Spatial Transcriptomics Portal: Seeing gene expression in a spatial context
New portal integrates imaging and gene expression data to map gene activity across tissues.
EditCutting-edge technology, zooming in on life at the tiniest scales
Taking a photo of yourself or your surroundings has never been easier. All you need is a smartphone, tablet, or a digital camera. In order to image biological structures, a stronger magnification is usually required. Additionally, small biological structures often have to be made visible first.
Depending on the imaging technique, this can be done by attaching fluorescent reporter molecules to them, or by adding compounds to increase the contrast. For many imaging experiments to work, molecules or subcellular structures have to be fixed in space. Adding chemical glues, letting molecules form a regular crystal, or cooling down the sample to very low temperatures are the most common approaches.
Other experiments, on the contrary, require cells and molecules to be able to move around freely. This helps biologists understand how cells develop over time, how tissues form, and how proteins shuttle between different cellular compartments to perform their function.
The technology and experimental approaches in biological imaging are constantly being refined. This allows for higher resolutions, faster imaging times, better contrasts – in sum, sharper and more detailed images and videos of biological structures and processes. At EMBL, numerous researchers from multiple disciplines are involved in advancing imaging techniques.
The atomic structures of molecules are revealed at EMBL Hamburg and Grenoble, where scientists use high-energy radiation in synchrotrons, electron lasers, and X-ray beamlines to visualize crystallized proteins. At EMBL Heidelberg and Rome, electron microscopy and advanced light microscopy approaches are developed and applied. These techniques allow researchers to determine the shapes of proteins and protein complexes, follow in real-time how cellular structures change upon external stimuli, or investigate how cells develop into more complex biological structures.
The Heidelberg campus is currently expanded with a brand-new imaging facility to further foster these activities. At EMBL Barcelona, entire biological structures such as tissues and organs can be visualized through ‘mesoscopic imaging’. This unique combination of state-of-the-art imaging technologies enables researchers at EMBL to visualize biology across multiple scales.
Imaging news from EMBL’s six sites
New portal integrates imaging and gene expression data to map gene activity across tissues.
Edit
Here are seven key takeaways from an EMBL | EMBO symposium that brought together scientists from all over the world to discuss the role of AI in the life sciences.
Edit
Former EMBL group leader returns to lead the organisation’s six sites at a time of change and opportunity in life sciences.
EditEMBL facilities offering imaging services
A collection of state-of-the-art light microscopy equipment and image-processing tools.
Advanced expertise in electron microscopy, from sample preparation to image analysis, for a wide variety of biological samples.
Access to imaging platforms and support services to enable 3D imaging of biological tissues over time.
Advanced light microscopy instrumentation and sample preparation services.
Your groupHackettYour supervisorJamie HackettYour roleYou will play a central role in a pioneering an in vivo epigenome editing programme, deploying CRISPR-based epigenetic editors to modulate target gene expression in the liver. Based at EMBL and working in close collaboration with biotech partners...
Closes on 6th June. Posted 8th May 2026
EditWe are seeking to recruit a Scientist to join Nick Goldman's research group (http://www.ebi.ac.uk/research/goldman) at the European Bioinformatics Institute located on the Wellcome Genome Campus near Cambridge in the UK.The group researches the evolutionary analysis of DNA and protein sequences, gen...
Closes on 22nd May. Posted 8th May 2026
EditFrom microscopy to mycology, from development to disease modelling, EMBL researchers cover a wide range of topics in the biological sciences.