Berlin
SpeakerTime
India/Bangalore
Zoom link for the day shared in eCampus
Bangalore hub: Overview of the day
Ganesh Muthu – Institute for Stem Cell Science and Regenerative Medicine, India
08:55 – 09:00
Bangalore Hub:
Computational practical 6: Metabolomics data analysis

Ashitha Bala – Institute for Stem Cell Science and Regenerative Medicine, Bangalore, India
Sunil Laxman – Institute for Stem Cell Science and Regenerative Medicine, Bangalore, India
Nitish Malhotra – University of California, Irvine, USA
Ganesh Muthu – Institute for Stem Cell Science and Regenerative Medicine, Bangalore, India
Janhavi Sathe – Institute for Stem Cell Science and Regenerative Medicine, Bangalore, India
09:00 – 11:00
Bangalore hub: 
Treasure hunt
11:00 – 11:45
Bangalore hub: 
Lunch break
11:45 – 12:45
08:40Heidelberg hub:
Bus from ISG Hotel to EMBL
09:00 – 09:15Heidelberg hub:
Overview of the day

Sara Benito Vaquerizo – EMBL Heidelberg, Germany
09:15 – 10:15Lectures: Young investigators: Field, laboratory and computational approaches to investigate and design metabolic functions of microbial communities
2 x 25 minute talk following by 5 minute discussion
Sara Benito Vaquerizo – EMBL Heidelberg, Germany
Soraya Zwahlen – EMBL Heidelberg, Germany
12:45 – 13:45
10:15 – 11:00Lecture: Modelling microbial community interactions
Kiran Patil – University of Cambridge, UK
13:45 – 14:30
11:00 – 11:30Coffee break14:30 – 15:00
11:30 – 13:00Computational Practical 7: Metabolic modelling of community interactions
Main trainers:
Sara Benito Vaquerizo – EMBL Heidelberg, Germany
Ganesh Muthu – Institute for Stem Cell Science and Regenerative Medicine, Bangalore, India

Bangalore trainers:
Ashitha Bala – Institute for Stem Cell Science and Regenerative Medicine, Bangalore, India
Aabha Deshpande – Institute for Stem Cell Science and Regenerative Medicine, Bangalore, India
Nitish Malhotra – University of California, Irvine, USA

Heidelberg trainers:
Bartosz Jan Bartmanski – EMBL Heidelberg, Germany
15:00 – 16:30
13:00 – 14:00Heidelberg hub:
Lunch break
Bangalore coffee break16:30 – 16:45
Bangalore hub:
Practical session 4: Interaction mapping plating experiment – image analysis

Ashitha Bala – Institute for Stem Cell Science and Regenerative Medicine, Bangalore, India
Aabha Deshpande – Institute for Stem Cell Science and Regenerative Medicine, Bangalore, India
Priscillia Gouvril – CNRS, Roscoss Marine Station, France
Nitish Malhotra – University of California, Irvine, USA
Ganesh Muthu – Institute for Stem Cell Science and Regenerative Medicine, Bangalore, India
16:45 – 17:30
14:00 – 15:45Computational Practical 7 continued: Metabolic modelling of community interactions
Main trainers:
Sara Benito Vaquerizo – EMBL Heidelberg, Germany
Ganesh Muthu – Institute for Stem Cell Science and Regenerative Medicine, Bangalore, India

Bangalore trainers:
Ashitha Bala – Institute for Stem Cell Science and Regenerative Medicine, Bangalore, India
Aabha Deshpande – Institute for Stem Cell Science and Regenerative Medicine, Bangalore, India
Nitish Malhotra – University of California, Irvine, USA

Heidelberg trainers:
Bartosz Jan Bartmanski – EMBL Heidelberg, Germany
17:30 – 19:15
15:45 – 16:15Coffee break and continue discussion and exercise on responsible conduct of research19:15 – 19:45
16:15 – 17:00Heidelberg hub:
Practical session 4: Interaction mapping plating experiment: Image analysis

