Amorphous calcium phosphate is a major component of the forming fin bones of zebrafish: Indications for an amorphous precursor phase

Mahamid J, Sharir A, Addadi L, Weiner S

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008

doi:10.1073/pnas.0803354105.

Cryo-electron tomography of reconstituted biomolecular condensates.

Tollervey F, Zhang X, Bose M, Sachweh J, Woodruff JB, Franzmann TM, Mahamid J

Methods in molecular biology (Clifton, N.J.), 2022

doi:10.1007/978-1-0716-2663-4_15.

Centrosomes. Regulated assembly of a supramolecular centrosome scaffold in vitro.

Woodruff JB, Wueseke O, Viscardi V, Mahamid J, Ochoa SD, Bunkenborg J, Widlund PO, Pozniakovsky A, Zanin E, Bahmanyar S, Zinke A, Hong SH, Decker M, Baumeister W, Andersen JS, Oegema K, Hyman AA

Science (New York, N.Y.), 2015

doi:10.1126/science.aaa3923.

Nuclear pores dilate and constrict in cellulo.

Zimmerli CE, Allegretti M, Rantos V, Goetz SK, Obarska-Kosinska A, Zagoriy I, Halavatyi A, Hummer G, Mahamid J, Kosinski J, Beck M

Science (New York, N.Y.), 2021

doi:10.1126/science.abd9776.

Visualizing molecular architectures of cellular condensates: hints of complex coacervation scenarios.

Goetz SK, Mahamid J

Developmental cell, 2020

doi:10.1016/j.devcel.2020.09.003.

EasyGrid: a versatile platform for automated cryo-EM sample preparation and quality control.

Gemin O, Armijo V, Hons M, Bissardon C, Linares R, Bowler MW, Wolff G, Kovalev K, Babenko A, Salo VT, Schneider S, Rossi C, Lecomte L, Deckers T, Lauzier K, Janocha R, Felisaz F, Sinoir J, Galej W, Mahamid J, Müller CW, Eustermann S, Mattei S, Cipriani F, Papp G

bioRxiv, 2024

doi:10.1101/2024.01.18.576170.

Amorphous calcium phosphate is a major component of the forming fin bones of zebrafish: Indications for an amorphous precursor phase

Mahamid J, Sharir A, Addadi L, Weiner S

Proceedings of the National Academy of Sciences of the United States of America, 2008

doi:10.1073/pnas.0803354105.

Mapping amorphous calcium phosphate transformation into crystalline mineral from the cell to the bone in zebrafish fin rays

Mahamid J, Aichmayer B, Shimoni E, Ziblat R, Li CH, Siegel S, Paris O, Fratzl P, Weiner S, Addadi L

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2010

doi:10.1073/pnas.0914218107.

Regulated assembly of a supramolecular centrosome scaffold in vitro

Woodruff JB, Wueseke O, Viscardi V, Mahamid J, Ochoa SD, Bunkenborg J, Widlund PO, Pozniakovsky A, Zanin E, Bahmanyar S, Zinke A, Hong SH, Decker M, Baumeister W, Andersen JS, Oegema K, Hyman AA

SCIENCE, 2015

doi:10.1126/science.aaa3923.

A modular platform for automated cryo-FIB workflows.

Klumpe S, Fung HKH, Goetz SK, Zagoriy I, Hampoelz B, Zhang X, Erdmann PS, Baumbach J, Müller CW, Beck M, Plitzko JM, Mahamid J

eLife, 2021

doi:10.7554/eLife.70506.

Multi-particle cryo-EM refinement with M visualizes ribosome-antibiotic complex at 3.5 Å in cells.

Tegunov D, Xue L, Dienemann C, Cramer P, Mahamid J

Nature methods, 2021

doi:10.1038/s41592-020-01054-7.

Site-Specific Cryo-focused Ion Beam Sample Preparation Guided by 3D Correlative Microscopy.

