Jochen Behrends
Research Center Borstel
Germany
EMBO Practical Course
Flow cytometry-based cell sorting remains a cornerstone technique across many areas of life science research. As access to high-end sorters increases, researchers are often expected to operate these instruments with minimal institutional support or formal training – particularly in settings lacking dedicated core facilities. Yet, understanding the principles behind cell sorting is crucial for designing effective experiments, troubleshooting issues, and generating high-quality, publishable data.
This practical course addresses that need by offering a comprehensive programme that blends theoretical foundations with hands-on experience. Delivered by leading experts, it provides in-depth instruction on established best practices while also introducing participants to the latest advancements in the field, including spectral and image-enabled cell sorting. Now a well-established programme, the course is continuously refined to reflect technological advancements and the evolving needs of the research community. Each edition incorporates participant feedback and introduces emerging topics – such as spectral and image-enabled sorting, data reproducibility, and downstream applications. For example, image-enabled cell sorting, to which our team has directly contributed (Schraivogel et al. 2022), is now a key part of the programme. This dynamic and responsive approach ensures that the course remains current, relevant, and impactful for researchers working with advanced cytometry technologies.
This course is ideal for researchers at any stage who want to build confidence and expertise in cell sorting. Participants with a solid foundation in flow cytometry and hands-on experience using flow cytometers in their daily work will gain the most from the advanced, practice-oriented content.
By the end of the course, participants will have a strong understanding of the fundamental principles that underpin high-quality cell sorting, including experimental design, panel setup, controls, validation, and quality assessment. Through practical sessions on the BD FACSAria Fusion and BD FACSDiscover S8, they will learn how to translate these principles into practice, interpret sorting outcomes, and troubleshoot common challenges. Participants will also gain insight into advanced developments such as spectral and image-enabled sorting, helping them to apply modern best practices confidently in their own research.
This course is kindly supported by the core facility Flow Cytometry and DKFZ.
“This course provides an exceptional hands-on experience with the latest techniques in flow cytometry. The expert-led sessions and collaborative environment make it an invaluable resource for expanding practical skills and fostering connections in the field of cell and particle sorting.” – Indrė Dalgėdienė, Vilnius University Life Sciences Center, Lithuania
“Everybody who does cell sorting should take part in this course. I learned so much that helped me improve my experiments and guided me toward solving my problems. If I succeed in my experiments, it is in large part due to this course.” – Veronika Pfaffenstaller, Biomedical Center Munich at the LMU, Germany
“I had high expectations for this course on the Fundamentals of high-end cell sorting. But my expectations were widely surpassed! I have learnt so much during this week, including things that I thought I was almost an expert in. I can’t wait to go back to the lab and apply everything I learnt! I do recommend this course for anyone planning to do cell sorting!” – Luís Crisóstomo, University of Turku, Finland
Research Center Borstel
Germany
EMBL Heidelberg
Germany
Novo Nordisk Foundation Center for Stem Cell Medicine – reNEW
Denmark
Derek Davies Cytometry
United Kingdom
BD
Switzerland
University Zurich
Switzerland
EMBL Heidelberg
Germany
TU Dresden
Germany
Babraham Institute
United Kingdom
ETH Zurich
Switzerland
BIH Charite Berlin
Germany
Aarhus University
Denmark
EMBL Heidelberg
Germany
DKFZ
Germany
EMBL Heidelberg
Germany
University Zurich
Switzerland
EMBL Heidelberg
Germany
DKFZ
Germany
EMBL Heidelberg
Germany
Are you on social media? Post using #EMBOCellSort and don’t forget to tag @EMBLEvents.
The course is limited to 16 participants. For selection purposes, please note that your application will not be considered without a letter of motivation.
Your registration for the event includes:
| Academia | €500 |
| PhD Student | €500 |
| Industry | €1100 |
The registration fee should be paid only after acceptance to the course. The results will be announced approximately 3 weeks after the application deadline.
If you are no longer able to take part in the course, please inform your course contact responsible for this event. Your registration and the submitted motivation letter will be deleted.
Please also check our Terms and Conditions for the cancellation policy.
After you have logged in and successfully registered, you will receive an email asking you to submit your motivation letter. Click on the link provided and enter your motivation letter in the text box provided. Alternatively you can submit your motivation letter by clicking on the link on the confirmation page directly after registering.
Instructions
Please note:
For detailed instructions, please watch our video on how to submit a course motivation letter.
For further information about registration and motivation letter submission please refer to the FAQ page.
Limited financial assistance is provided by the EMBL Advanced Training Centre Corporate Partnership Programme and EMBO in the form of travel grants and childcare grants.
