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Kreshuk Group

Machine learning for bioimage analysis

Publications

Microscopy-based assay for semi-quantitative detection of SARS-CoV-2 specific antibodies in human sera: A semi-quantitative, high throughput, microscopy-based assay expands existing approaches to measure SARS-CoV-2 specific antibody levels in human sera.

Pape C, Remme R, Wolny A, Olberg S, Wolf S, Cerrone L, Cortese M, Klaus S, Lucic B, Ullrich S, Anders-Össwein M, Wolf S, Cerikan B, Neufeldt CJ, Ganter M, Schnitzler P, Merle U, Lusic M, Boulant S, Stanifer M, Bartenschlager R, Hamprecht FA, Kreshuk A, Tischer C, Kräusslich HG, Müller B, Laketa V

BioEssays : news and reviews in molecular, cellular and developmental biology 2020

33377226. doi:10.1002/bies.202000257.

ilastik: interactive machine learning for (bio)image analysis.

Berg S, Kutra D, Kroeger T, Straehle CN, Kausler BX, Haubold C, Schiegg M, Ales J, Beier T, Rudy M, Eren K, Cervantes JI, Xu B, Beuttenmueller F, Wolny A, Koethe U, Zhang C, Kreshuk A, Hamprecht FA

Nature methods 2019

31570887. doi:10.1038/s41592-019-0582-9.

Solving large Multicut problems for connectomics via domain decomposition

Constantin Pape, Thorsten Beier, Peter Li, Viren Jain, Davi D. Bock, and Anna Kreshuk

2017

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Who Is Talking to Whom: Synaptic Partner Detection in Anisotropic Volumes of Insect Brain

Anna Kreshuk, Jan Funke, Albert Cardona, Fred A. Hamprecht

2015

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Improving 3D EM data segmentation by joint optimization over boundary evidence and biological priors

Krasowski, N, Beier, T, Knott, GW, Köthe, U, Hamprecht, FA, Kreshuk, A

2015

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Automated detection and analysis of bimodal isotope peak distributions in H/D exchange mass spectrometry using HeXicon

Kreshuk A, Stankiewicz M, Lou XH, Kirchner M, Hamprecht FA, Mayer MP

INTERNATIONAL JOURNAL OF MASS SPECTROMETRY 2011

doi:10.1016/j.ijms.2010.08.025.

Automated segmentation of synapses in 3D EM data

Kreshuk, A, Strähle, C, Sommer, C, Köthe, U, Knott, G, Hamprecht, FA

2011

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ROOT - A C++ framework for petabyte data storage, statistical analysis and visualization

Antcheva I, Ballintijn M, Bellenot B, Biskup M, Brun R, Buncic N, Canal P, Casadei D, Couet O, Fine V, Franco L, Ganis G, Gheata A, Maline DG, Goto M, Iwaszkiewicz J, Kreshuk A, Segura DM, Maunder R, Moneta L, Naumann A, Offermann E, Onuchin V, Panacek S, Rademakers F, Russo R, Tadel M

COMPUTER PHYSICS COMMUNICATIONS 2009

doi:10.1016/j.cpc.2009.08.005.

Developments in ROOT I/O and Trees

R Brun, P Canal, M Frank, A Kreshuk, S Linev, P Russo and F Rademakers

2008

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ROOT Statistical Software

Moneta L, Antcheva I, Brun R, and Kreshuk A

2007

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Statistics in ROOT

René Brun, Anna Kreshuk, Lorenzo Moneta

2006

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