Sara Benito – EMBL Heidelberg, Germany
Matthias Gross – EMBL Heidelberg, Germany
17:00 – 18:00Heidelberg hub:
EMBL campus treasure hunt
Bangalore hub:
Dinner followed by networking
19:45 – 21:15
18:00 – 19:30Heidelberg hub:
Tapas dinner followed by networking
19:30Heidelberg hub:
Bus from EMBL to the ISG Hotel
Day 6 – Friday 9 October 2026
Time
Europe/Berlin
SpeakerTime
India/Bangalore
Zoom link for the day shared in eCampus
Bangalore hub: 
Core facility tours
09:00 – 10:15
Bangalore hub:
Coffee break
10:15 – 10:30
Bangalore hub:
Practical presentation preparation time
10:30 – 11:30
07:50Heidelberg hub:
Bus from ISG Hotel to EMBL
08:00 – 09:00Cross site – preparation time in teams for practical presentations11:30 – 12:30
Bangalore hub:
Lunch break
12:30 – 13:30
09:00 – 10:00Heidelberg hub:
Group work continued
10:00 – 11:45Cross site team presentations

10 minute presentation + 10 minute discussion per team
13:30 – 15:15
11:45 – 12:45Bangalore hub:
coffee break

Heidelberg hub:

Lunch break

Opportunity to network on specific topics
15:15 – 16:15
12:45 – 13:30Lecture: Learning and predicting novel metabolic pathways and interactions
Karthik Raman – Indian Institute of Technology, Madras, Chennai, India
16:15 – 17:00
13:30 – 14:15Discussion round on responsible conduct of research
All trainers and organisers,
Renato Alves – EMBL Heidelberg
Sabuj Bhattacharya – Institute for Stem Cell Science and Regenerative Medicine, Bangalore, India
17:00 – 17:45
14:15 – 14:45Joint summary (take home messages, principles of responsible conduct of research) and closing remarks, treasure hunt challenge results17:45 – 18:15
Bangalore hub:
Course dinner
18:15 – 19:45
14:45Heidelberg hub: 
Bus from EMBL to downtown Heidelberg for free time in the city

Practical information

Registration fees

The course is limited to 20 participants. For selection purposes, please note that your application will not be considered without a letter of motivation.

Registration fees

Your registration for the event includes:

  • Admission to the event
  • Meals and coffee breaks
  • Course materials
  • Access to the e-learning platform
  • A letter to support your visa application (for more information, check the ‘Travel and accommodation’ tab)

For this EMBO course, the fees include accommodation and transportation to and from the ISG Hotel to the venue

EMBL Heidelberg
site (Germany)
Bangalore Life Science
Cluster campus site (India)
Academia€500€150
PhD Student€500€150
Industry€1100€250

Confirmation and payment

The registration fee should be paid only after acceptance to the course. The results will be announced approximately 2-3 weeks after the application deadline.

Cancellation policy

If you are no longer able to take part in the course, please inform your course contact responsible for this event. Your registration and the submitted motivation letter will be deleted.

Please also check our Terms and Conditions for the cancellation policy.

Motivation letter submission and selection

After you have logged in and successfully registered, you will receive an email asking you to submit your motivation letter. Click on the link provided and enter your motivation letter in the text box provided. Alternatively you can submit your motivation letter by clicking on the link on the confirmation page directly after registering.

Instructions

  1. Include your relevant skills, experience and qualifications showing why you would be suitable for the course.
  2. Explain why you would like to attend, including what you can contribute and how you think you will benefit from the course.

Please note:

  • The limit of 2,000 characters refers to manually typed text and excludes spaces. If an error occurs try using a different web browser (preferably Google Chrome or Mozilla Firefox).
  • If you copy-paste the text into the form, hidden formatting might still be included which may cause the text to exceed the 2,000 character limit resulting in an error message. We recommend you clear all formatting before pasting in the text.
  • If you have special symbols in your text, make sure you are using Unicode characters, otherwise these will not be recognised.

