A Photoswitchable HaloTag for Spatiotemporal Control of Fluorescence in Living Cells.

Walterspiel F, Ugarte-Uribe B, Weidenhausen J, Vincent M, Narayanasamy KK, Dimitriadi A, Khan AUM, Fritsch M, Müller CW, Zimmermann T, Deo C

Angewandte Chemie, 2025

doi:10.1002/ange.202424955.

RNA-binding proteins mediate the maturation of chromatin topology during differentiation.

Dehingia B, Milewska-Puchała M, Janowski M, Rafiee MR, Abbas M, Piotrowska A, Senge J, Blaut P, Walsh D, Severino J, Chaudhury D, Iqbal S, Montiel-Manriquez R, Jankowska S, Zare P, Huber W, Xu J, Casellas R, Zimmermann T, Dłotko P, Krijgsveld J, Pękowska A

Nature cell biology, 2025

doi:10.1038/s41556-025-01735-5.

MINFLUX: μs and nm precision 3D tracking of dynamic lipid mobility on nanoparticles.

Fitzpatrick LW, Woythe L, Huang Z, Schnorrenberg S, Zimmermann T, Albertazzi L

Nanoscale, 2025

doi:10.1039/d5nr00948k.

Setting up a light microscopy core facility: Facility design.

Zimmermann T

Journal of microscopy, 2024

doi:10.1111/jmi.13301.

Build and operation of a custom 3D, multicolor, single-molecule localization microscope.

Power RM, Tschanz A, Zimmermann T, Ries J

Nature protocols, 2024

doi:10.1038/s41596-024-00989-x.

CSPP1 stabilizes growing microtubule ends and damaged lattices from the luminal side.

van den Berg CM, Volkov VA, Schnorrenberg S, Huang Z, Stecker KE, Grigoriev I, Gilani S, Frikstad KM, Patzke S, Zimmermann T, Dogterom M, Akhmanova A

The Journal of cell biology, 2023

doi:10.1083/jcb.202208062.

Super-resolution microscopy of the synaptonemal complex within the Caenorhabditis elegans germline.

Čavka I, Power RM, Walsh D, Zimmermann T, Köhler S

Journal of visualized experiments : JoVE, 2022

doi:10.3791/64363.

Photobleaching and sensitized emission-based methods for the detection of Förster resonance energy transfer.

Zimmermann T

Methods in molecular biology (Clifton, N.J.), 2019

doi:10.1007/978-1-4939-9686-5_12.

Superresolution Microscopy.

Zimmermann T

2017

doi:10.1002/9780470015902.a0025317.

TANGO1 assembles into rings around COPII coats at ER exit sites.

Raote I, Ortega Bellido M, Pirozzi M, Zhang C, Melville D, Parashuraman S, Zimmermann T, Malhotra V

The Journal of cell biology, 2017

doi:10.1083/jcb.201608080.

STED imaging performance estimation by means of Fourier transform analysis.

Merino D, Mallabiabarrena A, Andilla J, Artigas D, Zimmermann T, Loza-Alvarez P

Biomedical optics express, 2017

doi:10.1364/BOE.8.002472.

Molecular interaction and cellular location of RecA and CheW proteins in Salmonella enterica during SOS response and their implication in swarming.

Irazoki O, Aranda J, Zimmermann T, Campoy S, Barbé J

Frontiers in microbiology, 2016

doi:10.3389/fmicb.2016.01560.

Compensatory cell movements confer robustness to mechanical deformation during embryonic development.

Jelier R, Kruger A, Swoger J, Zimmermann T, Lehner B

Cell systems, 2016

doi:10.1016/j.cels.2016.07.005.

Comprehensive single cell-resolution analysis of the role of chromatin regulators in early C. elegans embryogenesis.

Krüger AV, Jelier R, Dzyubachyk O, Zimmermann T, Meijering E, Lehner B

Developmental biology, 2015

doi:10.1016/j.ydbio.2014.10.014.

