Towards a Standardised Data Management Workflow:
a Focused Knowledge Exchange for the Planetary Biology Community.
Large, multimodal projects to understand biodiversity at the molecular level require a degree of coordination and data integration never previously realised. Using a manageable but complex data set including samples from TREC, this project will:
(A) Collaboratively define the data flow from sample to multimodal microscopy and -omics to open publication, through knowledge-exchange events and hackathons.
(B) Develop an efficient workflow to automate this data flow, using green compute principles and reducing time to publication.
(C) Create training resources supporting EMBL scientists and the wider research community to adopt the workflow and adapt it to their needs.
Data management and stewardship
BioImage Archive accessions:
TRaversing European Coastlines (TREC) Live Plankton High-Content Fluorescence Microscopy Dataset
FAIR imaging data training and consultation
We gave four editions of the REMBI workshop:
Project lead