For detailed instructions, please watch our video on how to submit a course motivation letter.

Please note it is not possible to apply after the motivation letter deadline!

Selection

The selection results will be announced by email to all applicants. We aim to announce 3 weeks (21 days) after the motivation letter submission deadline but delays may occur.

Further details

For further information about registration and motivation letter submission please refer to the FAQ page.

Financial assistance

Financial assistance

Limited financial assistance is provided by the EMBL Advanced Training Centre Corporate Partnership Programme and EMBO in the form of travel grants, childcare grants, and accessibility grants.

Your place in the meeting is only confirmed by paying the registration fee, which is mandatory even when receiving a fee waiver.

Travel grant

The travel grant will cover the cost of travel (airfare, train, bus, taxi, and visa) and/or registration fees and is provided up to specified caps which are normally as follows:

  • up to €500 for any participant travelling to an EMBO Practical Course.
  • up to €1000 for any participant working in Chile, India, Singapore, or Taiwan travelling to an EMBO Practical Course.

The organisers may reduce the grant cap to accommodate more participants. Recipients will be notified of their travel cap amount when they are informed of the outcome of their application. Original receipts must be provided with your signature for all costs incurred within two months of completion of travel. Scanned copies cannot be accepted.

Childcare grants

There is the possibility to apply for a childcare grant to offset child care costs incurred by participants, speakers, trainers, and organisers when attending a course. Eligible costs include (but are not limited to) fees for a babysitter, child-care facility, or travel costs for a caregiver. Please note that priority will be given to early-stage researchers. There is a limited amount of funding available for the childcare grants and funds will be distributed amongst eligible applicants.

Boehringer Ingelheim Fonds travel grant

Applies to selected courses only. Availability will be indicated during the abstract or motivation letter submission process.

This grant covers costs related to your attendance to the course (registration, travel, and accommodation costs). The grant is restricted to PhD students and postdocs who conduct basic biomedical research.
Whether you are eligible to apply for a travel grant, depends on when you received your university entrance qualification (e.g. Abitur, A-Levels, High School Diploma, Final State Examination):

  • for PhD and MD students, as well as graduates, the university entrance qualification must not have been obtained more than 11 years ago at the time of the envisaged course
  • for postdocs, the university entrance qualification must not have been obtained more than 13 years ago at the time of the envisaged course

EMBO accessibility grant

For EMBO Practical Course participants with accessibility needs, there is the possibility to apply for an accessibility grant to offset costs incurred by participants or speakers when participating at a course. Eligible costs include costs incurred for equipment or adaptations to the course environment, or travel costs for an event companion to assist the participant or speaker during the course where necessary. While we do our best to accommodate needs, please note that extensive changes to the course environment might not be possible. Priority will be given to early-stage researchers.

A maximum amount of €500 can be awarded per participant applying for an EMBO accessibility grant. In order to apply for this grant for EMBO Practical Courses, you must be registered by the application deadline. 

Application

Whether you are attending onsite or virtually, to apply for financial assistance, please follow the steps in the application system. During the process of submitting your motivation letter to the system, you will be asked which type of grant you want to apply for.

Applications for financial support will not influence the outcome of the selection results.

Results

Grant allocations are announced by email to all applicants after the selection results.

Selection for financial assistance is based on scientific merit, your current work or study location, the reasons for needing financial support, and the impact this event will have on your career.

Please note that for childcare grants, priority will be given to early-stage researchers.

Further details

Check out this list of external funding opportunities

For further information about financial assistance please refer to the FAQ page.

Travel and accommodation

Visa

We can send you a registration confirmation to support your visa procedure (not an official invitation letter). Please contact the Conference Officer responsible for your event. Read our FAQ for more information.