Arnold J, Mahamid J, Lucic V, de Marco A, Fernandez JJ, Laugks T, Mayer T, Hyman AA, Baumeister W, Plitzko JM

Biophysical journal, 2016

doi:10.1016/j.bpj.2015.10.053.

Tailoring cryo-electron microscopy grids by photo-micropatterning for in-cell structural studies.

Toro-Nahuelpan M, Zagoriy I, Senger F, Blanchoin L, Thery M, Mahamid J

2019

doi:10.1101/676189.

Addressing the challenge of in situ structural studies of RNP granules in light of emerging opportunities.

Zhang X, Mahamid J

Current opinion in structural biology, 2020

doi:10.1016/j.sbi.2020.06.012.

Light and electron microscopy continuum-resolution imaging of 3D cell cultures.

D'Imprima E, Garcia Montero M, Gawrzak S, Ronchi P, Zagoriy I, Schwab Y, Jechlinger M, Mahamid J

Developmental cell, 2023

doi:10.1016/j.devcel.2023.03.001.

Cryo-ET suggests tubulin chaperones form a subset of microtubule lumenal particles with a role in maintaining neuronal microtubules.

Chakraborty S, Martinez-Sanchez A, Beck F, Toro-Nahuelpan M, Hwang IY, Noh KM, Baumeister W, Mahamid J

Proceedings of the National Academy of Sciences of the United States of America, 2025

doi:10.1073/pnas.2404017121.

Bone mineralization proceeds through intracellular calcium phosphate loaded vesicles: a cryo-electron microscopy study.

Mahamid J, Sharir A, Gur D, Zelzer E, Addadi L, Weiner S

Journal of structural biology, 2011

doi:10.1016/j.jsb.2011.03.014.

A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation

Patel A, Lee HO, Jawerth L, Maharana S, Jahnel M, Hein MY, Stoynov S, Mahamid J, Saha S, Franzmann TM, Pozniakovski A, Poser I, Maghelli N, Royer LA, Weigert M, Myers EW, Grill S, Drechsel D, Hyman AA, Alberti S

CELL, 2015

doi:10.1016/j.cell.2015.07.047.

Multi-particle cryo-EM refinement with M visualizes ribosome-antibiotic complex at 3.5 Å in cells.

Tegunov D, Xue L, Dienemann C, Cramer P, Mahamid J

Nature methods, 2021

doi:10.1038/s41592-020-01054-7.

Molecular mechanisms of stress-induced reactivation in mumps virus condensates.

Zhang X, Sridharan S, Zagoriy I, Eugster Oegema C, Ching C, Pflaesterer T, Fung HKH, Becher I, Poser I, Müller CW, Hyman AA, Savitski MM, Mahamid J

Cell, 2023

doi:10.1016/j.cell.2023.03.015.

Unravelling molecular complexity in structural cell biology.

Pfeffer S, Mahamid J

Current opinion in structural biology, 2018

doi:10.1016/j.sbi.2018.08.009.

Effects of base temperature, immersion medium, and EM grid material on devitrification thresholds in cryogenic optical super-resolution microscopy.

Mojiri S, Dobbs JM, Faul N, Burg TP, Mahamid J, Ries J

bioRxiv, 2025

doi:10.1101/2025.03.28.645948.

Transport-limited growth of coccolith crystals.

Avrahami EM, Eyal Z, Varsano N, Zagoriy I, Mahamid J, Gal A

Advanced materials (Deerfield Beach, Fla.), 2023

doi:10.1002/adma.202309547.

In-cell architecture of the nuclear pore and snapshots of its turnover.

Allegretti M, Zimmerli CE, Rantos V, Wilfling F, Ronchi P, Fung HKH, Lee CW, Hagen W, Turoňová B, Karius K, Börmel M, Zhang X, Müller CW, Schwab Y, Mahamid J, Pfander B, Kosinski J, Beck M

Nature, 2020

doi:10.1038/s41586-020-2670-5.

Protocol for subtomogram averaging of helical filaments in cryo-electron tomography.

Zhang X, Mahamid J

STAR protocols, 2024

doi:10.1016/j.xpro.2024.103272.

