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Time-resolved macromolecular serial crystallography – Course and Conference Office

EMBO Practical Course

Time-resolved macromolecular serial crystallography

Overview

Registration is not yet open for this event. If you are interested in receiving more information please register your interest.

Funded by EMBO for excellence in the life sciences.

Course overview

Time-resolved macromolecular serial crystallography has become increasingly accessible in recent years thanks to the availability of XFELs and dedicated synchrotron beamlines for serial crystallography, especially in Europe. This range of X-ray sources, as well as advances in sample delivery methods and data processing now allow time-resolved crystallography experiments over 15 orders of magnitude (from fs-s) which investigate the atomic details of the biochemical reactions that are crucial for life. The data we can now obtain provide the fundamental basis for next generation drug discovery, biotechnology, and medicine.


However, despite the widening availability of the needed infrastructure for these experiments, the successful design, execution, and analysis of time-resolved serial crystallography experiments requires in-depth understanding of a multi-disciplinary experimental setup and skills well beyond those taught in standard crystallographic training programmes. Therefore, to ensure that these emerging scientific possibilities are exploited efficiently, it is crucial to offer appropriate training to the next generation of scientists. This course aims to address exactly this gap, and follows a successful first edition in 2024; which happened in Grenoble. After attending this course, participants will be able to design and successfully perform time-resolved serial crystallography experiments relevant for their own scientific projects.

Audience

The course is aimed at advanced PhD students and early-career scientists, working in X-ray crystallography, who have prior acquaintance of serial crystallography and willing to pursue projects requiring enzymatic reaction studies. Moreover, participants should clearly provide or show a direct intent of applying time-resolved serial crystallography to their research projects. In selecting participants, we look for scientific merits in presenting their motivation, immediate application of the methods learned, strong background in understanding various aspects of crystallography basics and of studying enzymatic reactions. As the course is to introduce participants to the forefront of structural biology, big data analysis will be extensively carried out. This would require background in basic programming or ability to use Linux command lines.

Modules/resources

  • Micro-crystallization strategies for – soluble and membrane proteins
  • Time-resolved in-crystallo spectroscopy to study reaction kinetics
  • Tricks to run an injector-based sample delivery for serial crystallography experiments
  • Fixed-target serial crystallography experiments
  • Hands-on experience on serial crystallography measurement at ID29 beamline
  • Serial crystallography data analysis using latest softwares
  • Time-resolved data interpretation using real-life cases

Learning outcomes

Participants should be able to apply what they have learned to their own projects. For each module, the participants will learn the theoretical and practical aspects of latest developments in the field. After the course, they will confidently be able to conduct a time-resolved experiment to study enzymatic reactions

Participant commitment

There will be an onboarding session (a few weeks ahead of the course), which will bring everyone to a good starting position for the course. 

Full-time attendance is required for the course duration.

What past participants say about the course

“The course clarified several scientific gaps in the serial crystallography field. I feel much more confident and secure to design experiments and discuss the technique requirements.” – Hevila Brognaro, University of Hamburg, Germany

