Imaging

Cutting-edge technology, zooming in on life at the tiniest scales

Taking a photo of yourself or your surroundings has never been easier. All you need is a smartphone, tablet, or a digital camera. In order to image biological structures, a stronger magnification is usually required. Additionally, small biological structures often have to be made visible first.

Zebrafish scales viewed under a scanning electron microscope
What look like sand dunes in the desert are actually muscles beneath the epidermis of a zebrafish embryo, revealed in this image from a scanning electron microscope. The epidermis is patterned by ridges, which will form the fish’s scales. (Credit: Nicole Schieber, EMBL)

Depending on the imaging technique, this can be done by attaching fluorescent reporter molecules to them, or by adding compounds to increase the contrast. For many imaging experiments to work, molecules or subcellular structures have to be fixed in space. Adding chemical glues, letting molecules form a regular crystal, or cooling down the sample to very low temperatures are the most common approaches.

Other experiments, on the contrary, require cells and molecules to be able to move around freely. This helps biologists understand how cells develop over time, how tissues form, and how proteins shuttle between different cellular compartments to perform their function.

The technology and experimental approaches in biological imaging are constantly being refined. This allows for higher resolutions, faster imaging times, better contrasts – in sum, sharper and more detailed images and videos of biological structures and processes. At EMBL, numerous researchers from multiple disciplines are involved in advancing imaging techniques.

The atomic structures of molecules are revealed at EMBL Hamburg and Grenoble, where scientists use high-energy radiation in synchrotrons, electron lasers, and X-ray beamlines to visualize crystallized proteins. At EMBL Heidelberg and Rome, electron microscopy and advanced light microscopy approaches are developed and applied. These techniques allow researchers to determine the shapes of proteins and protein complexes, follow in real-time how cellular structures change upon external stimuli, or investigate how cells develop into more complex biological structures.

The Heidelberg campus is currently expanded with a brand-new imaging facility to further foster these activities. At EMBL Barcelona, entire biological structures such as tissues and organs can be visualized through ‘mesoscopic imaging’. This unique combination of state-of-the-art imaging technologies enables researchers at EMBL to visualize biology across multiple scales.


Latest

Imaging news from EMBL’s six sites

29 Jan 2026 News image

Archaea, the ultimate survivor

Possibly the least researched microorganism domain, archaea seem to survive anywhere. Yet it is extraordinarily challenging to study and unlock their secrets of adaptability. EMBL researchers hope to …

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28 Jan 2026 News image

Welcome: Florian Wollweber

The new EMBL Grenoble group leader will explore the origin of eukaryotes and their complex cellular organisation by studying Asgard archaea and other non-model microorganisms.

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05 Jan 2026 News image

A lab away from home

Now in its third year, EMBL’s sabbatical fellowship programme is attracting non-traditional allied scientists. The participants see opportunities for collaboration, top-notch technology, and leapfrogg…

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Facilities

EMBL facilities offering imaging services

Electron microscopy

Advanced expertise in electron microscopy, from sample preparation to image analysis, for a wide variety of biological samples.

Mesoscopic imaging

Access to imaging platforms and support services to enable 3D imaging of biological tissues over time.

Light imaging

Advanced light microscopy instrumentation and sample preparation services.


Latest jobs

AMBER Postdoctoral Fellowship: Cross-scale imaging of the invasion and progression of Toxoplasma gondii in human cells

Science, research and training in Grenoble, France

EMBL is Europe’s life sciences laboratory – an intergovernmental organisation with more than 110 independent research groups and service teams covering the spectrum of molecular biology. It operates across six sites in Heidelberg (headquarters), Barcelona, Cambridge, Grenoble, Hamburg and Rome. Our...

Closes on 3rd March. Posted 29th January 2026

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Bioinformatician MGnify

Technology in EMBL-EBI Hinxton

Your role MGnify is EMBL-EBI’s microbiome sequence data analysis resource, which performs the archiving, assembly and analysis of amplicon, metagenomic and metatranscriptomic data. Alongside the large-scale analysis of existing public microbiome datasets in ENA, we are participants in several projec...

Closes on 19th February. Posted 28th January 2026

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See more research jobs

From microscopy to mycology, from development to disease modelling, EMBL researchers cover a wide range of topics in the biological sciences.