Travel

If you are travelling to Heidelberg via aeroplane, train, car, or long-distance bus, you can find useful information on our travel information page.

Accommodation

EMBL Heidelberg site participants
Accommodation for participants attending the course at EMBL Heidelberg has been pre-booked for you at the ISG Hotel for the default dates of 03 October to 9 October (6 nights). Please note that the course registration fee includes coverage of accommodation costs in twin rooms, including breakfasts, for your stay at the ISG but that you will be required to pay an additional cost of 24 EUR per night for a single room. This should be paid by you directly to the ISG during your stay. Any additional nights need to be booked and paid for by you. We recommend that all course participants for the EMBL Heidelberg site stay at the ISG Hotel which is the dedicated hotel for the course.

Bangalore Life Science Cluster site participants

Accommodation for participants attending the course in Bangalore will be on site, located at the venue of the course from 03 to 10th October. The course registration fee will include accommodation in twin rooms, and breakfast, lunch and dinner, starting with a light lunch on the 3rd and ending with dinner on 9th October. Additional nights can only be provided under exceptional circumstances. We recommend that all course participants stay at the campus hotel which is the dedicated hotel for the course.

Local transportation

EMBL Heidelberg site participants
Shuttle buses will go from the ISG Hotel to EMBL and back, mornings and evenings. A bus schedule and location of the bus stops will be made available prior to the meeting.

Bangalore Life Science Cluster site participants
The accommodation is on campus, within walking distance of the laboratory space where the course will be conducted. The campus is well connected to/from the Bangalore International airport, train stations or bus stations, and can easily be reached using any pre-paid or post-paid taxi options.”

Further details

EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany

BRIC inStem, GKVK Post, Bellary Road, Bangalore 560065. Web: https://instem.res.in/

For further information on getting to EMBL Heidelberg visit our Travel Information page.

Further information on getting to Bangalore Life Science Cluster Campus will be provided to selected course participants.

For EMBL Heidelberg only: for enquiries about accommodation and local transportation please refer to the FAQ page.

On-site information

The below information applies to the EMBL Heidelberg hub. Information about on-site facilities at BLiSC will be shared with participants upon arrival

Catering

All meals and coffee breaks are included in the registration fee. Our catering staff will prepare a variety of vegetarian meals, meat and fish dishes, soups, pasta, fresh fruit and vegetables, as well as a variety of desserts.

Please wear your badge at all times when serving yourself.

No food or drinks are allowed in the computer training lab or wet labs.

Internet

Wi-Fi is available on campus using the EMBL-Events network and the event specific password, which will be provided on site. The eduroam network (secure, worldwide roaming access service developed for the international research and education community) is also available.

Photography

During the conference, an EMBL Photographer may be taking photos. If you would not like to appear in these, please inform the photographer or a member of the Course and Conference Office.

Charging stations

There are lockers available next to the stairs leading down into the Auditorium. You will find some of those equipped with sockets to charge your smartphone/tablet etc.

In most places the electricity is 220 volts AC (50 cycles). An adaptor and a plug that fits the German socket may be needed for your appliances/laptop (i.e. American, Japanese, etc.). A USB charging station for electronic devices is available at the registration desk.

Printing

We can help to print your boarding pass/train ticket. Please send it to events@embl.de and collect your print-outs at the registration desk.

Luggage

There are lockers available on-site to store your luggage, which require a 2 EURO coin to operate. There is another luggage room on level E0, which is free to use but remains unlocked during the course.

Lost and found

‘’Lost and Found’’ items are kept at the registration desk until the end of the course.

Nursing room

There is a nursing room available in the ATC Rooftop Lounge on level A29.

Room for prayers, meditation, and yoga

There is a room for prayer, yoga, and meditation, located on level E0 behind the Auditorium. Please be respectful of others using the room.

EMBL campus map

Health and safety notes

Please take a moment to read our health and safety policy.