Speakers

Speakers, trainers, and staf

Shibom Basu

EMBL Grenoble

France

John Beale

Paul Scherrer Institute / SwissFEL

Switzerland

Gülbahar Bozan

University of Groningen

The Netherlands

Robert Bücker

Rigaku Europe

Germany

Cecilia Casadei

MAX IV

Sweden

Henry Chapman

DESY

Germany

Ashwin Chari

Max-Planck Institute, Gottingen

Germany

Daniele de Sanctis

ESRF

France

Elke de Zitter

Institut de Biologie Structurale

France

Alisia Fadini

University of Cambridge

United Kingdom

Elspeth Garman

University of Oxford

United Kingdom

Helen Ginn

University of Hamburg / DESY

Germany

Johanna Hakanpää

DESY

Germany

James Holton

Lawrence Berkeley National Laboratory / University of California San Francisco

USA

Pedram Mehrabi

University of Hamburg

Germany

Dominik Oberthuer

DESY

Germany

Arwen Pearson

University of Hamburg

Germany

Lars Redecke

University of Lubeck

Germany

Alexandra Ros

Arizona State University

USA

Claude Sauter

CNRS-IBMC

France

Robin Schubert

EuXFEL

Germany

Carolin Seuring

University of Hamburg

Germany

Andrea Thorn

University of Hamburg

Germany

Sofia Trampari

Dectris

Switzerland

David von Stetten

EMBL Hamburg

Germany

Thomas White

DESY

Germany

Briony Yorke

University of Leeds

United Kingdom

Iris Young

University of Hamburg

Germany

Nadia Zatsepin

Swinburne University, Melbourne

Australia

Scientific organisers

Shibom Basu

EMBL Grenoble

France

Cecilia Casadei

MAX IV

Sweden

Arwen Pearson

University of Hamburg

Germany

Daniele de Sanctis

ESRF

France

David von Stetten

EMBL Hamburg

Germany

Course organisers

Iva Gavran

EMBL Heidelberg

Germany

Preliminary programme

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  • Some pre-course work (such as watching pre-recordings and protocol reading) with estimated time 0-10 hours will be required and will be shared in advance of the course
  • Some speakers may need to join virtually to give their lecture or Q&A, and the programme is subject to change
  • For registered participants, recorded talks will be accessible on demand for 4 weeks after the end of the event, unless indicated otherwise

Day 1: Monday, 6 July 2026

Time (Europe/Berlin)Speaker
08:00 – 09:20Registration / Welcome coffee
09:20 – 09:30Official Welcome
Overview of the course
09:30 – 10:30Serial crystallography – brief history and scientific significance
Henry Chapman – DESY, Germany
10:30 – 11:00Coffee break
11:00 – 12:30Participant flash talks
12:30 – 13:30Lunch
13:30 – 14:30Introduction to beamlines for time-resolved serial crystallography
Daniele de Sanctis – ESRF, France
14:30 – 15:00Detectors for time-resolved serial crystallography
Sofia Trampari – Dectris, Switzerland
15:00 – 15:30Coffee break
15:30 – 16:30Signal to noise and other challenges in time-resolved serial crystallography
James Holton – Lawrence Berkeley National Laboratory / University of California San Francisco, USA
16:30 – 17:30Radiation damage in serial crystallography
Elspeth Garman – University of Oxford, United Kingdom
17:30 – 18:30Responsible conduct of research session
Discussion round

FAIR use of data & how this is practically done for serial crystallographic data
Experimental design and development of community standards for serial data quality
Sustainability in experimental design and data archiving
18:30 – 19:30Dinner
19:30 – 20:30Poster session

Day 2: Tuesday, 7 July 2026

Time (Europe/Berlin)Speaker
08:55 – 09:00Overview of the day
09:00 – 10:00Crystal quality/homogeneity/density – what is a good sample?
Ashwin Chari – Max Planck Institute for Multidisciplinary Sciences, Germany
10:00 – 10:30How to grow microcrystals
John Beale – Paul Scherrer Institute / SwissFEL, Switzerland
10:30 – 11:00In cell crystallization for serial crystallography
Lars Redecke – University of Lübeck, Germany
11:00 – 11:30Coffee break
11:30 – 12:00Protein-nucleic acid complexes
Claude Sauter – CNRS-IBMC, France
12:00 – 12:30Time-resolved crystallography using Hadamard encoding (HATRX)
Briony Yorke – University of Leeds, United Kingdom
12:30 – 13:00Serial electron diffraction
Robert Bücker – Rigaku Europe, Germany
13:00 – 14:00Lunch
14:00 – 16:00Practicals A-D in parallel (one group of 5 participants per practical; 1 h per practical)
Practical A: “Fixed target loading and time-resolved data collection using LAMA at T-REXX”
Lead trainer: David von Stetten
Practical B: “TapeDrive and time-resolved data collection at P11”
Lead trainer: Johanna Hakanpää
Practical C: “SpitRobot (HARBOR)”
Lead trainer: Pedram Mehrabi
Practical D: “Batch micro- and nano-crystallization (HARBOR)”
Lead trainer: Dominik Oberthür
16:00 – 16:30Coffee break
16:30 – 18:30Practicals A-D in parallel (one group of 5 participants per practical; 1 h per practical)
Practical A: “Fixed target loading and time-resolved data collection using LAMA at T-REXX”
Lead trainer: David von Stetten
Practical B: “TapeDrive and time-resolved data collection at P11”
Lead trainer: Johanna Hakanpää
Practical C: “SpitRobot (HARBOR)”
Lead trainer: Pedram Mehrabi
Practical D: “Batch micro- and nano-crystallization (HARBOR)”
Lead trainer: Dominik Oberthür
18:30 – 19:30Free time and travel to course dinner
19:30 – 22:30Course dinner at Fischclub Blankenese

