Imaging

Cutting-edge technology, zooming in on life at the tiniest scales

Taking a photo of yourself or your surroundings has never been easier. All you need is a smartphone, tablet, or a digital camera. In order to image biological structures, a stronger magnification is usually required. Additionally, small biological structures often have to be made visible first.

Zebrafish scales viewed under a scanning electron microscope
What look like sand dunes in the desert are actually muscles beneath the epidermis of a zebrafish embryo, revealed in this image from a scanning electron microscope. The epidermis is patterned by ridges, which will form the fish’s scales. (Credit: Nicole Schieber, EMBL)

Depending on the imaging technique, this can be done by attaching fluorescent reporter molecules to them, or by adding compounds to increase the contrast. For many imaging experiments to work, molecules or subcellular structures have to be fixed in space. Adding chemical glues, letting molecules form a regular crystal, or cooling down the sample to very low temperatures are the most common approaches.

Other experiments, on the contrary, require cells and molecules to be able to move around freely. This helps biologists understand how cells develop over time, how tissues form, and how proteins shuttle between different cellular compartments to perform their function.

The technology and experimental approaches in biological imaging are constantly being refined. This allows for higher resolutions, faster imaging times, better contrasts – in sum, sharper and more detailed images and videos of biological structures and processes. At EMBL, numerous researchers from multiple disciplines are involved in advancing imaging techniques.

The atomic structures of molecules are revealed at EMBL Hamburg and Grenoble, where scientists use high-energy radiation in synchrotrons, electron lasers, and X-ray beamlines to visualize crystallized proteins. At EMBL Heidelberg and Rome, electron microscopy and advanced light microscopy approaches are developed and applied. These techniques allow researchers to determine the shapes of proteins and protein complexes, follow in real-time how cellular structures change upon external stimuli, or investigate how cells develop into more complex biological structures.

The Heidelberg campus is currently expanded with a brand-new imaging facility to further foster these activities. At EMBL Barcelona, entire biological structures such as tissues and organs can be visualized through ‘mesoscopic imaging’. This unique combination of state-of-the-art imaging technologies enables researchers at EMBL to visualize biology across multiple scales.


Latest

Imaging news from EMBL’s six sites

29 Jan 2026 News image

Archaea, the ultimate survivor

Possibly the least researched microorganism domain, archaea seem to survive anywhere. Yet it is extraordinarily challenging to study and unlock their secrets of adaptability. EMBL researchers hope to …

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Facilities

EMBL facilities offering imaging services

Electron microscopy

Advanced expertise in electron microscopy, from sample preparation to image analysis, for a wide variety of biological samples.

Mesoscopic imaging

Access to imaging platforms and support services to enable 3D imaging of biological tissues over time.

Light imaging

Advanced light microscopy instrumentation and sample preparation services.


Latest jobs

Postdoc - Therapeutic Epigenetic Editing in vivo

Science, research and training in Rome, Italy

Your groupHackettYour supervisorJamie HackettYour role You will lead an in vivo epigenome editing programme focused on the delivery of epigenetic editors in mouse liver to modulate target gene expression. Based at EMBL, and working jointly with biotech partners, you will be responsible for the imple...

Closes on 12th March. Posted 11th February 2026

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Genomics Technology Infrastructure Team Leader

Technology in EMBL-EBI Hinxton

Are you interested in a leading role to shape the infrastructure and systems of one of the world’s most widely used scientific data resources? Ensembl is the leading resource for exploring and analysing genomes, used by researchers globally on a daily basis.  In recent years, Ensembl has seen a subs...

Closes on 26th March. Posted 11th February 2026

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From microscopy to mycology, from development to disease modelling, EMBL researchers cover a wide range of topics in the biological sciences.