Edith Heard
Director General
Director General
EditThe purpose of the workshop is to enhance connectivity between researchers at both, SciLifeLab and EMBL, to identify new collaboration ideas, and to promote joint technology and infrastructure resource development within Planetary Biology.
This is one of many workshops that will follow the conclusion of the MoU between SciLifeLab and EMBL in 2021.
The workshop is a hybrid event. Physical location is the EMBL Heidelberg campus, where in-person attendance is limited. Allocation of spaces is on a first-come first-served basis. Proof of COVID-19 vaccination or recovery is required for on-site attendance. Please see EMBL’s COVID-19 terms and conditions.
Please note: there are two separate registration links for on-site or virtual participation. In case you sign up for on-site participation but your availability changes, please make sure to inform the responsible contacts.
The workshop will include talks on a broad set of themes including:
As well as invited keynote speakers and panel discussions.
Day 1, Monday 16th May, 2022
13:00 | Welcome and opening remarks Edith Heard Director General of EMBL Olli Kallioniemi Director of SciLifeLab |
13:10 | Introduction and overview of Planetary Biology Detlev Arendt Planetary Biology Co-Chair, Senior Scientist, Group Leader, EMBL Olga Vinnere Pettersson & Stefan Bertilsson Co-Leads Planetary Biology Capability, SciLifeLab |
13:30 | Session 1: Biodiversity Genomics & Reference Genome Sequencing (15 mins + 5 mins Q&A per speaker in each session) Moderator Peter Harrison, Genome Analysis Team Leader, EMBL-EBI Speakers Fergal Martin, Global biodiversity efforts to sequence, assemble and annotate all eukaryotic life Kerstin Lindblad Toh (remote), Zoonomia: comparative genetics and genomics to understand genome evolution and disease Detlev Arendt, The multimodal cellular atlas of the marine annelid Platynereis dumerilii Ove Nilsson, Conifer reference genome and genetic diversity sequencing |
14:50 | Coffee break |
15:10 | Session 2: Ecology & Evolution Moderator Olga Vinnere Pettersson, Co-Lead Planetary Biology Capability, SciLifeLab Speakers Love Dalén, Studying evolutionary change in real-time using palaeogenomics Michael Dorrity, Measuring hidden phenotypes with single-cell genomics James Sharpe (remote), SYNTERRA: Studying dryland soil ecosystems in mesocosms Anna Rosling, Unearthing hidden interactions in soil |
16:30 | Keynote: Chromosomally complete genomes across the Tree of Life Mark Blaxter, Wellcome Sanger Institute |
17:15 | Coffee break |
17:30 | Closed presentation and IC tour |
18:30 | Networking opportunity (speakers, panellists, moderators, and signed up guests only) |
Day 2, Tuesday 17th May, 2022
09:00 | Arrival and Coffee |
09:30 | Keynote: Eco-evolutionary dynamics of phage-host interactions in the wild + 5mins Q&A Martin Polz, University of Vienna |
10:20 | Session 3: Biogeochemistry & Ecosystems (15 mins + 5 mins Q&A per speaker in each session) Moderator Stefan Bertilsson, Co-Lead Planetary Biology Capability, SciLifeLab Speakers Michael Zimmermann, Group Leader in Structural and Computational Biology, EMBL Sara Hallin, The nitrogen cycle as a modular network of interconnected microbial assets Flora Vincent, Viral impacts in the marine world: from single-cells to planktonic ecosystems Mark Dopson, Shining a light into the deep dark biosphere reveals core adapted microbial communities |
11:40 | Networking lunch |