Effects of base temperature, immersion medium, and EM grid material on devitrification thresholds in cryogenic optical super-resolution microscopy.

Mojiri S, Dobbs JM, Faul N, Burg TP, Mahamid J, Ries J

Journal of structural biology, 2025

doi:10.1016/j.jsb.2025.108231.

Polysome collapse and RNA condensation fluidize the cytoplasm.

Xie Y, Shu T, Liu T, Spindler MC, Mahamid J, Hocky GM, Gresham D, Holt LJ

Molecular cell, 2024

doi:10.1016/j.molcel.2024.06.024.

Cryo-focused Ion Beam Sample Preparation for Imaging Vitreous Cells by Cryo-electron Tomography.

Schaffer M, Engel BD, Laugks T, Mahamid J, Plitzko JM, Baumeister W

Bio-protocol, 2015

doi:10.21769/BioProtoc.1575.

Zooming into lipid droplet biology through the lens of electron microscopy.

Dudka W, Salo VT, Mahamid J

FEBS letters, 2024

doi:10.1002/1873-3468.14899.

Initial stages of calcium uptake and mineral deposition in sea urchin embryos

Vidavsky N, Addadi S, Mahamid J, Shimoni E, Ben-Ezra D, Shpigel M, Weiner S, Addadi L

Proceedings of the National Academy of Sciences of the United States of America, 2014

doi:10.1073/pnas.1312833110.

Intracellular nanoscale architecture as a master regulator of calcium carbonate crystallization in marine microalgae.

Kadan Y, Tollervey F, Varsano N, Mahamid J, Gal A

Proceedings of the National Academy of Sciences of the United States of America, 2021

doi:10.1073/pnas.2025670118.

Polar Positioning of Phase-Separated Liquid Compartments in Cells Regulated by an mRNA Competition Mechanism

Saha S, Weber CA, Nousch M, Adame-Arana O, Hoege C, Hein MY, Osborne-Nishimura E, Mahamid J, Jahnel M, Jawerth L, Pozniakovski A, Eckmann CR, Jülicher F, Hyman AA

Cell, 2016

doi:10.1016/j.cell.2016.08.006.

Site-Specific Cryo-focused Ion Beam Sample Preparation Guided by 3D Correlative Microscopy

Arnold J, Mahamid J, Lucic V, de Marco A, Fernandez JJ, Laugks T, Mayer T, Hyman AA, Baumeister W, Plitzko JM

Biophysical journal, 2016

doi:10.1016/j.bpj.2015.10.053.

Optimized cryo-focused ion beam sample preparation aimed at in situ structural studies of membrane proteins

Schaffer M, Mahamid J, Engel BD, Laugks T, Baumeister W, Plitzko JM

Journal of structural biology, 2017

doi:10.1016/j.jsb.2016.07.010.

Native molecular architectures of centrosomes in C. elegans embryos.

Tollervey F, Rios MU, Zagoriy E, Woodruff JB, Mahamid J

bioRxiv, 2024

doi:10.1101/2024.04.03.587742.

High-throughput cryo-ET structural pattern mining by unsupervised deep iterative subtomogram clustering.

Zeng X, Kahng A, Xue L, Mahamid J, Chang YW, Xu M

Proceedings of the National Academy of Sciences of the United States of America, 2023

doi:10.1073/pnas.2213149120.

In-cell architecture of an actively transcribing-translating expressome.

O'Reilly FJ, Xue L, Graziadei A, Sinn L, Lenz S, Tegunov D, Blötz C, Singh N, Hagen WJH, Cramer P, Stülke J, Mahamid J, Rappsilber J

Science (New York, N.Y.), 2020

doi:10.1126/science.abb3758.

Mapping amorphous calcium phosphate transformation into crystalline mineral from the cell to the bone in zebrafish fin rays

Mahamid J, Aichmayer B, Shimoni E, Ziblat R, Li C, Siegel S, Paris O, Fratzl P, Weiner S, Addadi L

Proceedings of the National Academy of Sciences of the United States of America, 2010

doi:10.1073/pnas.0914218107.