Day 3: Wednesday, 8 July 2026

Time (Europe/Berlin)Speakers
08:55 – 09:00Overview of the day
09:00 – 10:00Best practice for time-resolved experiments
Arwen Pearson – University of Hamburg, Germany
10:00 – 11:00Mixing and microfluidics for serial crystallography
Alexandra Ros – Arizona State, USA
11:00 – 11:30Coffee break
11:30 – 12:00Fixed-target sample delivery & liquid droplets for reaction initiation (LAMA)
Pedram Mehrabi – University of Hamburg, Germany
12:00 – 12:30Photochemistry for time-resolved crystallography
Gülbahar Bozan – University of Groningen, The Netherlands
12:30 – 13:002D crystals and dynamic retrieval
Cecilia Casadei – MAX IV, Sweden
13:00 – 14:00Transfer to European XFEL & buffet lunch in XFEL foyer
14:00 – 15:30Robin Schubert: Tours and Live Demos at European XFEL
15:30 – 16:30Transfer back to SCHB & tea break
16:30 – 18:30Practicals E and F in parallel (one group of 10 participants per practical; 1 h per practical)
Practical E: Serial electron diffraction
Lead trainer: Carolin Seuring + 1 tutor
Practical F: “Crystal Controller: tracking the early stages of crystallization”
Lead trainers: Robin Schubert & Claude Sauter
18:30Free evening

Day 4: Thursday, 9 July 2026

Time (Europe/Berlin)Speaker
08:55 – 09:00Overview of the day
09:00 – 10:00Best practice for time-resolved experiments
Arwen Pearson – University of Hamburg, Germany
10:00 – 11:00Mixing and microfluidics for serial crystallography
Alexandra Ros – Arizona State, USA
11:00 – 11:30Coffee break
11:30 – 12:00Fixed-target sample delivery & liquid droplets for reaction initiation (LAMA)
Pedram Mehrabi – University of Hamburg, Germany
12:00 – 12:30Photochemistry for time-resolved crystallography
Gülbahar Bozan – University of Groningen, The Netherlands
12:30 – 13:002D crystals and dynamic retrieval
Cecilia Casadei – MAX IV, Sweden
13:00 – 14:00Transfer to European XFEL & buffet lunch in XFEL foyer
14:00 – 15:30Robin Schubert: Tours and Live Demos at European XFEL
15:30 – 16:30Transfer back to SCHB & tea break
16:30 – 18:30Practicals E and F in parallel (one group of 10 participants per practical; 1 h per practical)
Practical E: Serial electron diffraction
Lead trainer: Carolin Seuring + 1 tutor
Practical F: “Crystal Controller: tracking the early stages of crystallization”
Lead trainers: Robin Schubert & Claude Sauter
18:30Free evening

Day 5: Friday, 10 July 2026

Time (Europe/Berlin)Speaker
08:55 – 09:00Overview of the day
09:00 – 11:30Brainstorming session
Participant Groups will work together to draft a beamtime proposal for a time-resolved serial crystallographic experiment on one of their own scientific projects at either a synchrotron or XFEL
11:30 – 12:00Coffee break
12:00 – 12:15Presentation Group 1 and Feedback
12:15 – 12:30Presentation Group 2 and Feedback
12:30 – 12:45Presentation Group 3 and Feedback
12:45 – 13:00Presentation Group 4 and Feedback
13:00 – 14:00Course evaluation and closing remarks
14:00 – 14:30Packed lunch and departure

Practical information

Registration fees

The course is limited to 20 participants. For selection purposes, please note that your application will not be considered without a letter of motivation.

