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EMBO Practical Course

Microbial metagenomics: a 360º approach

Overview

Course overview

This course provides a comprehensive overview of current metagenomic approaches for studying microbial communities, integrating experimental and computational methodologies within a single training framework. It covers the complete workflow, from environmental sampling and DNA extraction from diverse matrices (soil and water) to advanced sequencing and in silico data analysis.
Participants will receive hands-on training in DNA extraction methods and metabarcoding analysis using third-generation sequencing technologies (Nanopore/PacBio), enabling in situ characterization of microbial diversity. Cutting-edge topics such as phage genomics and single-cell approaches in metagenomics will also be addressed. The bioinformatics component will guide participants from raw sequence data processing through genome assembly, metagenome-assembled genome (MAG) reconstruction, functional annotation, and statistical analysis, using current best-practice and reproducible workflows.
Through lectures, practical sessions, and guided discussions, the course will present the latest advances in metagenomics and highlight its connections with related disciplines. Dedicated sessions on experimental design will allow participants to critically evaluate methodological choices and test their understanding.
Active learning will be promoted through poster sessions, discussion rounds, quizzes, and collaborative group work. Overall, the course equips participants with state-of-the-art skills and fosters international scientific exchange and collaboration in metagenomics research.

Learning outcomes

The course equips participants with state-of-the-art skills and fosters international scientific exchange and collaboration in metagenomics research. After the course, participants will be able to:

  • Construct their own metagenomic library
  • Analyse and organise their data
  • Interpret results, explore different databases, use different retrieval and analysis tools
  • Sequence analysis

Audience

This course is aimed at advanced PhD students and early post-doctoral researchers who are doing or planning to start research in the field of metagenomics.

Modules/resources

  • Experimental design
  • Extraction of metagenomic DNA
  • Construction of metagenomic libraries
  • Phage technology
  • 3rd generation sequencing (Nanopore)
  • Bioinformatic analysis of metagenomic data: data standards and submission, processing of raw data, assembly, functional annotation, overview of databases, retrieval and analysis tools.
  • Single-cell microbial genomics

What past participants say about the course

The course was an excellent blend of theoretical knowledge and practical experience, providing valuable insights into cutting-edge techniques and fostering meaningful connections with experts and peers in the field. It was an enriching and highly beneficial experience for my research and professional development.” – Muhammad Umair Amjad, National Institute for Biotechnology and Genetic English – Pakistan Institute of Engineering and Applied Sciences, Pakistan

It is difficult to find a course that succeeds in combining the lab part with the bioinformatics part but this course succeeded perfectly! The organization was perfect and the speakers were fantastic.” – Eleonora Moretti, Stazione Zoologica Anton Dohrn, Italy


This event has been granted the following EMBO sustainability badge:

Grade 3 of 3

Speakers

Speakers, trainers, and staff

Eugeni Belda

Sorbonne Université, IRD,

France

Vladimir Benes

EMBL Heidelberg

Germany

Mathias Boulanger

EMBL Heidelberg

Germany

Giuseppe D'Auria

Foundation for the Promotion of Health and Biomedical Research of the Valencian Community (Fisabio)

Spain

Pilar Domingo-Calap

Institute for Integrative Systems Biology

Spain

Celia Ferriol-González

Institute for Integrative Systems Biology

Spain

Anastasia Grekova

EMBL Heidelberg

Germany

Daniel Huson

University of Tübingen

Germany

Libusha Kelly

Albert Einstein College of Medicine

USA

Virtual speaker

Kostas Konstantinidis

Georgia Institute of Technology

USA

Raul Munoz Jimenez

MNCN-CSIC

Spain

Hilal Ozgur

EMBL Heidelberg

Germany

Gabrielle Potocki-Veronese

French National Institute for Agricultural Research (INRA)

France

Mariana Reyes Prieto

Foundation for the Promotion of Health and Biomedical Research of the Valencian Community (Fisabio)

Spain

Luis-Miguel Rodriguez-R

Aalborg University

Denmark

Jyoti Verma

Umeå University

Sweden

Laura Villacorta

EMBL Heidelberg

Germany

Kristian Vlahovicek

University of Zagreb

Croatia

Tobias Wenzel

Pontificia Universidad Católica de Chile

Chile

Virtual Speaker

Maria Paz Zorzano Mora

University of Aberdeen

UK

Scientific organisers

Vladimir Benes

EMBL Heidelberg

Germany

Giuseppe D'Auria

Foundation for the Promotion of Health and Biomedical Research of the Valencian Community (Fisabio)