Publisher Correction: visualizing translation dynamics at atomic detail inside a bacterial cell.

Xue L, Lenz S, Zimmermann-Kogadeeva M, Tegunov D, Cramer P, Bork P, Rappsilber J, Mahamid J

Nature, 2022

doi:10.1038/s41586-022-05455-w.

An architectural role of specific RNA-RNA interactions in oskar granules.

Bose M, Rankovic B, Mahamid J, Ephrussi A

Nature cell biology, 2024

doi:10.1038/s41556-024-01519-3.

Molecular architectures of centrosomes in C. elegans embryos visualized by cryo-electron tomography.

Tollervey F, Rios MU, Zagoriy E, Woodruff JB, Mahamid J

Developmental cell, 2025

doi:10.1016/j.devcel.2024.12.002.

Liquid-crystalline phase transitions in lipid droplets are related to cellular states and specific organelle association.

Mahamid J, Tegunov D, Maiser A, Arnold J, Leonhardt H, Plitzko JM, Baumeister W

Proceedings of the National Academy of Sciences of the United States of America, 2019

doi:10.1073/pnas.1903642116.

Phase separation of a yeast prion protein promotes cellular fitness

Franzmann T, Jahnel M, Pozniakovsky A, Mahamid J, Holehouse AS, Nüske E, Richter D, Baumeister W, Grill SW, Pappu RV, Hyman AA, Alberti S

2018

doi:10.1126/science.aao5654.

The distance between the plasma membrane and the actomyosin cortex acts as a nanogate to control cell surface mechanics.

Lembo S, Strauss L, Cheng D, Vermeil J, Siggel M, Toro-Nahuelpan M, Chan CJ, Kosinski J, Piel M, Roure OD, Heuvingh J, Mahamid J, Diz-Muñoz A

bioRxiv, 2023

doi:10.1101/2023.01.31.526409.

Author Correction: stress fibres are embedded in a contractile cortical network.

Vignaud T, Copos C, Leterrier C, Toro-Nahuelpan M, Tseng Q, Mahamid J, Blanchoin L, Mogilner A, Théry M, Kurzawa L

Nature materials, 2020

doi:10.1038/s41563-020-00874-4.

Challenges of Integrating Stochastic Dynamics and Cryo-Electron Tomograms in Whole-Cell Simulations.

Earnest TM, Watanabe R, Stone JE, Mahamid J, Baumeister W, Villa E, Luthey-Schulten Z

The journal of physical chemistry. B, 2017

doi:10.1021/acs.jpcb.7b00672.

Genetically encoded multimeric tags for subcellular protein localization in cryo-EM.

Fung HKH, Hayashi Y, Salo VT, Babenko A, Zagoriy I, Brunner A, Ellenberg J, Müller CW, Cuylen-Haering S, Mahamid J

Nature methods, 2023

doi:10.1038/s41592-023-02053-0.

Cryo-EM structure of the native rhodopsin dimer in nanodiscs.

Zhao DY, Poege M, Morizumi T, Gulati S, Van Eps N, Zhang J, Miszta P, Filipek S, Mahamid J, Plitzko JM, Baumeister W, Ernst OP, Palczewski K

The Journal of biological chemistry, 2019

doi:10.1074/jbc.RA119.010089.

The centrosome is a selective phase that nucleates microtubules by concentrating tubulin

Woodruff JB, Ferreira Gomes B, Widlund PO, Mahamid J, Honigmann A and Hyman AA.

2017

doi:10.1016/j.cell.2017.05.028.

Self-Sharpening Mechanism of the Sea Urchin Tooth

Killian CE, Metzler RA, Gong YT, Churchill TH, Olson IC, Trubetskoy V, Christensen MB, Fournelle JH, De Carlo F, Cohen S, Mahamid J, Scholl A, Young A, Doran A, Wilt FH, Coppersmith SN, Gilbert PUPA

ADVANCED FUNCTIONAL MATERIALS, 2011

doi:10.1002/adfm.201001546.

