Ami Bhatt
Stanford University
USA
EMBL Conference
This conference will take place at EMBL Heidelberg, with the option to attend virtually.
The gut microbiome is well established as being linked to human health and disease. The complex, highly personalised communities living in our gut encode 50–100 times more genes than our genome, with far-reaching effects that extend beyond the gut to our immune system and brain. In contrast to our genome, our microbiome is actionable, offering unprecedented opportunities for interventions. However, progress in this direction has been slow due to our limited basic molecular and ecological understanding of these complex microbial communities.
Over the past two decades, data-driven research has revealed important features of the human gut microbiome, such as its resilience, diversity, and highly personalised composition. However, our current view of its functional capabilities and interaction with the host is still largely descriptive. As the field now strives for causal and mechanistic insights to achieve a deeper understanding of the links between the microbiome and human health, progress is being hindered by a lack of model gut microorganisms and foundational functional knowledge.
The current knowledge of bacterial gene functions, pathways and cellular architecture is based on only a few model bacteria, which do not capture the phylogenetic and genetic diversity of the gut microbiota. As a consequence, the vast majority of genes in the gut microbiome remain “dark matter” with respect to function, that is, of elusive or completely unknown function.
This conference presents the first efforts to systematically address this vast dark genetic matter in the human gut microbiome. It aims to foster discussion and chart a framework for engaging in this direction in a systematic and collaborative manner in the future. What tools and approaches are needed? What knowledge will advance microbiome research, distinguish between correlative and causal links, reveal underlying molecular mechanisms, and ultimately progress health applications?
To advance our functional understanding and microbiome engineering capabilities, the meeting will focus on selecting and establishing new model species for the human gut microbiome. This has been the core focus of the EMBL Microbial Ecosystems Transversal Theme in recent years, and the outcomes of this work will be presented.
We envision that this meeting will stimulate broader discussions on how to harness the vast functional diversity of microbes, which impact every ecosystem on the planet.
Stanford University
USA
Institut Pasteur
France
Shandong University
China
Stanford University
USA
Center for Plant Biotechnology and Genomics CBGP (UPM-INIA-CSIC)
Spain
Albert Einstein College of Medicine
USA
Max Planck Institute for Infection Biology
Germany
Max Planck Institute for Biology Tübingen
Germany
Newcastle University
UK
ETH Zurich
Switzerland
EMBL Heidelberg
Germany
University of Trento
Italy
Stanford University
USA
Stanford University
USA
Weizmann Institute of Science
Israel
Technical University of Munich
Germany
University of Luxembourg
Luxembourg
Gulbenkian Institute for Molecular Medicine
Portugal
EMBL Heidelberg
Germany
EMBL-EBI
UK
University of Tübingen
Germany
University of Cambridge
UK
EMBL Heidelberg
Germany
EMBL Heidelberg
Germany
Are you on social media? Post using #EMBLGutMicrobeFunction and don’t forget to tag @EMBLEvents.
| Time (Europe/Berlin) | Session |
|---|---|
| 11:00 – 13:00 | Registration and light refreshments |
| 13:00 – 13:15 | Opening remarks |
| Session 1: Data-driven functional discovery Chair: tbc | |
| 13:15 – 13:45 | Title: tbc Amy Bhatt – Stanford University, USA |
| 13:45 – 14:00 | Selected short talk #1 |
| 14:00 – 14:30 | Unravelling microbial functions and metabolism at the sub-species and strain level Nicola Segata – University of Trento, Italy |
| 14:30 – 15:00 | Title: tbc Libusha Kelly – Albert Einstein College of Medicine, USA |
| 15:00 – 15:30 | Coffee Break |
| Session 1: Data-driven functional discovery & From data driven functional discovery to experiments Chair: tbc | |
| 15:30 – 16:00 | Microbiomes as repositories for new immune functions Rotem Sorek – Weizmann Institute of Science, Israel |
| 16:00 – 16:15 | Selected short talk #2 |
| 16:15 – 16:45 | Deciphering human microbiome dynamics and evolution at a whole genome resolution Felix Key – Max Planck Institute for Infection Biology, Germany |