Spain

Raul Munoz Jimenez

MNCN-CSIC

Spain

Mariana Reyes Prieto

Foundation for the Promotion of Health and Biomedical Research of the Valencian Community (Fisabio)

Spain

Elisabeth Zielonka

EMBL Heidelberg

Germany

Course organisers

Camilo Barbosa

EMBL Heidelberg

Germany

Iva Gavran

EMBL Heidelberg

Germany

Preliminary programme

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  • Some pre-course work (such as watching pre-recordings and protocol reading) with estimated time 0-10 hours will be required and will be shared in advance of the course
  • Some speakers will join virtually to give their lecture and Q&A, and the programme is subject to change
Day 0 (Onboarding): Monday, 22 March 2027
Time (Europe/Berlin)SpeakerLocation
15:00 – 17:00Overview of pre-course work, introduction to course content on EMBL eCampus and troubleshooting
Testing cloud / VM
Giuseppe D’Auria – FISABIO, Spain
Kostas Konstantinidis – Georgia Institute of Technology, USA
Elisabeth Zielonka – EMBL Heidelberg, Germany
Zoom
Day 1: Monday, 5 April 2026

Time (Europe/Berlin)SpeakerLocation
08:40 – 08:50Shuttle transfer to EMBL from HotelISG Hotel
09:00 – 09:15EMBL Welcome and house notes / Introduction to Training Lab and safety
Elisabeth Zielonka – EMBL Heidelberg, Germany
Courtyard Room A & B
09:15 – 09:30Introduction to the course
Giuseppe D’Auria – FISABIO, Spain
Courtyard Room A & B
09:30 – 10:30Flash talks by participants
chaired by Elisabeth Zielonka – EMBL Heidelberg, Germany
Courtyard Room A & B
10:30 – 10:45Coffee breakCourtyard Room A & B
10:45 – 11:45Metagenomics: Concepts, historical milestones, next advances, code of conduct in sampling and data usage
Giuseppe D’Auria – FISABIO, Spain
Courtyard Room A & B
11:45 – 12:45Lunch at EMBL canteenEMBL Canteen
12:45 – 13:45Metagenomics library preparation for NGS
Vladimir Benes – EMBL Heidelberg, Germany
Courtyard Room A & B
13:45 – 14:45Participants challenges, expectations and case studies
Elisabeth Zielonka – EMBL Heidelberg, Germany
Courtyard Room A & B
14:45 – 15:45The impact of Metagenomics, on genes and genomes discovery
Gabrielle Potocki-Veronese – INRA-LISBP, France
Courtyard Room A & B
15:45 – 16:15Coffee breakCourtyard Room Foyer
16:15 – 17:15Solving problems and questions: Introduction to Linux and R based on pre-recorded lecture 1 and 2
Giuseppe D’Auria – ISABIO, Spain
Courtyard Room A & B
17:15 – 19:15Poster numbers (dedicated 1-10 slots) with drinksHelix A
19:15 – 20:15Dinner at EMBL CanteenEMBL Canteen
20:15 – 20:25Shuttle transfer to HotelATC Entrance
Day 2: Tuesday, 6 April 2027
Time (Europe/Berlin)SpeakerLocation
08:40 – 08:50Shuttle transfer to EMBL from HotelISG Hotel
08:50 – 09:00Overview of the day
Raúl Muñoz – MNCN-CSIC, Spain
Courtyard Room A & B
09:00 – 10:45Practical session 1: Water and soil/biofil sampling from EMBL’s pond
Starting DNA extraction

Trainers:
Raúl Muñoz Jiménez – MNCN-CSIC, Spain
Pilar Domingo-Calap – University of Valencia, Spain
Celia Ferriol-González – University of Valencia, Spain
2 helpers from EMBL Heidelberg
Training Lab B
10:45 – 11:15Coffee breakCourtyard Room Foyer
11:15 – 12:45Practical session 2: Extraction of environmental DNA in groups and DNA quality control
Trainers: Raul Muñoz – MNCN-CSIC, Spain and 4 EMBL helpers
Training Lab B
12:45 – 13:45Lunch at EMBL canteenEMBL Canteen
13:45 – 14:30Practical Session 3: Nanopore
16S PCR setup