Clearing up the signal: spectral imaging and linear unmixing in fluorescence microscopy.

Zimmermann T, Marrison J, Hogg K, O'Toole P

Methods in molecular biology (Clifton, N.J.), 2014

doi:10.1007/978-1-60761-847-8_5.

The evolution and development of neural superposition.

Agi E, Langen M, Altschuler SJ, Wu LF, Zimmermann T, Hiesinger PR

Journal of Neurogenetics, 2014

doi:10.3109/01677063.2014.922557.

Genetically encoded sender-receiver system in 3D mammalian cell culture.

Carvalho A, Menendez DB, Senthivel VR, Zimmermann T, Diambra L, Isalan M

ACS synthetic biology, 2014

doi:10.1021/sb400053b.

Quantification of ErbB network proteins in three cell types using complementary approaches identifies cell-general and cell-type-specific signaling proteins.

Kiel C, Ebhardt HA, Burnier J, Portugal C, Sabidó E, Zimmermann T, Aebersold R, Serrano L

Journal of proteome research, 2014

doi:10.1021/pr400878x.

Engineering of weak helper interactions for high-efficiency FRET probes.

Grünberg R, Burnier JV, Ferrar T, Beltran-Sastre V, Stricher F, van der Sloot AM, Garcia-Olivas R, Mallabiabarrena A, Sanjuan X, Zimmermann T, Serrano L

Nature methods, 2013

doi:10.1038/nmeth.2625.

Grb14 is a negative regulator of CEACAM3-mediated phagocytosis of pathogenic bacteria.

Kopp K, Buntru A, Pils S, Zimmermann T, Frank R, Zumbusch A, Hauck CR

The Journal of biological chemistry, 2012

doi:10.1074/jbc.M112.395228.

Quantifying the influence of yellow fluorescent protein photoconversion on acceptor photobleaching-based fluorescence resonance energy transfer measurements.

Seitz A, Terjung S, Zimmermann T, Pepperkok R

Journal of biomedical optics, 2012

doi:10.1117/1.jbo.17.1.011010.

ADF/Cofilin regulates secretory cargo sorting at the TGN via the Ca2+ ATPase SPCA1.

von Blume J, Alleaume AM, Cantero-Recasens G, Curwin A, Carreras-Sureda A, Zimmermann T, van Galen J, Wakana Y, Valverde MA, Malhotra V

DEVELOPMENTAL CELL, 2011

doi:10.1016/j.devcel.2011.03.014.

Fluorescence resonance energy transfer (FRET)-based subcellular visualization of pathogen-induced host receptor signaling.

Buntru A, Zimmermann T, Hauck CR

BMC biology, 2009

doi:10.1186/1741-7007-7-81.

A robust and highly efficient immune cell reprogramming system.

Bussmann LH, Schubert A, Vu Manh TP, De Andres L, Desbordes SC, Parra M, Zimmermann T, Rapino F, Rodriguez-Ubreva J, Ballestar E, Graf T

Cell stem cell, 2009

doi:10.1016/j.stem.2009.10.004.

The role of GRASP55 in Golgi fragmentation and entry of cells into mitosis.

Duran JM, Kinseth M, Bossard C, Rose DW, Polishchuk R, Wu CC, Yates J, Zimmerman T, Malhotra V

Molecular biology of the cell, 2008

doi:10.1091/mbc.e07-10-0998.

Wnt induces LRP6 signalosomes and promotes dishevelled-dependent LRP6 phosphorylation.

Bilic J, Huang YL, Davidson G, Zimmermann T, Cruciat CM, Bienz M, Niehrs C

Science (New York, N.Y.), 2007

doi:10.1126/science.1137065.

Use of Autostitch for automatic stitching of microscope images.