| 16:45 – 17:00 | Selected short talk #3 |
| 17:00 – 17:15 | Selected short talk #4 |
| 17:15 – 17:30 | Selected short talk #5 |
| 17:30 – 18:30 | Pre-dinner refreshments |
| 18:30 – 19:30 | Round table Discussion – New model species of the gut microbiome |
| 19:30 – 21:00 | Dinner in EMBL canteen |
| 21:00 – 22:00 | Poster sneak peak |
| Time (Europe/Berlin) | Session |
|---|---|
| Session 2: Genetic tools for mapping gene function and interactions Chair: tbc | |
| 09:00 – 09:30 | Functional genetics of the colorectal cancer microbiome KC Huang – Stanford University, USA |
| 09:30 – 09:45 | Selected short talk # 6 |
| 09:45 – 10:00 | Selected short talk # 7 |
| 10:00 – 10:30 | Genetic perturbation of gut Bacteria with engineered phage vectors and CRISPR David Bikard – Institute Pasteur, France |
| 10:30 – 11:00 | Coffee break |
| 11:00 – 11:30 | Microbiome interaction with immune therapy in liver cancer Ruth Ley – Max Planck Institute for Biology, Germany |
| 11:30 – 11:45 | Selected short talk # 8 |
| 11:45 – 12:15 | Invited speaker #9 |
| 12:15 – 12:30 | Selected short talk # 9 |
| 12:30 – 13:00 | Flash talks |
| 13:00 – 14:00 | Lunch break |
| 14:00 – 16:00 | Poster session 1 (odd numbers) |
| Session 3: Multi-omics for mapping gene function and cellular organization Chair: tbc | |
| 16:00 – 16:30 | Title: tbc Misha Savitski – EMBL Heidelberg, Germany |
| 16:30 – 16:45 | Selected short talk #10 |
| 16:45 – 17:15 | Title: tbc Maria Zimmermann – EMBL Heidelberg, Germany |
| 17:15 – 17:30 | Selected short talk #11 |
| 17:30 – 18:00 | Systems ecology of human microbiome functions: from clinical interventions to pathogenic mechanisms Paul Wilmes – University of Luxembourg, Luxembourg |
| 18:00 – 19:00 | Meet the editors |
| 19:00 – 20:30 | Dinner in EMBL Canteen |
| Time (Europe/Berlin) | Session |
|---|---|
| Session 4: Visualizing functional units and protein machines Chair: tbc | |
| 09:00 – 09:30 | Title: tbc Martin Pilhofer – ETH Zürich, Switzerland |
| 09:30 – 09:45 | Selected short talk #12 |
| 09:45 – 10:00 | Selected short talk #13 |
| 10:00 – 10:30 | Title: tbc Elisabeth Lowe – Newcastle University, UK |
| 10:30 – 11:00 | Title: tbc Xiang Gao – Shandong University, China |
| 11:00 – 11:30 | Coffee break |
| Session 5: Gene function in ecological context (communities, host, phages) Chair: tbc | |
| 11:30 – 12:00 | Title: tbc Bärbel Stecher – Technische Universität München, Germany |
| 12:00 – 12:15 | Selected short talk #14 |
| 12:15 – 12:30 | Selected short talk #15 |
| 12:30 – 13:00 | Flash talks |
| 13:00 – 14:00 | Lunch break |
| 14:00 – 16:00 | Poster session 2 (even numbers) |
| Session 5: Gene function in ecological context (communities, host, phages) Chair: tbc | |
| 16:00 – 16:30 | Title: tbc Justin & Erica Sonnenburg – Stanford University, USA |
| 16:30 – 16:45 | Selected short talk #16 |
| 16:45 – 17:00 | Selected short talk #17 |
| 17:00 – 17:30 | Social interactions in gut microbiota communities Karina Xavier – GIMM, Portugal |
| 17:30 – 18:00 | Coffee break |
| Session 6: Looking outward & forward – links to other microbiomes Chair: tbc | |
| 18:00 – 18:30 | Title: tbc Jaime Huerta-Cepas – Center for Plant Biotechnology and Genomics CBGP (UPM-INIA-CSIC), Spain |
| 18:30 – 19:30 | Round table discussions – Next frontiers in tacking microbiomes functions |
| 19:30 – 21:00 | Conference dinner in the canteen |
| 21:00 – 23:59 | Conference party and poster prize announcements |
Accommodation and travel are not included in the fees — participants are expected to book and pay their own expenses.
| On-site Academia | €760 |
| On-site PhD Student | €660 |
| On-site Industry | €960 |
| On-site Journal Editors* | €250 |
*Editors from scientific journals are allowed to attend onsite at a reduced rate, but asked to contribute to the conference in return by taking part in ‘Meet the editors’ sessions or other planned activities within the programme. Please contact Name of CO to ask for the special registration link for editors.
| Virtual Academia | €240 |
| Virtual PhD Student | €190 |
| Virtual Industry | €290 |
Note: accredited journalists may be eligible to register for complimentary on-site or virtual press registration. Registrants may be required to provide accreditation or equivalent proof of press membership after registration. Please contact Name of CO for more information.