Trainers: Hilar Özgür – EMBL Heidelberg, Germany, Laura Villacorta – EMBL Heidelberg, Germany and 2 trainers from EMBL Heidelberg
Courtyard Room A & B
14:30 – 15:30Single cells genomics in droplets
Tobias Wenzel – Pontificia Universidad Católica de Chile, Chile
(Virtual speaker)
Courtyard Room A & B
15:30 – 15:45Coffee breakCourtyard Room Foyer
15:45 – 17:00Practical session 3: Nanopore (continued)
16S PCR cleanup, finishing library preparation and starting sequencing run, followed by Genomics Core Facility Tour

Trainers:
Hilar Özgür – EMBL Heidelberg, Germany
Laura Villacorta – EMBL Heidelberg, Germany and 2 trainers from EMBL Heidelberg
Training Lab B
17:00 – 17:15Coffee breakCourtyard Room Foyer
17:15 – 19:15Practical session 3: Nanopore (continued)
16S analysis/ DNA cleanup and Sequencing start, followed by Genomics Core Facility Tour

Trainers:
Hilar Özgür – EMBL Heidelberg, Germany
Laura Villacorta – EMBL Heidelberg, Germany and 2 trainers from EMBL Heidelberg
Training Lab B
19:15 – 20:15Dinner at EMBL CanteenEMBL Canteen
20:15 – 20:30Shuttle transfer to HotelATC Entrance
Day 3: Wednesday, 7 April 2027
Time (Europe/Berlin)SpeakerLocation
08:40 – 08:50Shuttle transfer to EMBL from HotelISG Hotel
08:50 – 09:00Overview of the day
Giuseppe D’Auria – Fisabio, Spain
Courtyard Room A & B
09:00 – 10:00Phages as biotechnological tools against superbugs
Pilar Domingo-Calap – University of Valencia, Spain
Courtyard Room A & B
10:00 – 10:30Group Discussion: Metagenomic DNA extraction results
Moderators: Raul Muñoz – MNCN-CSIC, Spain and Giuseppe D’Auria – FISABIO, Spain
Training Lab B
10:30 – 11:00Coffee breakCourtyard Room Foyer
11:00 – 12:00Practical session 4: Phage technology
Phage 4.1 – Samples preparation, cleaning and inoculation

Pilar Domingo-Calap – University of Valencia, Spain
Celia Ferriol-González – University of Valencia, Spain
Raúl Muñoz Jiménez – MNCN-CSIC, Spain
2 trainers helpers from EMBL Heidelberg
Training Lab B
12:00 – 13:00LunchEMBL Canteen
13:00 – 14:00What brings a metagenomic approach in cardiometabolic and nutrition-related disorders?
Eugeni Belda – National Institute for Health and Medical Research (Inserm), France
Courtyard Room A & B
14:00 – 14:30Coffee breakCourtyard Room Foyer
14:30 – 15:30Metagenomics for planetary protection and the search for life on Mars
Maria Paz Zorzano Mora – University of Aberdeen, United Kingdom
Courtyard Room A & B
15:30 – 16:15Comparison of sequencing technologies Nanopore, 16S, PacBio
Giuseppe D’Auria – FISABIO, Spain
Courtyard Room A & B
16:15 – 16:45Coffee breakCourtyard Room Foyer
16:45 – 17:45Pacific Bioscience (PacBio) sequencing for metagenomics
Vladimir Benes – EMBL Heidelberg, Germany
Courtyard Room A & B
17:45 – 18:30Emerging young scientist lecture: Community structure and functional potential of psychrophiles in Patagonian glaciers
Anastasiia Grekova – EMBL Heidelberg, Germany
Courtyard Room A & B
18:30 – 19:15Using AI to annotate phage genomes in metagenomic samples
Libusha Kelly – Albert Einstein College of Medicine, USA (virtual speaker)
Courtyard Room A & B
Day 4: Thursday 8 April 2027
Time (Europe/Berlin)SpeakerLocation
08:40 – 08:50Shuttle transfer to EMBL from HotelISG Hotel
08:50 – 09:00Overview of the day
Pilar Domingo-Calap -University of Valencia, Spain
Courtyard Room A & B
09:00 – 10:45Practical session 4: Phage technology (continued)
Phage 4.2 – Checking phage plaques and piking

