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IMAGINE

Next generation imaging for biology across scales

IMAGINE will provide technologies to probe structure and function of biological specimens in their natural context

Where are we at?

IMAGINE passed the first reporting period with “Satisfactory” observation from the European Commission. On May 2024, the second period has begun and the Technology Validation WPs have been officially started.

Fully commit to the FAIR principles, IMAGINE shares and updates its outcomes (deliverables, publication and other documents) through this page.

Datasets

E. coli 70S ribosome in situ structure for xenon damage layer determination: 15 – 20 nm

E. coli 70S ribosome in situ structure for xenon damage layer determination: 10 – 15 nm

E. coli 70S ribosome in situ structure for xenon damage layer determination: 5 – 10 nm

E. coli 70S ribosome in situ structure for xenon damage layer determination: 40 – 45 nm

E. coli 70S ribosome in situ structure for xenon damage layer determination: 30 – 35 nm

E. coli 70S ribosome in situ structure for xenon damage layer determination: >40 nm matched control for 35 – 40 nm

E. coli 70S ribosome in situ structure for xenon damage layer determination: 20 – 25 nm

E. coli 70S ribosome in situ structure for xenon damage layer determination: 10,000 particles (no depth constraint)

E. coli 70S ribosome in situ structure for xenon damage layer determination: >35 nm matched control for 30 – 35 nm

E. coli 70S ribosome in situ structure for xenon damage layer determination: 25 – 30 nm

E. coli 70S ribosome in situ structure for xenon damage layer determination: 10,000 particles (<30 nm)

E. coli 70S ribosome in situ structure for xenon damage layer determination: >60 nm matched control for 55 – 60 nm

E. coli 70S ribosome in situ structure for lamellae backside damage analysis: 4 – 5 microns from lamellae backside

E. coli 70S ribosome in situ structure for lamellae backside damage analysis: 1 – 2 microns from lamellae backside

E. coli 70S ribosome in situ structure for xenon damage layer determination: >55 nm matched control for 50 – 55 nm

E. coli 70S ribosome in situ structure for xenon damage layer determination: 45 – 50 nm

E. coli 70S ribosome in situ structure for xenon damage layer determination: >30 nm matched control for 25 – 30 nm

E. coli 70S ribosome in situ structure for xenon damage layer determination: >25 nm matched control for 20 – 25 nm

C. elegans L1 larva 80S ribosome class 1

Focused refinment of 11-protofilament microtubule from C. elegans

Tomogram of the nucleus of a C. elegans L1 larva

Cryo serial FIB/SEM of Vero cells 

Cryo electron tomography on xenon plasma FIB lamellae of high-pressure frozen E. coli

Interleaved scanning electron microscopy: exploring native samples at the mesoscale. E.gracilis

Interleaved scanning electron microscopy: exploring native samples at the mesoscale. Adult mouse brain

Cryo serial FIB/SEM of Rhodospirillum rubrum [43 micrographs in TIFF format]

Cryo serial FIB/SEM of HeLa cells [46 micrographs in TIFF format]

Comprehensive semi-supervised automated annotations of macromolecules and organelles in C. reinhardtii tomograms

Deliverables

D13.1: Project Management

The purpose of this deliverable is to present a basic overview of the project management of the IMAGINE project that will be implemented across the consortium members. The project management standards were created in order to form a transparent, efficient, and effective coordination across all work packages.

D13.2: Data Management Plan

The IMAGINE project DMP has been developed by Work Package 13 on Project Management and Outreach, which is an integral part of the governance structure, and oversees the quality assurance of the project outcomes. This is version 0.1 of the IMAGINE Data Management Plan (DMP) has been developed in consultation with Work Package 6 on AI-based image analysis across scales, and is delivered in month 6 of the project. It encompasses how IMAGINE will organise, manage, distribute and disseminate the data that are generated and used during the project. This project DMP follows the European Commission’s Horizon Europe Data Management Template version 1.0 (published on 5 May 2021). It is a live document that will be reviewed and updated periodically during the project to ensure it remains up to date.

D13.3: IMAGINE Homepage

The purpose of this deliverable is to present the implementation of publishing the new official homepage of IMAGINE project and to introduce the dissemination plan through the homepage. This deliverable focuses on brief information about the general structure of the homepage and the communication plan for the homepage.

D13.6: Plan for Dissemination and Exploitation including Communication Activities

This IMAGINE project deliverable has been developed by Work Package 13 on Project Management and Outreach, which is an integral part of the governance structure, and oversees the quality assurance of the project outcomes. Together with D13.1 Project Management, D13.2. Data Management Plan, and D13.3 IMAGINE Homepage, this deliverable encompasses how IMAGINE outcome will be shared, published, and targeted to IMAGINE’s stakeholders. This deliverable was written following the Annotated Grant Agreement by the European Commission dated 01 April 2023. As a mandatory deliverable, IMAGINE covers all plans including the activities that have been executed after the start of the project.

D13.7: Policy Brief

This deliverable is an obligatory deliverable following the Annotated Grant Agreement by the European Commission dated 01 April 2023. This deliverable will be updated every reporting period.

Others

Brand Guidelines

Introductory Poster

Contact us

imagine-contact@embl.org

This project is funded by the European Union (GA#101094250). Views and opinions expressed are however those of the authors only and do not necessarily reflect those of the European Union. Neither the European Union nor the granting authority can be held responsible for them. 

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