Microbial metagenomics: a 360º approach

Overview

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Course overview

This course provides a comprehensive overview of current metagenomic approaches for studying microbial communities, integrating experimental and computational methodologies within a single training framework. It covers the complete workflow, from environmental sampling and DNA extraction from diverse matrices (soil and water) to advanced sequencing and in silico data analysis.

Participants will receive hands-on training in DNA extraction methods and metabarcoding analysis using third-generation sequencing technologies (Nanopore/PacBio), enabling in situ characterisation of microbial diversity. Cutting-edge topics such as phage genomics and single-cell approaches in metagenomics will also be addressed.

The bioinformatics component will guide participants from raw sequence data processing through genome assembly, metagenome-assembled genome (MAG) reconstruction, functional annotation, and statistical analysis, using current best-practice and reproducible workflows.

Through lectures, practical sessions, and guided discussions, the course will present the latest advances in metagenomics and highlight its connections with related disciplines. Dedicated sessions on experimental design will allow participants to critically evaluate methodological choices and test their understanding.

Learning outcomes

The course equips participants with state-of-the-art skills and fosters international scientific exchange and collaboration in metagenomics research.

Audience

This course is aimed at advanced PhD students and post-doctoral researchers who are doing or planning to start research in the field of metagenomics.

What past participants say about the course

“The course was an excellent blend of theoretical knowledge and practical experience, providing valuable insights into cutting-edge techniques and fostering meaningful connections with experts and peers in the field. It was an enriching and highly beneficial experience for my research and professional development.” – Muhammad Umair Amjad, National Institute for Biotechnology and Genetic English – Pakistan Institute of Engineering and Applied Sciences, Pakistan

“It is difficult to find a course that succeeds in combining the lab part with the bioinformatics part but this course succeeded perfectly! The organization was perfect and the speakers were fantastic.” – Eleonora Moretti, Stazione Zoologica Anton Dohrn, Italy

Sponsors

Sponsorship opportunities

We offer a variety of event sponsoring possibilities, with the flexibility to select a set sponsorship package or combine individual sponsorship options to suit your event budget. Discounts are available for companies sponsoring multiple events at EMBL Heidelberg. View other conferences, or contact sponsorship@embl.org. for further information.

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