Pilar Domingo-Calap – University of Valencia, Spain
Celia Ferriol-González – University of Valencia, Spain
Raúl Muñoz Jiménez – MNCN-CSIC, Spain
2 trainers helpers from EMBL Heidelberg
Training Lab B
10:45 – 11:45Coffee breakCourtyard Room Foyer
11:45 – 12:45Metabolomic profiling of microbial communities
Mariana Reyes Prieto – FISABIO, Spain
Courtyard Room A & B
12:45 – 13:45LunchEMBL Canteen
13:45 – 14:45Practical session 5: Functional and taxonomic analysis with MGnify
TBC
Computer Training Lab
14:45 – 15:15Coffee breakCourtyard Room Foyer
15:15 – 16:15Practical session 5: Functional and taxonomic analysis with MGnify (continued)
TBC
Computer Training Lab
16:15Free evening with walking tour of Heidelberg downtown (shuttle transfer to city centre)ATC Entrance
Day 5: Friday, 9 April 2027

Time (Europe/Berlin)SpeakerLocation
08:40 – 08:50Shuttle transfer to EMBL from HotelISG Hotel
08:50 – 09:00Overview of the day
Mariana Reyes – FISABIO, Spain
Courtyard Room A & B
09:00 – 10:00EPI2ME and data analysis of Nanopore 16S soil samples
Giuseppe D’Auria – FISABIO, Spain
Mariana Reyes Prieto – FISABIO, Spain
Courtyard Room A & B
10:00 – 10:15Coffee breakCourtyard Room Foyer
10:15 – 11:45Practical session 4: Phage (continued)
Phage 4.3 – Phage amplification titration

Pilar Domingo-Calap – University of Valencia, Spain
Celia Ferriol-González – University of Valencia, Spain
Raúl Muñoz Jiménez – MNCN-CSIC, Spain
2 trainers helpers from EMBL Heidelberg
Training Lab B
11:45 – 12:45LunchEMBL Canteen
12:45 – 14:45Practical session 6: Genomics and species definition
The microbial species definition and its challenges
The MiGA web-server for species identification: the genome-equivalent of RDP/Silva
SSU web-servers

Kostas Konstantinidis – Georgia Institute of Technology, USA
Luis-Miguel Rodriguez-R – Aalborg University, Denmark
Giuseppe D’Auria – FISABIO, Spain
Mariana Reyes Prieto – FISABIO, Spain
Computer Training Lab
14:45 – 15:15Coffee breakCourtyard Room Foyer
15:15 – 17:15Practical session 6: Genomics and species definition (continued)
Analysis of 100s of metagenomes shows that bacterial species exist
Tools for specialized analyses of metagenomes

Kostas Konstantinidis – Georgia Institute of Technology, USA
Luis-Miguel Rodriguez-R – Aalborg University, Denmark
Giuseppe D’Auria – FISABIO, Spain
Mariana Reyes Prieto – FISABIO, Spain
Computer Training Lab
17:15 – 18:00From Community to Cell: Resolving Complex Microbial Communities Using Single-Cell Metagenomics
Jyoti Verma – Umeå University, Sweden
Courtyard Room A & B
18:00 – 19:00Canteen dinnerEMBL Canteen
19:00 – 21:00Poster numbers (dedicated 11-20 slots) with drinksHelix A
21:00 – 21:10Shuttle transfer to HotelATC Entrance
Day 6: Saturday, 10 April 2027

Time (Europe/Berlin)SpeakerLocation
08:40 – 08:50Shuttle transfer to EMBL from HotelISG Hotel
08:50 – 09:00Overview of the day
Giuseppe D’Auria – FISABIO, Spain
Courtyard Room A & B
09:00 – 10:00Practical lecture: Introduction to 16S rDNA profiling (Illumina/PacBio)
Mariana Reyes Prieto – FISABIO, Spain
Courtyard Room A & B
10:00 – 10:30Coffee breakCTL Foyer
10:30 – 12:30Practical session 7: 16S rDNA profiling
Introduction to 16S rDNA profiling (Illumina/PacBio)

Mariana Reyes Prieto – FISABIO, Spain
Giuseppe D’Auria – FISABIO, Spain
Luis-Miguel Rodriguez-R – Aalborg University, Denmark
1 helper from EMBL
Computer Training Lab
12:30 – 13:30LunchEMBL Canteen
13:30 – 14:45Practical session 7: 16S rDNA profiling (continued)
Practice to 16S rDNA profiling (Illumina/PacBio)