Registration will be on a first come, first served basis. You can register and submit your abstract without paying the conference fee in advance but your place can only be confirmed after payment of the registration fee.
If you are added to our waiting list, please consider taking advantage of our offerings to participate virtually.
On-site participants: types of payments accepted are international bank transfers and credit card payments.
Virtual participants: we are only able to accept card payments. In exceptional cases we can accept bank transfers. Please contact events@embl.de for details.
If you are no longer able to take part in the conference, please inform your conference contact responsible for this event. Your registration and the submitted abstract will be deleted.
Please also check our Terms and Conditions for the cancellation policy.
Only participants registering to attend the on-site event are eligible to submit an abstract and participate in the poster sessions. Unfortunately, abstracts will not be accepted from virtual participants.
After registration you can submit your abstract via a separate link that will be provided in the email confirmation. Alternatively, you can access the link on the confirmation page directly after registering. The same login credentials are used for both processes.
Abstract body: the limit of 2,000 characters refers to manually typed text and excludes spaces. If an error occurs try using a different web browser (preferably Google Chrome or Mozilla Firefox).
If you copy-paste the text into the form, hidden formatting might still be included which may cause the text to exceed the 2,000 character limit resulting in an error message. We recommend you clear all formatting before pasting in the text.
If you have special symbols in your text, make sure you are using Unicode characters, otherwise these will not be recognised.
Title: the title should not exceed 20 words. Only the first word of the title should start with a capital letter and the rest should be lowercase.
Authors and affiliations: fill in the author’s details as requested in the online form. The compulsory fields are: First Name, Last Name, Organisation Name (Affiliation or Company), Country, and Email.
Kindly mark only one author in the role of First Author and please don’t forget to indicate who will be the Presenter.
Please enter your co-authors correctly via the system by adding accounts together with their organisation/institute. Do not copy-paste them into the body of the abstract text, as they will not be indexed in the abstract book.
Presentation types: when submitting your abstract, you can apply for an oral or poster presentation. A selection process will take place with the results announced 3 weeks after the abstract submission deadline (delays might occur).
For detailed instructions on how to submit a conference abstract, follow the instructions provided in this video.
Please check our FAQs pages for further information on how to submit an abstract.
Limited financial assistance is provided by the EMBL Advanced Training Centre Corporate Partnership Programme in the form of registration fee waivers, travel grants, and childcare grants.
Your place in the meeting is only confirmed by paying the registration fee, which is mandatory even when receiving a fee waiver.
The fee waiver will cover the registration sum that you have paid to attend the conference.
The travel grant will cover the cost of travel to an on-site event (airfare, train, bus, taxi, accommodation, and visa) and is provided up to specified caps which are normally as follows:
The organisers may reduce the grant cap to accommodate more participants. Recipients will be notified of their travel cap amount when they are informed of the outcome of their application.
Receipts (and boarding passes for air travel) must be provided via email with your signature for all costs incurred within two months of completion of travel.
There is the possibility to apply for a childcare grant to offset child care costs incurred by participants, speakers, and organisers when attending a conference.
Eligible costs include (but are not limited to) fees for a babysitter or childcare facility, and travel costs for a caregiver. Please note that priority will be given to early stage researchers. You may apply for a childcare grant at the same time when submitting your abstract. There is a limited amount of funding available for the childcare grants and funds will be distributed amongst eligible applicants.
You may apply for financial assistance when submitting your abstract. In your application you will be asked to answer questions regarding why your lab cannot fund your attendance and how your attendance will make a difference to your career. Application for financial support will not affect the outcome of your registration application.
If you are attending virtually, you can apply for financial assistance in the submission portal by the abstract deadline. Read the instructions on how to apply for financial assistance. Only submissions for financial assistance will be accepted. Presentation abstracts cannot be submitted here and will be declined.