Overview of the amorphous precursor phase strategy in biomineralization

Weiner S, Mahamid J, Politi Y, Ma Y, Addadi L

Frontiers of Materials Science in China, 2009

doi:10.1007/s11706-009-0036-x.

Visualizing translation dynamics at atomic detail inside a bacterial cell.

Xue L, Lenz S, Zimmermann-Kogadeeva M, Tegunov D, Cramer P, Bork P, Rappsilber J, Mahamid J

Nature, 2022

doi:10.1038/s41586-022-05255-2.

Structural insights into context-dependent inhibitory mechanisms of chloramphenicol in cells.

Xue L, Spahn CMT, Schacherl M, Mahamid J

Nature structural & molecular biology, 2025

doi:10.1038/s41594-024-01441-0.

Cryo-Electron Tomography: The realization of a vision.

Mahamid J, Baumeister W

Microscopy and Analysis (Americas), 2012

doi:.

Visualizing the molecular sociology at the HeLa cell nuclear periphery

Mahamid J, Pfeffer S, Schaffer M, Villa E, Danev R, Cuellar LK, Förster F, Hyman AA, Plitzko JM, Baumeister W

Science (New York, N.Y.), 2016

doi:10.1126/science.aad8857.

Initial stages of calcium uptake and mineral deposition in sea urchin embryos.

Vidavsky N, Addadi S, Mahamid J, Shimoni E, Ben-Ezra D, Shpigel M, Weiner S, Addadi L

Proceedings of the National Academy of Sciences of the United States of America, 2014

doi:10.1073/pnas.1312833110.

RNA-induced conformational switching and clustering of G3BP drive stress granule assembly by condensation.

Guillén-Boixet J, Kopach A, Holehouse AS, Wittmann S, Jahnel M, Schlüßler R, Kim K, Trussina IREA, Wang J, Mateju D, Poser I, Maharana S, Ruer-Gruß M, Richter D, Zhang X, Guck J, Chang YT, Mahamid J, Honigmann A, Pappu RV, Hyman AA, Franzmann TM, Alberti S

Cell, 2020

doi:10.1016/j.cell.2020.03.049.

Design of Orthogonal Far-Red, Orange and Green Fluorophore-binding Proteins for Multiplex Imaging.

Tran L, Sharma S, Klein S, Jurgens D, Decarreau J, Liu B, Wang Y, Bera AK, Kang A, Woods J, Joyce E, Vafeados DK, Roullier N, Chen W, Lee GR, Mahamid J, Lavis LD, An L, Baker D

bioRxiv, 2025

doi:10.1101/2025.08.03.668343.

Protein condensates as aging Maxwell fluids.

Jawerth L, Fischer-Friedrich E, Saha S, Wang J, Franzmann T, Zhang X, Sachweh J, Ruer M, Ijavi M, Saha S, Mahamid J, Hyman AA, Jülicher F

Science (New York, N.Y.), 2020

doi:10.1126/science.aaw4951.

Determinants shaping the nanoscale architecture of the mouse rod outer segment.

Pöge M, Mahamid J, Imanishi SS, Plitzko JM, Palczewski K, Baumeister W

eLife, 2021

doi:10.7554/eLife.72817.

Tailoring cryo-electron microscopy grids by photo-micropatterning for in-cell structural studies.

Toro-Nahuelpan M, Zagoriy I, Senger F, Blanchoin L, Théry M, Mahamid J

Nature methods, 2020

doi:10.1038/s41592-019-0630-5.

Convolutional networks for supervised mining of molecular patterns within cellular context.

de Teresa-Trueba I, Goetz SK, Mattausch A, Stojanovska F, Zimmerli CE, Toro-Nahuelpan M, Cheng DWC, Tollervey F, Pape C, Beck M, Diz-Muñoz A, Kreshuk A, Mahamid J, Zaugg JB

Nature methods, 2023

doi:10.1038/s41592-022-01746-2.