Mariana Reyes Prieto – FISABIO, Spain
Giuseppe D’Auria – FISABIO, Spain
Luis-Miguel Rodriguez-R – Aalborg University, Denmark
1 helper from EMBL
Computer Training Lab
14:45 – 15:00Coffee breakCTL Foyer
15:00 – 16:30Practical session 8: Genome-Resolved Metagenomic
Kostas Konstantinidis – Georgia Institute of Technology, USA
Luis-Miguel Rodriguez-R – Aalborg University, Denmark
Mariana Reyes Prieto – FISABIO, Spain
Giuseppe D’Auria – FISABIO, Spain
Computer Training Lab
16:30 – 17:00Coffee breakCTL Foyer
17:00 – 19:00Practical session 8: Genome-Resolved Metagenomic (continued)
Kostas Konstantinidis – Georgia Institute of Technology, USA
Luis-Miguel Rodriguez-R – Aalborg University, Denmark
Mariana Reyes Prieto – FISABIO, Spain
Giuseppe D’Auria – FISABIO, Spain
Computer Training Lab
19:00 – 19:15Shuttle transfer to HotelEMBL bus stop
19:30 – 21:30Dinner at ISG hotel followed by guided discussion on responsible conduct of research in microbial metagenomics studiesISG hotel

Day 7: Sunday, 11 April 2027

Time (Europe/Berlin)SpeakerLocation
08:40 – 08:50Shuttle transfer to EMBL from HotelHotel
08:50 – 09:00Overview of the day
Kristian Vlahovicek – University of Zagreb, Croatia
Computer training lab
09:00 – 10:00Practical session 9: Metagenomic profiling, ORF finding and functional annotation
Giuseppe D’Auria – FISABIO, Spain
Kristian Vlahovicek – University of Zagreb, Croatia
Mariana Reyes Prieto – FISABIO, Spain
1 helper from EMBL
Computer training lab
10:00 – 10:30Coffee breakCTL Foyer
10:30 – 12:30Analysis Tools Overview: Translational optimization for functional profiling of metagenomes
Kristian Vlahovicek – University of Zagreb, Croatia
Computer training lab
12:30 – 13:30LunchEMBL Canteen
13:30 – 14:45Practical session 10: coRdon (Bioconductor)
Kristian Vlahovicek – University of Zagreb, Croatia
Giuseppe D’Auria – FISABIO, Spain
Mariana Reyes Prieto – FISABIO, Spain
1 helper from EMBL
Computer training lab
14:45 – 15:00Coffee breakCTL Foyer
15:00 – 17:00Case Studies – student presentation time
All trainers and speakers
Computer training lab
17:00 – 17:45Shuttle transfer to downtown with a short stop at the hotel
17:45 – 22:00Free time and Downtown dinner
Day 8: Monday, 12 April 2027
Time (Europe/Berlin)SpeakerLocation
08:40 – 08:50Shuttle transfer to EMBL from HotelISG Hotel
08:50 – 09:00Overview of the day
Giuseppe D’Auria – FISABIO, Spain
Courtyard Room A & B
09:00 – 10:00Practical session 11: Microscopic observation of natural populations
Giuseppe D’Auria – FISABIO, Spain
Raúl Muñoz Jiménez – MNCN-CSIC, Spain
Mariana Reyes Prieto – FISABIO, Spain
1 helper from EMBL Heidelberg
Training Lab B
10:00 – 10:30Coffee breakCourtyard Room Foyer
10:30 – 12:00Practical session 12: Optimizing analysis of large metagenomic datasets. MEGAN
Daniel Huson – University of Tübingen, Germany
Kristian Vlahovicek – University of Zagreb, Croatia
Giuseppe D’Auria – FISABIO, Spain
Mariana Reyes Prieto – FISABIO, Spain
Computer Training Lab
12:00 – 13:00LunchEMBL Canteen
13:00 – 14:30Practical session 12: Optimizing analysis of large metagenomic datasets. MEGAN (continued)
Daniel Huson – University of Tübingen, Germany
Kristian Vlahovicek – University of Zagreb, Croatia
Giuseppe D’Auria – FISABIO, Spain
Mariana Reyes Prieto – FISABIO, Spain
Computer Training Lab
14:30 – 15:00Getting what we cannot see: a deep dive into modern sampling strategies in metagenomics
Giuseppe D’Auria – FISABIO, Spain
Raúl Muñoz Jiménez – MNCN-CSIC, Spain
Courtyard Room A & B
15:00 – 15:30Course wrap-up by organisers, students’ feedbackCourtyard Room A & B
15:30 – 16:00Shuttle transfer to Heidelberg train
station
ATC Entrance

Practical information

Registration fees

The course is limited to 20 participants. For selection purposes, please note that your application will not be considered without a letter of motivation.