  • Do not smoke in any EMBL building.
  • Eating and drinking is prohibited in the Auditorium and all laboratories.
  • Do not enter any restricted areas or the laboratories unless instructed to do so.

If first aid is required

  • The first aid room is located next to the ATC Registration Desk (room 10- 205).
  • Dial the Emergency number 222 from any EMBL internal phone only.
  • Be prepared to answer the following questions: Where is the accident? What happened? How many injured?
  • Emergency number 06221-387 7821 from mobile phones.
  • Please report all accidents to the conference officer at the registration desk.

In case of fire

  • Press the nearest fire alarm button or the Emergency number 222 from any internal phone.
  • A loud fire alarm will go off if an evacuation is required. On hearing the alarm leave the building immediately following the escape route and fire wardens and head to one of the meeting points
  • Do not use the lifts.

Beyond first aid

The Heidelberg University Hospital or ‘Universitätsklinikum‘ has a 24 hour accident and emergency facility and is at ‘Im Neuenheimer Feld 672’. It is a 8km or a 20 minute taxi ride away from EMBL. In a medical emergency, the ambulance service generally transports patients to this hospital.

Please remember to bring your own medication, if needed, to the conference. Note that the next pharmacy is a 4-minute drive from the EMBL, but for many medications you will be required to see a doctor to get a prescription.

Ensure in advance that your medical insurance will cover you during your visit in the event that you do need to see a doctor while in Heidelberg.

The EMBL course and conference office team are able to advise you on where to turn for emergency or non-emergency medical treatment in Heidelberg and can assist you in making appointments and / or arranging transport to get to the pharmacy or a doctor of your choice if necessary. Please note, we are not however permitted to personally accompany you off-campus.

Sightseeing

A variety of activities in Heidelberg can be found on the website of Heidelberg Marketing.

Technical requirements and event software

(delete if no technical requirements for this course!)

Event software

The EMBL eCampus learning platform will be used to collaborate, communicate and network with all of the course participants. All participants will receive information on how to join shortly before the course. We recommend using Chrome, Safari or Mozilla Firefox browsers for eCampus. 

Zoom will be used for the live talks and Q&A sessions. More information will be provided closer to the start of the course.

Other information

While using the software during the course, please make sure you have nothing else using your bandwidth. We recommend using a wired connection.

Additional information

Please find additional information including FAQs and terms and conditions on our Information for Participants page.

Sponsors

Sponsorship opportunities

We offer a variety of event sponsoring possibilities, with the flexibility to select a set sponsorship package or combine individual sponsorship options to suit your event budget. Discounts are available for companies sponsoring multiple events at EMBL Heidelberg. View other conferences, or contact sponsorship@embl.org. for further information.

If you are interested in becoming a media partner of this event, please visit our media partnerships webpage.

Warning

EMBL advises sponsors to beware of fraudulent schemes falsely offering sponsorship opportunities. All legitimate communication about sponsorship for EMBL conferences, symposia, and courses comes directly from EMBL via official EMBL email accounts. EMBL does not use third parties for sponsorship acquisition.

– EMBL does not sell attendee lists.
– EMBL will never ask for credit card details or direct payments.
– All payments are processed by invoice only.

If you receive a suspicious message claiming to be from or on behalf of EMBL, please report it to sponsorship@embl.org.

Media kit

Want to let others know you’re attending this event? Take a look at our shareable media and feel free to use them in your social media channels or presentations.

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Date: 4 - 9 Oct 2026

Location: EMBL Heidelberg and Bangalore

Venue: EMBL Advanced Training Centre and BRIC inStem, Bangalore (a part of the Bangalore Life Science Cluster)


Deadline(s):

Application: 5 Jul 2026


Organisers:

  • Sunil Laxman
    Institute for Stem Cell Biology and Regenerative Medicine, India
    • Ian Probert
      Station Biologique de Roscoff, France

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