Asprich mollusk shell protein: in vitro experiments aimed at elucidating function in CaCO3 crystallization

Politi Y, Mahamid J, Goldberg H, Weiner S, Addadi L

CRYSTENGCOMM, 2007

doi:10.1039/b709749b.

Locating macromolecular assemblies in cells by 2D template matching with cisTEM.

Lucas BA, Himes BA, Xue L, Grant T, Mahamid J, Grigorieff N

eLife, 2021

doi:10.7554/eLife.68946.

Phase separation of a yeast prion protein promotes cellular fitness

2018

doi:10.1126/science.aao5654.

A cryo-FIB lift-out technique enables molecular-resolution cryo-ET within native caenorhabditis elegans tissue.

Schaffer M, Pfeffer S, Mahamid J, Kleindiek S, Laugks T, Albert S, Engel BD, Rummel A, Smith AJ, Baumeister W, Plitzko JM

Nature methods, 2019

doi:10.1038/s41592-019-0497-5.

Interphase epichromatin: last refuge for the 30-nm chromatin fiber?

Xu P, Mahamid J, Dombrowski M, Baumeister W, Olins AL, Olins DE

Chromosoma, 2021

doi:10.1007/s00412-021-00759-8.

A hydrated crystalline calcium carbonate phase: Calcium carbonate hemihydrate.

Zou Z, Habraken WJEM, Matveeva G, Jensen ACS, Bertinetti L, Hood MA, Sun CY, Gilbert PUPA, Polishchuk I, Pokroy B, Mahamid J, Politi Y, Weiner S, Werner P, Bette S, Kolb U, Dinnebier R, Fratzl P, Zolotoyabko E

Science (New York, N.Y.), 2019

doi:10.1126/science.aav0210.

Bridging structural and cell biology with cryo-electron microscopy.

Nogales E, Mahamid J

Nature, 2024

doi:10.1038/s41586-024-07198-2.

A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation

Patel A, Lee HO, Jawerth L, Maharana S, Jahnel M, Hein MY, Stoynov S, Mahamid J, Saha S, Franzmann TM, Pozniakovski A, Poser I, Maghelli N, Royer LA, Weigert M, Myers EW, Grill S, Drechsel D, Hyman AA, Alberti S

Cell, 2015

doi:10.1016/j.cell.2015.07.047.

A focused ion beam milling and lift-out approach for site-specific preparation of frozen-hydrated lamellas from multicellular organisms

Mahamid J, Schampers R, Persoon H, Hyman AA, Baumeister W, Plitzko JM

Journal of structural biology, 2015

doi:10.1016/j.jsb.2015.07.012.

Crystallization pathways in bone.

Mahamid J, Addadi L, Weiner S

Cells, tissues, organs, 2011

doi:10.1159/000324229.

TEM bright field imaging of thick specimens: nodes in Thon ring patterns.

Tichelaar W, Hagen WJH, Gorelik TE, Xue L, Mahamid J

Ultramicroscopy, 2020

doi:10.1016/j.ultramic.2020.113023.

Liquid-to-solid phase transition of oskar ribonucleoprotein granules is essential for their function in Drosophila embryonic development.

Bose M, Lampe M, Mahamid J, Ephrussi A

Cell, 2022

doi:10.1016/j.cell.2022.02.022.

Tiling artifacts and trade-offs of feature normalization in the segmentation of large biological images.

Buglakova E, Archit A, D'Imprima E, Mahamid J, Pape C, Kreshuk A

arXiv, 2026

doi:10.48550/arXiv.2503.19545.

Fluorescence-based 3D targeting of FIB-SEM acquisition of small volumes in large samples.

Ronchi P, Machado P, D’Imprima E, Mizzon G, Best BT, Cassella L, Schnorrenberg S, Montero MG, Jechlinger M, Ephrussi A, Leptin M, Mahamid J, Schwab Y

bioRxiv, 2021

doi:10.1101/2021.01.18.427072.