Registration fees

Your registration for the event includes:

  • Admission to the event
  • Possibility to submit an abstract (if applicable)
  • Meals and coffee breaks
  • Course materials
  • Access to the e-learning platform
  • A letter to support your visa application (for more information, check the ‘Travel and accommodation’ tab)

For this EMBO course, the fees include accommodation and transportation to and from the ISG Hotel to the venue

Academia€550
PhD Student€550
Industry€1000

Confirmation and payment

The registration fee should be paid only after acceptance to the course. The results will be announced approximately 3 weeks after the application deadline.

Cancellation policy

If you are no longer able to take part in the course, please inform your course contact responsible for this event. Your registration and the submitted motivation letter will be deleted.

Please also check our Terms and Conditions for the cancellation policy.

Motivation letter submission and selection

After you have logged in and successfully registered, you will receive an email asking you to submit your motivation letter. Click on the link provided and enter your motivation letter in the text box provided. Alternatively you can submit your motivation letter by clicking on the link on the confirmation page directly after registering.

Instructions

  1. Include your relevant skills, experience and qualifications showing why you would be suitable for the course.
  2. Explain why you would like to attend, including what you can contribute and how you think you will benefit from the course.

Please note:

  • The limit of 2,000 characters refers to manually typed text and excludes spaces. If an error occurs try using a different web browser (preferably Google Chrome or Mozilla Firefox).
  • If you copy-paste the text into the form, hidden formatting might still be included which may cause the text to exceed the 2,000 character limit resulting in an error message. We recommend you clear all formatting before pasting in the text.
  • If you have special symbols in your text, make sure you are using Unicode characters, otherwise these will not be recognised.

For detailed instructions, please watch our video on how to submit a course motivation letter.

Please note it is not possible to apply after the motivation letter deadline!

Selection

The selection results will be announced by email to all applicants. We aim to announce 3 weeks (21 days) after the motivation letter submission deadline but delays may occur.

Further details

For further information about registration and motivation letter submission please refer to the FAQ page.

Financial assistance

Financial assistance

Limited financial assistance is provided by the EMBL Advanced Training Centre Corporate Partnership Programme and EMBO in the form of travel grants, childcare grants, and accessibility grants.

Your place in the meeting is only confirmed by paying the registration fee, which is mandatory even when receiving a fee waiver.

Travel grant

The travel grant will cover the cost of travel (airfare, train, bus, taxi, and visa) and/or registration fees and is provided up to specified caps which are normally as follows:

  • up to €500 for any participant travelling to an EMBO Practical Course.
  • up to €1000 for any participant working in Chile, India, Singapore, or Taiwan travelling to an EMBO Practical Course.

The organisers may reduce the grant cap to accommodate more participants. Recipients will be notified of their travel cap amount when they are informed of the outcome of their application. Original receipts must be provided with your signature for all costs incurred within two months of completion of travel. Scanned copies cannot be accepted.

Childcare grants

There is the possibility to apply for a childcare grant to offset child care costs incurred by participants, speakers, trainers, and organisers when attending a course. Eligible costs include (but are not limited to) fees for a babysitter, child-care facility, or travel costs for a caregiver. Please note that priority will be given to early-stage researchers. There is a limited amount of funding available for the childcare grants and funds will be distributed amongst eligible applicants.

Boehringer Ingelheim Fonds travel grant

Applies to selected courses only. Availability will be indicated during the abstract or motivation letter submission process.

This grant covers costs related to your attendance to the course (registration, travel, and accommodation costs). The grant is restricted to PhD students and postdocs who conduct basic biomedical research.
Whether you are eligible to apply for a travel grant, depends on when you received your university entrance qualification (e.g. Abitur, A-Levels, High School Diploma, Final State Examination):

  • for PhD and MD students, as well as graduates, the university entrance qualification must not have been obtained more than 11 years ago at the time of the envisaged course
  • for postdocs, the university entrance qualification must not have been obtained more than 13 years ago at the time of the envisaged course

EMBO accessibility grant

For EMBO Practical Course participants with accessibility needs, there is the possibility to apply for an accessibility grant to offset costs incurred by participants or speakers when participating at a course. Eligible costs include costs incurred for equipment or adaptations to the course environment, or travel costs for an event companion to assist the participant or speaker during the course where necessary. While we do our best to accommodate needs, please note that extensive changes to the course environment might not be possible. Priority will be given to early-stage researchers.