Your place in the meeting is only confirmed by paying the registration fee, which is mandatory even when receiving a fee waiver.
The travel grant will cover the cost of travel (airfare, train, bus, taxi, and visa) and/or registration fees and is provided up to specified caps which are normally as follows:
– up to €500 for any participant travelling to an EMBO Practical Course.
– up to €1000 for any participant working in Chile, India, Singapore or Taiwan travelling to an EMBO Practical Course.
The organisers may reduce the grant cap to accommodate more participants. Recipients will be notified of their travel cap amount when they are informed of the outcome of their application. Original receipts must be provided with your signature for all costs incurred within two months of completion of travel. Scanned copies cannot be accepted.
There is the possibility to apply for a childcare grant to offset child care costs incurred by participants, speakers, trainers and organisers when attending a course. Eligible costs include (but are not limited to) fees for a babysitter or child-care facility and travel costs for a caregiver. Please note that priority will be given to early-stage researchers. There is a limited amount of funding available for the childcare grants and funds will be distributed amongst eligible applicants.
This grant covers costs related to your attendance to the course (registration, travel and accommodation costs). The grant is restricted to PhD students and postdocs who conduct basic biomedical research.
Whether you are eligible to apply for a travel grant, depends on when you received your university entrance qualification (e.g. Abitur, A-Levels, High School Diploma, Final State Examination):
– for PhD and MD students, as well as graduates, the university entrance qualification must not have been obtained more than 11 years ago at the time of the envisaged course
– for postdocs, the university entrance qualification must not have been obtained more than 13 years ago at the time of the envisaged course
For EMBO Practical Course participants with accessibility needs, there is the possibility to apply for an accessibility grant to offset costs incurred by participants or speakers when participating at a course. Eligible costs include costs incurred for equipment or adaptations to the course environment, or travel costs for an event companion to assist the participant or speaker during the course where necessary, etc. While we do our best to accommodate needs, please note that extensive changes to the course environment might not be possible.
Please note that priority will be given to early-stage researchers. A maximum amount of €500 can be awarded per participant applying for an EMBO accessibility grant. In order to apply for this grant for EMBO Courses, you must be registered by the application deadline.
If you are attending virtually, you can apply for financial assistance in the submission portal by the abstract deadline. Read the instructions on how to apply for financial assistance. Only submissions for financial assistance will be accepted. Presentation abstracts cannot be submitted here and will be declined.
In your application you will be asked to summarise your current work, answer questions regarding why your lab cannot fund your attendance, and how your attendance will make a difference to your career. Application for financial support will not affect the outcome of your registration application.
*For some events, applications for Childcare Grants will still be done by email. Information about the grant will be sent out shortly after the abstract/motivation letter deadline. Please contact the Course Officer if you have any questions.
A selection process will take place with the results announced by email to all applicants / submitters. We aim to announce 3 weeks (21 days) after the abstract submission deadline but delays may occur.
Selection for registration fee waivers and travel grants is based on scientific merit, your current work or study location, the reasons for needing financial support, and the impact this event will have on your career.
Childcare grants will be allocated in the same timeframe (6-8 weeks before the event start date). Please note that priority will be given to early-stage researchers.
Check out this list of external funding opportunities.
For further information about financial assistance please refer to the FAQ page.
We can send you a registration confirmation to support your visa procedure (not an official invitation letter). Please contact the Course Officer responsible for your event. Read our FAQ for more information.
If you are travelling to Heidelberg via aeroplane, train, car or long-distance bus, you can find useful information on our travel information page.
Accommodation in twin rooms, including breakfast is included in the registration fee. Accommodation will be booked for the selected participants at the ISG Hotel for the default dates of Sunday, 25 October 2026 to Friday, 30 October 2026 (5 nights).
In case you would like to have a single room, please let the hotel know and please note that you will be required to pay an additional surcharge per night (availability of single rooms is limited). This should be paid by you directly to the ISG Hotel during your stay.
We recommend that all course participants stay at the ISG Hotel for the course.
Shuttle buses will go from the ISG Hotel to EMBL and back, mornings and evenings. A bus schedule will be made available prior to the meeting.
If you decide to stay at another hotel we can not provide transportation for you.
In addition to the shuttle busses, there is also the public bus 28 that serves the EMBL campus and taxis can be easily booked at any time. For more information, please refer to the local transportation (RNV) website.
You may also walk from the ISG Hotel to EMBL (takes up to 30 minutes).