In your application you will be asked to summarise your current work, answer questions regarding why your lab cannot fund your attendance, and how your attendance will make a difference to your career. Application for financial support will not affect the outcome of your registration application.
The scientific organisers will select the recipients of grant allocations during the abstract selection process. The allocations will be announced after the abstract selection results.
Allocation results do not impact your admission to the meeting. Selection for financial assistance is based on scientific merit, your current work or study location, the reasons for needing financial support, and the impact this event will have on your career.
Please note that for childcare grants, priority will be given to early-stage researchers.
Costs will be reimbursed after the meeting only once a reimbursement form and original receipts (from travel costs) have been received.
View our list of external funding opportunities or refer to the FAQ page.
The selection process will take place with the results announced by email to all applicants / submitters. We aim to announce 3 weeks (21 days) after the abstract submission deadline but delays may occur.
At our conferences we also offer the option to become an event reporter. By attending the meeting, sharing your insights on social media, and writing a summary report, you can offset the conference fees. Please read the instructions on how to apply.
We can send you a registration confirmation to support your visa procedure (not an official invitation letter) after you have paid the registration fee. Please contact the Conference Officer responsible for your event. Read our FAQ for more information.
If you are travelling to Heidelberg via aeroplane, train, car, or long-distance bus, you can find useful information on our travel information page.
Accommodation is not included in the conference registration fee.
As changes in our events are possible, it is recommended that you book flights, trains, and hotels with flexible options and favourable cancellation conditions.
Invited speakers please be wary of fraudulent ‘hotel services’ contacting you to ask for payments, see our Accommodation Scam Alert for more information.
The hotels below have rooms on hold for participants until Monday, 9 November 2026, in some cases at special rates. Please email the hotel directly, quoting the booking code GMD26-01 to confirm the exact price of the room.
| Aparthotel Adagio Heidelberg Click to contact the hotel directly | Hotel Holländer Hof Click to contact the hotel directly | Meininger Heidelberg Click to contact the hotel directly (use code: EMBL2026) |
| Hotel Anlage Click to contact the hotel directly | Hotel ibis Heidelberg Click to contact the hotel directly | Premier Inn Heidelberg City Zentrum Click to contact the hotel directly |
| Hotel Bayrischer Hof Click to contact the hotel directly | InterCity Hotel Heidelberg Click to contact the hotel directly | Staycity Aparthotel Heidelberg Click to contact the hotel directly |
| B&B Hotel Click to contact the hotel directly | ISG Hotel Click to contact the hotel directly | Steffi’s Hostel Heidelberg Click here to contact the hotel directly |
| The Heidelberg Exzellenz Hotel Click to contact the hotel directly | Leonardo Hotel Heidelberg City Centre Click to contact the hotel directly | Hotel Vier Jahreszeiten Heidelberg Click to contact the hotel directly |
| Hilton Heidelberg Click to contact the hotel directly | Lotte The Backpackers Click to contact the hostel directly |
Please note that as of 1 October 2025, Heidelberg City Council is introducing an overnight stay tax for tourists visiting Heidelberg (including work related trips). The cost will be 3.50 EUR per night for the first five nights of a consecutive stay and will be added to the hotel’s nightly rate. Please contact the individual hotel directly if you have any questions.
These buses are free of charge for participants and depart from designated bus stops near the hotels to EMBL and back, mornings and evenings.
The bus stops for this conference are:
View Conference shuttle bus stops and hotels in a larger map. Please note that some bus stops may not be used for this event.
In addition to the shuttle busses, there is also the public bus 28 that serves the EMBL campus and taxis can be easily booked at any time. For more information, please refer to the local transportation (RNV) website.
Address: EMBL, Meyerhofstraße 1, 69117 Heidelberg, Germany.
For more information about travel and accommodation, please refer to the FAQ page.
Here you will find useful information for when you are onsite at the event.
All meals and coffee breaks as indicated in the programme are included in the registration fee. Our catering staff will prepare a variety of vegetarian meals, meat and fish dishes, soups, pasta, fresh fruit and vegetables, as well as a variety of desserts.
Please wear your badge at all times when serving yourself.
No food or drinks are allowed in the auditorium.