Imaging cell biology.

Andrews B, Chang JB, Collinson L, Li D, Lundberg E, Mahamid J, Manley S, Mhlanga M, Nakano A, Schöneberg J, Van Valen D, Wu T', Zaritsky A

Nature cell biology, 2022

doi:10.1038/s41556-022-00960-6.

Liquid-to-solid phase transition of oskar RNP granules is essential for their function in the Drosophila germline.

Bose M, Mahamid J, Ephrussi A

bioRxiv, 2021

doi:10.1101/2021.03.31.437848.

Author Correction: stress fibres are embedded in a contractile cortical network.

Vignaud T, Copos C, Leterrier C, Toro-Nahuelpan M, Tseng Q, Mahamid J, Blanchoin L, Mogilner A, Théry M, Kurzawa L

Nature materials, 2020

doi:10.1038/s41563-020-00862-8.

Stress fibres are embedded in a contractile cortical network.

Vignaud T, Copos C, Leterrier C, Toro-Nahuelpan M, Tseng Q, Mahamid J, Blanchoin L, Mogilner A, Théry M, Kurzawa L

Nature materials, 2020

doi:10.1038/s41563-020-00825-z.

Cryo-EM structure of the native rhodopsin dimer in nanodiscs.

Zhao DY, Poege M, Morizumi T, Gulati S, Van Eps N, Zhang J, Miszta P, Filipek S, Mahamid J, Plitzko JM, Baumeister W, Ernst OP, Palczewski K

The Journal of biological chemistry, 2019

doi:10.1074/jbc.RA119.010089.

Molecular mechanism of glutaminase activation through filamentation and the role of filaments in mitophagy protection.

Adamoski D, Dias MM, Quesñay JEN, Yang Z, Zagoriy I, Steyer AM, Rodrigues CT, da Silva Bastos AC, da Silva BN, Costa RKE, de Abreu FMO, Islam Z, Cassago A, van Heel MG, Consonni SR, Mattei S, Mahamid J, Portugal RV, Ambrosio ALB, Dias SMG

Nature structural & molecular biology, 2023

doi:10.1038/s41594-023-01118-0.

ColabSeg: an interactive tool for editing, processing, and visualizing membrane segmentations from cryo-ET data.

Siggel M, Jensen RK, Maurer VJ, Mahamid J, Kosinski J

Journal of structural biology, 2024

doi:10.1016/j.jsb.2024.108067.

High-precision targeting workflow for volume electron microscopy.

Ronchi P, Mizzon G, Machado P, D'Imprima E, Best BT, Cassella L, Schnorrenberg S, Montero MG, Jechlinger M, Ephrussi A, Leptin M, Mahamid J, Schwab Y

The Journal of cell biology, 2021

doi:10.1083/jcb.202104069.

Mechanism of RNA polymerase I selection by transcription factor UAF.

Baudin F, Murciano B, Fung HKH, Fromm SA, Mattei S, Mahamid J, Müller CW

Science advances, 2022

doi:10.1126/sciadv.abn5725.

TRIM2 E3 ligase substrate discovery reveals zinc-mediated regulation of TMEM106B in the endolysosomal pathway.

Perez-Borrajero C, Stein F, Schweimer K, Rettel M, Schwarz JJ, Haberkant P, Lapouge K, Gayk J, Hoffmann T, Bhogaraju S, Noh KM, Savitski M, Mahamid J, Hennig J

EMBO reports, 2026

doi:10.1038/s44319-025-00667-3.

Genetically encoded multimeric tags for intracellular protein localisation in cryo-EM.

Fung KHH, Hayashi Y, Salo TV, Babenko A, Zagoriy I, Brunner A, Ellenberg J, Müller CW, Cuylen-Haering S, Mahamid J

bioRxiv, 2022

doi:10.1101/2022.12.10.519870.

Subtomogram averaging of helical filaments in cryo-electron tomography.

Zhang X, Mahamid J

bioRxiv, 2024

doi:10.1101/2024.03.04.583254.