Map to walk from ISG Hotel to EMBL
Address: EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany
For more information about accommodation and travel, please refer to the FAQ page.
Here you will find useful information for when you are onsite at the event.
All meals and coffee breaks are included in the registration fee. Our catering staff will prepare a variety of vegetarian meals, meat and fish dishes, soups, pasta, fresh fruit and vegetables, as well as a variety of desserts.
Please wear your badge at all times when serving yourself.
Wi-Fi is available on campus using the EMBL-Events network and the event specific password, which will be provided on site. The eduroam network (secure, worldwide roaming access service developed for the international research and education community) is also available.
During the course, an EMBL Photographer may be taking photos. If you would not like to appear in these, please inform the photographer or a member of the Course and Conference Office.
There are lockers available next to the stairs leading down into the Auditorium. You will find some of those equipped with sockets to charge your smartphone/tablet etc.
In most places the electricity is 220 volts AC (50 cycles). An adaptor and a plug that fits the German socket may be needed for your appliances/laptop (i.e. American, Japanese, etc.). A USB charging station for electronic devices is available at the registration desk.
We can help to print your boarding pass/train ticket. Please send it to events@embl.de and collect your print-outs at the registration desk.
There are lockers available on-site to store your luggage, which require a 2 EURO coin to operate. There is another luggage room on level E0, which is free to use but remains unlocked during the conference.
‘’Lost and Found’’ items are kept at the registration desk until the end of the conference.
If you are interested in purchasing EMBL merchandise (products presented in the glass display in the registration area), please email the EMBL shop to place an order.
Kindly note the EMBL shop is only open upon request and all purchases must be made in cash (Euros only).
There is a nursing room available in the ATC Rooftop Lounge on level A29.
There is a room for prayer, yoga, and meditation, located on level E0 behind the Auditorium. Please be respectful of others using the room.

Please take a moment to read our health and safety policy.
If first aid is required
In case of fire
Beyond first aid
The Heidelberg University Hospital or ‘Universitätsklinikum‘ has a 24 hour accident and emergency facility and is at ‘Im Neuenheimer Feld 672’. It is a 8km or a 20 minute taxi ride away from EMBL. In a medical emergency, the ambulance service generally transports patients to this hospital.
Please remember to bring your own medication, if needed, to the course. Note that the next pharmacy is a 4-minute drive from the EMBL, but for many medications you will be required to see a doctor to get a prescription.
Ensure in advance that your medical insurance will cover you during your visit in the event that you do need to see a doctor while in Heidelberg.
The EMBL course and conference office team are able to advise you on where to turn for emergency or non-emergency medical treatment in Heidelberg and can assist you in making appointments and / or arranging transport to get to the pharmacy or a doctor of your choice if necessary. Please note, we are not however permitted to personally accompany you off-campus.
A variety of activities in Heidelberg can be found on the website of Heidelberg Marketing.
The EMBL eCampus learning platform will be used to collaborate, communicate and network with all of the course participants. All participants will receive information on how to join shortly before the course. We recommend using Chrome, Safari or Mozilla Firefox browsers for eCampus.
Please find additional information including FAQs and terms and conditions on our Information for Participants page.
Sponsorship opportunities
We offer a variety of event sponsoring possibilities, with the flexibility to select a set sponsorship package or combine individual sponsorship options to suit your event budget. Discounts are available for companies sponsoring multiple events at EMBL Heidelberg. View other conferences, or contact sponsorship@embl.org. for further information.
If you are interested in becoming a media partner of this event, please visit our media partnerships webpage.
EMBL wishes to warn sponsors of EMBL conferences and courses of fraudulent schemes purporting to offer sponsorship opportunities on behalf of EMBL or affiliated with EMBL officials. One current scam campaign of which we are aware is conducted using the name ‘Judy Eastman’ (judy@gopcontact.a2hosted.com) and entails approaches to sponsors offering sponsorship opportunities on EMBL’s behalf. Please be kindly advised that all relevant communication regarding sponsorship of EMBL conferences, symposia and courses is handled by EMBL directly and is sent from an official EMBL account. EMBL does not work with any external providers on sponsorship acquisition.
Please also note that:
Suspicious communications purportedly from, for or on behalf of EMBL should be reported to EMBL at the following email address sponsoring@embl.de.
Want to let others know you’re attending this event? Take a look at our shareable media and feel free to use them in your social media channels or presentations.
Date: 26 - 30 Oct 2026
Location: EMBL Heidelberg
Venue: EMBL Advanced Training Centre
Deadline(s):
Application: 15 Jun 2026
Organisers:
Contact: Karo Wolkersdorfer