Wi-Fi is available on campus using the EMBL-Events network and the event specific password, which will be provided on site. The eduroam network (secure, worldwide roaming access service developed for the international research and education community) is also available.
During the conference, an EMBL Photographer may be taking photos. If you would not like to appear in these, please inform the photographer or at someone the registration desk.
There are lockers available next to the stairs leading down into the Auditorium. You will find some of those equipped with sockets to charge your electronic devices.
In most places the electricity is 220 volts AC (50 cycles). An adaptor and a plug that fits the German socket may be needed for your appliances. A USB charging station for electronic devices is available at the registration desk.
We can help to print your boarding pass/train ticket. Please send it to events@embl.de and collect your printouts at the registration desk.
There are lockers available on-site to store your luggage, which require a 2 EURO coin to operate. There is another luggage room on level E0, which is free to use but remains unlocked during the conference.
Lost and found items are kept at the registration desk until the end of the conference.
There is a nursing room available in the ATC Rooftop Lounge on level A29.
There is a room for prayer, yoga, and meditation, located on level E0 behind the Auditorium. Please be respectful of others using the room.

Please take a moment to read our health and safety policy.
The Heidelberg University Hospital or ‘Universitätsklinikum‘ has a 24 hour accident and emergency facility and is at ‘Im Neuenheimer Feld 672’. It is a 8 km or a 20 minute taxi ride away from EMBL. In a medical emergency, the ambulance service generally transports patients to this hospital.
Please remember to bring your own medication. Note that the next pharmacy is a 4 minute drive from the EMBL, but for many medications you need a prescription.
Ensure in advance that your medical insurance will cover you during your visit in the event that you do need to see a doctor while in Heidelberg.
The EMBL course and conference office team are able to advise you on where to turn for emergency or non-emergency medical treatment in Heidelberg and can assist you in making appointments and/or arranging transport to get to the pharmacy or a doctor of your choice if necessary. Please note, we are not however permitted to personally accompany you off-campus.
A variety of activities in Heidelberg can be found on the website of Heidelberg Marketing.
Access to the event platform is given to all on-site and virtual participants.
You can use the event platform to:
More information about the platform will be shared ahead of the conference.
Additional information can be found in our Code of Conduct.
The programme is planned based on the Europe/Berlin time zone, unless otherwise stated. Please take your time zone into consideration when planning your attendance.
Please find additional information including FAQs, terms and conditions, and travelling to EMBL on our Information for participants page.
Media partners
Cancer Drug Resistance, an OAE Publishing Inc. journal
Disease Models & Mechanisms, a The Company of Biologists journal
Medinformatics, a Bon View Publishing journal
Molecular Systems Biology, an EMBO Press journal
Open Biology, a Royal Society journal
Synthetic Biology and Engineering, a Sciepublish journal
We offer a variety of event sponsoring possibilities, with the flexibility to select a set sponsorship package or combine individual sponsorship options to suit your event budget. Discounts are available for companies sponsoring multiple events at EMBL Heidelberg. View other conferences, or contact sponsorship@embl.org for further information on sponsoring possibilities.
If you are interested in becoming a media partner of this event, please visit our media partnerships webpage.
EMBL wishes to warn sponsors of EMBL conferences and courses of fraudulent schemes purporting to offer sponsorship opportunities on behalf of EMBL or affiliated with EMBL officials. One current scam campaign of which we are aware is conducted using the name ‘Judy Eastman’ (judy@gopcontact.a2hosted.com) and entails approaches to sponsors offering sponsorship opportunities on EMBL’s behalf. Please be kindly advised that all relevant communication regarding sponsorship of EMBL conferences, symposia and courses is handled by EMBL directly and is sent from an official EMBL account. EMBL does not work with any external providers on sponsorship acquisition.
Please also note that:
Suspicious communications purportedly from, for or on behalf of EMBL should be reported to EMBL at the following email address sponsorship@embl.de.
Want to let others know you’re attending this event? Take a look at our shareable media and feel free to use them in your social media channels or presentations.
Date: 8 - 10 Dec 2026
Location: EMBL Heidelberg and Virtual
Venue: EMBL Advanced Training Centre
Deadline(s):
Abstract submission: 15 Sep 2026
Registration (On-site): 27 Oct 2026
Registration (Virtual): 1 Dec 2026
Organisers:
Contact: Sophie Dutzi