A maximum amount of €500 can be awarded per participant applying for an EMBO accessibility grant. In order to apply for this grant for EMBO Practical Courses, you must be registered by the application deadline. 

Application

You may apply for financial assistance when submitting your motivation letter. In the application system, you will be asked which type of grant you want to apply for.

Applications for financial support will not influence the outcome of the selection results.

Results

Grant allocations are announced by email to all applicants after the selection results.

Selection for financial assistance is based on scientific merit, your current work or study location, the reasons for needing financial support, and the impact this event will have on your career.

Please note that for childcare grants, priority will be given to early-stage researchers.

Further details

Check out this list of external funding opportunities

For further information about financial assistance please refer to the FAQ page.

Travel and accommodation

Visa

We can send you a registration confirmation to support your visa procedure (not an official invitation letter). Please contact the Conference Officer responsible for your event. Read our FAQ for more information.

Travel

If you are travelling to Heidelberg via aeroplane, train, car, or long-distance bus, you can find useful information on our travel information page.

Accommodation

Accommodation in twin rooms, including breakfast, is also part of the registration fee. Accommodation will be booked for the selected participants at the ISG Hotel for the default dates of 4 to 12 April 2027 (8 nights).

In case you would like to have a single room, please let the hotel know and please note that you will be required to pay a surcharge per night (availability of single rooms may be limited). This should be paid by you directly to the ISG Hotel during your stay.

We recommend that all course participants stay at the ISG Hotel for the course.

Local transportation

Course shuttle buses

Shuttle buses will go from the ISG Hotel to EMBL and back, mornings and evenings. A bus schedule and location of the bus stops will be made available prior to the meeting.

Other local transportation

In addition to the shuttle busses, there is also the public bus 28 that serves the EMBL campus and taxis can be easily booked at any time. For more information, please refer to the local transportation (RNV) website.

You may also walk from the ISG Hotel to EMBL (takes up to 30 minutes)

Map to walk from ISG Hotel to EMBL

Further details

Address: EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany

For more information about accommodation and travel, please refer to the FAQ page.

On-site information

Here you will find useful information for when you are onsite at the event.

Catering

All meals and coffee breaks are included in the registration fee. Our catering staff will prepare a variety of vegetarian meals, meat and fish dishes, soups, pasta, fresh fruit and vegetables, as well as a variety of desserts.

Please wear your badge at all times when serving yourself.

No food or drinks are allowed in the computer training lab or wet labs.

Internet

Wi-Fi is available on campus using the EMBL-Events network and the event specific password, which will be provided on site. The eduroam network (secure, worldwide roaming access service developed for the international research and education community) is also available.

Photography

During the conference, an EMBL Photographer may be taking photos. If you would not like to appear in these, please inform the photographer or a member of the Course and Conference Office.

Charging stations

There are lockers available next to the stairs leading down into the Auditorium. You will find some of those equipped with sockets to charge your smartphone/tablet etc.

In most places the electricity is 220 volts AC (50 cycles). An adaptor and a plug that fits the German socket may be needed for your appliances/laptop (i.e. American, Japanese, etc.). A USB charging station for electronic devices is available at the registration desk.

Printing

We can help to print your boarding pass/train ticket. Please send it to events@embl.de and collect your print-outs at the registration desk.

Luggage

There are lockers available on-site to store your luggage, which require a 2 EURO coin to operate. There is another luggage room on level E0, which is free to use but remains unlocked during the course.

Lost and found

‘’Lost and Found’’ items are kept at the registration desk until the end of the course.

Nursing room

There is a nursing room available in the ATC Rooftop Lounge on level A29.

Room for prayers, meditation, and yoga

There is a room for prayer, yoga, and meditation, located on level E0 behind the Auditorium. Please be respectful of others using the room.

EMBL campus map

Health and safety notes

Please take a moment to read our health and safety policy.

  • Do not smoke in any EMBL building.
  • Eating and drinking is prohibited in the Auditorium and all laboratories.
  • Do not enter any restricted areas or the laboratories unless instructed to do so.