Registration fees

Your registration for the event includes:

  • Admission to the event
  • Meals and coffee breaks
  • Course materials
  • Access to the e-learning platform
  • A letter to support your visa application (for more information, check the ‘Travel and accommodation’ tab)
  • For this EMBO course, the fees include accommodation
Academia€500
PhD Student€500
Industry€1100

Confirmation and payment

The registration fee should be paid only after acceptance to the course. The results will be announced approximately 2-3 weeks after the application deadline.

Cancellation policy

If you are no longer able to take part in the course, please inform your course contact responsible for this event. Your registration and the submitted motivation letter will be deleted.

Please also check our Terms and Conditions for the cancellation policy.

Submitting a motivation letter

After you have logged in and successfully registered, you will receive an email asking you to submit your motivation letter. Click on the link provided and enter your motivation letter in the text box provided. Alternatively, you can submit your motivation letter by clicking on the link on the confirmation page directly after registering.

Instructions

  1. Include your relevant skills, experience and qualifications showing why you would be suitable for the course.
  2. Explain why you would like to attend, including what you can contribute and how you think you will benefit from the course.

Please note:

  • The limit of 2,000 characters refers to manually typed text and excludes spaces. If an error occurs, try using a different web browser (preferably Google Chrome or Mozilla Firefox).
  • If you copy-paste the text into the form, hidden formatting might still be included which may cause the text to exceed the 2,000 character limit resulting in an error message. We recommend you clear all formatting before pasting in the text.
  • If you have special symbols in your text, make sure you are using Unicode characters, otherwise these will not be recognised.

For detailed instructions, please watch our video on how to submit a course motivation letter.

Further details

For further information about registration and motivation letter submission please refer to the FAQ page.

Financial assistance

Financial assistance

Limited financial assistance is provided by EMBO in the form of travel grants and childcare grants

Your place in the meeting is only confirmed by paying the registration fee, which is mandatory even when receiving a fee waiver.

Travel grant

The travel grant will cover the cost of travel (airfare, train, bus, taxi, and visa) and/or registration fees and is provided up to specified caps which are normally as follows:

– up to €500 for any participant travelling to an EMBO Practical Course.

– up to €1000 for any participant working in Chile, India, Singapore or Taiwan travelling to an EMBO Practical Course.

The organisers may reduce the grant cap to accommodate more participants. Recipients will be notified of their travel cap amount when they are informed of the outcome of their application. Original receipts must be provided with your signature for all costs incurred within two months of completion of travel.

Childcare grants

There is the possibility to apply for a childcare grant to offset child care costs incurred by participants, speakers, trainers and organisers when attending a course. Eligible costs include (but are not limited to) fees for a babysitter or child-care facility and travel costs for a caregiver. Please note that priority will be given to early-stage researchers. There is a limited amount of funding available for the childcare grants and funds will be distributed amongst eligible applicants.

Boehringer Ingelheim Fonds travel grant

Applies to selected courses only. Availability will be indicated during the abstract or motivation letter submission process.

This grant covers costs related to your attendance to the course (registration, travel and accommodation costs). The grant is restricted to PhD students and postdocs who conduct basic biomedical research.
Whether you are eligible to apply for a travel grant, depends on when you received your university entrance qualification (e.g. Abitur, A-Levels, High School Diploma, Final State Examination):

– for PhD and MD students, as well as graduates, the university entrance qualification must not have been obtained more than 11 years ago at the time of the envisaged course
– for postdocs, the university entrance qualification must not have been obtained more than 13 years ago at the time of the envisaged course

EMBO Accessibility Grant

For EMBO Practical Course participants with accessibility needs, there is the possibility to apply for an accessibility grant to offset costs incurred by participants or speakers when participating at a course. Eligible costs include costs incurred for equipment or adaptations to the course environment, or travel costs for an event companion to assist the participant or speaker during the course where necessary, etc. While we do our best to accommodate needs, please note that extensive changes to the conference environment might not be possible.