Ma B, Zimmermann T, Rohde M, Winkelbach S, He F, Lindenmaier W, Dittmar KE

Micron (Oxford, England : 1993), 2007

doi:10.1016/j.micron.2006.07.027.

Detection and quantification of protein-microtubules interactions using green fluorescent protein photoconversion.

Brunet S, Zimmermann T, Reynaud EG, Vernos I, Karsenti E, Pepperkok R

Traffic (Copenhagen, Denmark), 2006

doi:10.1111/j.1600-0854.2006.00463.x.

Secretory cargo regulates the turnover of COPII subunits at single ER exit sites.

Forster R, Weiss M, Zimmermann T, Reynaud EG, Verissimo F, Stephens DJ, Pepperkok R

Current biology : CB, 2006

doi:10.1016/j.cub.2005.11.076.

In vivo identification of novel regulators and conserved pathways of phagocytosis in A. gambiae.

Moita LF, Wang-Sattler R, Michel K, Zimmermann T, Blandin S, Levashina EA, Kafatos FC

Immunity, 2005

doi:10.1016/j.immuni.2005.05.006.

Live cell spinning disk microscopy.

Gräf R, Rietdorf J, Zimmermann T

Advances in biochemical engineering/biotechnology, 2005

doi:10.1007/b102210.

Imaging platforms for measurement of membrane trafficking.

Pepperkok R, Simpson JC, Rietdorf J, Cetin C, Liebel U, Terjung S, Zimmermann T

Methods in enzymology, 2005

doi:10.1016/s0076-6879(05)04002-4.

Spectral imaging and linear unmixing in light microscopy.

Zimmermann T

Advances in biochemical engineering/biotechnology, 2005

doi:10.1007/b102216.

Characterization of the TPX2 domains involved in microtubule nucleation and spindle assembly in Xenopus egg extracts.

Brunet S, Sardon T, Zimmerman T, Wittmann T, Pepperkok R, Karsenti E, Vernos I

Molecular biology of the cell, 2004

doi:10.1091/mbc.e04-05-0385.

Real-time, in vivo analysis of malaria ookinete locomotion and mosquito midgut invasion.

Vlachou D, Zimmermann T, Cantera R, Janse CJ, Waters AP, Kafatos FC

Cellular microbiology, 2004

doi:10.1111/j.1462-5822.2004.00394.x.

Spectral imaging and its applications in live cell microscopy.

Zimmermann T, Rietdorf J, Pepperkok R

FEBS letters, 2003

doi:10.1016/s0014-5793(03)00521-0.

Spectral imaging and linear un-mixing enables improved FRET efficiency with a novel GFP2-YFP FRET pair.

Zimmermann T, Rietdorf J, Girod A, Georget V, Pepperkok R

FEBS letters, 2002

doi:10.1016/s0014-5793(02)03508-1.

Kinesin-dependent movement on microtubules precedes actin-based motility of vaccinia virus.

Rietdorf J, Ploubidou A, Reckmann I, Holmström A, Frischknecht F, Zettl M, Zimmermann T, Way M

Nature cell biology, 2001

doi:10.1038/ncb1101-992.

4D confocal microscopy of Dictyostelium discoideum morphogenesis and its presentation on the Internet.

Zimmermann T, Siegert F

Development genes and evolution, 1998

doi:10.1007/s004270050198.

Simultaneous detection of two GFP spectral mutants during in vivo confocal microscopy of migrating Dictyostelium cells.

Zimmermann T, Siegert F

BioTechniques, 1998

doi:10.2144/98243st06.

Modification of dispersal patterns of branched photoreceptor axons and the evolution of neural superposition.

Melzer RR, Zimmermann T, Smola U

1997

doi:10.1007/PL00000598.

Central projections of Tömösváry's organ in Lithobius forficatus (Chilopoda, Lithobiidae).

Petykó Z, Zimmermann T, Smola U, Melzer RR

Cell and tissue research, 1996

doi:10.1007/s004410050543.