If first aid is required

  • The first aid room is located next to the ATC Registration Desk (room 10- 205).
  • Dial the Emergency number 222 from any EMBL internal phone only.
  • Be prepared to answer the following questions: Where is the accident? What happened? How many injured?
  • Emergency number 06221-387 7821 from mobile phones.
  • Please report all accidents to the conference officer at the registration desk.

In case of fire

  • Press the nearest fire alarm button or the Emergency number 222 from any internal phone.
  • A loud fire alarm will go off if an evacuation is required. On hearing the alarm leave the building immediately following the escape route and fire wardens and head to one of the meeting points
  • Do not use the lifts.

Beyond first aid

The Heidelberg University Hospital or ‘Universitätsklinikum‘ has a 24 hour accident and emergency facility and is at ‘Im Neuenheimer Feld 672’. It is an 8 km or a 20 minute taxi ride away from EMBL. In a medical emergency, the ambulance service generally transports patients to this hospital.

Please remember to bring your own medication, if needed, to the conference. Note that the next pharmacy is a 4-minute drive from the EMBL, but for many medications you will be required to see a doctor to get a prescription.

Ensure in advance that your medical insurance will cover you during your visit in the event that you do need to see a doctor while in Heidelberg.

The EMBL course and conference office team are able to advise you on where to turn for emergency or non-emergency medical treatment in Heidelberg and can assist you in making appointments and / or arranging transport to get to the pharmacy or a doctor of your choice if necessary. Please note, we are not however permitted to personally accompany you off-campus.

Sightseeing

A variety of activities in Heidelberg can be found on the website of Heidelberg Marketing.

Technical requirements and event software

Technical requirements

Below you will find the software and technical requirements for this course. You will need admin rights to be able to install the software on your computer and we recommend you try this before the course. If you do not have admin rights, please contact your technical support team in advance to make sure the software can be installed.

Additional software

The EMBL eCampus learning platform will be used to collaborate, communicate, and network with all course participants. All participants will receive information on how to join shortly before the course. We recommend using Chrome, Safari or Mozilla Firefox browsers for eCampus. 

Other information

While using the software during the course, please make sure you have nothing else using your bandwidth. We recommend using a wired connection.

Additional information

Please find additional information including FAQs and terms and conditions on our Information for Participants page.

Sponsors

Sponsorship opportunities

We offer a variety of event sponsoring possibilities, with the flexibility to select a set sponsorship package or combine individual sponsorship options to suit your event budget. Discounts are available for companies sponsoring multiple events at EMBL Heidelberg. View other conferences, or contact sponsorship@embl.org. for further information.

If you are interested in becoming a media partner of this event, please visit our media partnerships webpage.

Warning

EMBL wishes to warn sponsors of EMBL conferences and courses of fraudulent schemes purporting to offer sponsorship opportunities on behalf of EMBL or affiliated with EMBL officials. One current scam campaign of which we are aware is conducted using the name ‘Judy Eastman’ (judy@gopcontact.a2hosted.com) and entails approaches to sponsors offering sponsorship opportunities on EMBL’s behalf. Please be kindly advised that all relevant communication regarding sponsorship of EMBL conferences, symposia and courses is handled by EMBL directly and is sent from an official EMBL account. EMBL does not work with any external providers on sponsorship acquisition.

Please also note that:

  • EMBL never provides attendee lists for purchase. Any offers of such are fraudulent.
  • EMBL will never call or email you to ask for your credit card details or to request a payment.
  • All payments are on invoice.

Suspicious communications purportedly from, for or on behalf of EMBL should be reported to EMBL at the following email address sponsoring@embl.de.

Date: 5 - 12 Apr 2027

Location: EMBL Heidelberg

Venue: EMBL Advanced Training Centre


Deadline(s):

Application: 30 Nov 2026


Organisers:

  • Vladimir Benes
    EMBL Heidelberg. Germany
    • Guiseppe D'Auria
      Foundation for the Promotion of Health and Biomedical Research of the Valencian Community (FISABIO), Spain
      • Raúl Muñoz
        MNCN-CSIC, Spain
        • Mariana Reyes Prieto
          Foundation for the Promotion of Health and Biomedical Research of the Valencian Community (FISABIO), Spain
          • Elisabeth Zielonka
            EMBL Heidelberg. Germany

          Contact: Iva Gavran


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