Please note that priority will be given to early-stage researchers. A maximum amount of €500 can be awarded per participant applying for an EMBO accessibility grant. In order to apply for this grant for EMBO Courses, you must be registered by the application deadline. 

Application

If you are attending virtually, you can apply for financial assistance in the submission portal by the abstract deadline. Read the instructions on how to apply for financial assistance. Only submissions for financial assistance will be accepted. Presentation abstracts cannot be submitted here and will be declined. 

In your application you will be asked to summarise your current work,  answer questions regarding why your lab cannot fund your attendance, and how your attendance will make a difference to your career. Application for financial support will not affect the outcome of your registration application.

Selection

A selection process will take place with the results announced by email to all applicants / submitters. We aim to announce 3 weeks (21 days) after the abstract submission deadline but delays may occur.”

Selection results do not impact your admission to the meeting. Selection for registration fee waivers and travel grants is based on scientific merit, your current work or study location, the reasons for needing financial support, and the impact this event will have on your career.

Childcare grants will be allocated in the same timeframe (6-8 weeks before the event start date). Please note that priority will be given to early-stage researchers.

Further details

Check out this list of external funding opportunities

For further information about financial assistance please refer to the FAQ page.

Travel and accommodation

Visa

We can send you a registration confirmation to support your visa procedure (not an official invitation letter). Please contact the Conference Officer responsible for your event. Read our FAQ for more information.

Accommodation and travel

Reservations for single room accommodation at the DESY hostel have been made. Note, accommodation is included in the registration fee. The guest house is within a few minutes’ walk from the EMBL laboratories and P12 beamline.

Further information

Address: EMBL Hamburg, Notkestraße 85, Building 48e, 22607 Hamburg, Germany

From Hamburg airport take line S1 to Othmarschen (18 stops, 45 min), change to bus number 1 towards Rissen or Schenefelder Holt to Zum Hünengrab (DESY) (5 stops, 10 min).

From Hamburg-Altona train station take bus number 1 to Zum Hünengrab (DESY) (15 stops, 25 min). Ticket costs Public Transport: ca. €3.60 and a taxi will be around €45.

Technical requirements and event software

The EMBL eCampus learning platform will be used to collaborate, communicate and network with all of the course participants. All participants will receive information on how to join shortly before the course. We recommend using Chrome, Safari or Mozilla Firefox browsers for eCampus. 

Other information

While using the software during the course, please make sure you have nothing else using your bandwidth.

Additional information

Please find additional information including FAQs and terms and conditions on our Information for Participants page.

Sponsors

Sponsorship opportunities

We offer a variety of event sponsoring possibilities, with the flexibility to select a set sponsorship package or combine individual sponsorship options to suit your event budget. Discounts are available for companies sponsoring multiple events at EMBL Heidelberg. View other conferences, or contact sponsorship@embl.org. for further information.

If you are interested in becoming a media partner of this event, please visit our media partnerships webpage.

Warning

EMBL wishes to warn sponsors of EMBL conferences and courses of fraudulent schemes purporting to offer sponsorship opportunities on behalf of EMBL or affiliated with EMBL officials. One current scam campaign of which we are aware is conducted using the name ‘Judy Eastman’ (judy@gopcontact.a2hosted.com) and entails approaches to sponsors offering sponsorship opportunities on EMBL’s behalf. Please be kindly advised that all relevant communication regarding sponsorship of EMBL conferences, symposia and courses is handled by EMBL directly and is sent from an official EMBL account. EMBL does not work with any external providers on sponsorship acquisition.

Please also note that:

  • EMBL never provides attendee lists for purchase. Any offers of such are fraudulent.
  • EMBL will never call or email you to ask for your credit card details or to request a payment.
  • All payments are on invoice.

Suspicious communications purportedly from, for or on behalf of EMBL should be reported to EMBL at the following email address sponsoring@embl.de.

Date: 6 - 10 Jul 2026

Location: EMBL Hamburg

Venue: EMBL Hamburg


Organisers:

  • Shibom Basu
    EMBL Grenoble, France
    • Cecilia Casadei
      Paul Scherrer Institute, Switzerland

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