12:40 | Session 4: Data-driven Planetary Biology Moderator Oliver Stegle, Associate Group Leader in Genome Biology, EMBL Speakers Tomas Roslin (remote), LIFEPLAN – a planetary synthesis of life through DNA, image and audio Peer Bork, Analysing microbes on our planet Anders Andersson, Ecology and evolution of the Baltic Sea microbiome Anna Kreshuk, Analysing all cells in a whole organism |
14:00 | Summary and Q&A |
14:15 | Coffee break |
14:45 | Panel Discussion 1: Technological Infrastructure Needs for PB Research Moderator Stefan Bertilsson, Co-Lead Planetary Biology Capability, SciLifeLab Panelists Yannick Schwab, Team Leader Volume Correlative Light and Electron Microscopy and Head of Electron Microscopy Core Facility, EMBL Timo Zimmermann, Team Leader Advanced Light Microscopy Technology Development and Service Provision, EMBL Linda Sandblad, Scientific Platform Director Cellular and Molecular Imaging, Umeå University, SciLifeLab Olga Vinnere Pettersson, Project coordinator at Department of Immunology, Genetics and Pathology, Uppsala University; Co-Lead Planetary Biology Capability, SciLifeLab Annika Johansson, Head of Swedish Metabolomics Centre, Umeå University, SciLifeLab |
15:30 | Short break |
15:40 | Panel Discussion 2: Data Collection in PB Research Moderator Olga Vinnere Pettersson, Co-Lead Planetary Biology Capability, SciLifeLab Panelists Rainer Pepperkok, Director of Scientific Core Facilities and Scientific Services, Team Leader Membrane traffic and Organelle Biogenesis, EMBL Stefan Bertilsson, Professor in Functional Ecology of Freshwaters, Swedish University of Agricultural Sciences; Director of the Swedish Infrastructure for Ecosystem Science (SITES); Co-Lead Planetary Biology Capability, SciLifeLab Fredrik Ronquist, Professor in the Department of Bioinformatics and Genetics, Swedish Museum of Natural History; Swedish Biodiversity Data Infrastructure (SBDI) |
16:25 | Short break |
16:35 | Panel Discussion 3: Data Management and Processing in PB Research Moderator Fergal Martin, Eukaryotic Annotation Team Leader, EMBL-EBI Panelists Lokeshwaran Manoharan, Expert in Metagenomics; National Bioinformatics Infrastructure Sweden (NBIS) Johan Rung, Head of Data Center, SciLifeLab Guy Cochrane (remote), Team Leader Data Coordination and Archiving, EMBL-EBI |
17:20 | Conclusion and Closing Remarks |
Director General
Director General
EditDirector SciLifeLab
Programme Lead for Tree of Life Programme and Senior Group Leader in Evolutionary Genomics at Wellcome Sanger Institute
Professor at University of Vienna in the Department of Microbiology and Ecosystem Science
Genome Analysis Team Leader
Genome Analysis
EditEukaryotic Annotation Team Leader
EBI Eukaryotic Annotation
EditProfessor in Comparative Genomics, Uppsala University, Scientific Director of Vertebrate Genome Biology, Broad Institute
Group Leader, Senior Scientist and Academic Mentor Postdoctoral Training
Arendt Group
EditDirector, Umeå Plant Science Center
Biodiversity project coordinator at the National Genomics Infrastructure; Co-Lead Planetary Biology Capability, SciLifeLab
Professor of Evolutionary Genetics, Swedish Museum of Natural History, Research Leader at Center for Palaeogenetics, Stockholm
Group Leader
Dorrity Group
michael.dorrity [at] embl.de
EditHead of EMBL Barcelona
EMBL Barcelona
EditGroup Leader Ecology and Evolution in Soil Fungi, Uppsala University
Professor in Functional Ecology of Freshwaters, Swedish University of Agricultural Sciences; Director of the Swedish Infrastructure for Ecosystem Science (SITES); Co-Lead Planetary Biology Capability, SciLifeLab
Group Leader
Zimmermann Group
EditProfessor at the Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences
Group Leader
Vincent Group
ORCID: 0000-0001-6976-3004
EditProfessor at the Department of Biology and Environmental Science, Linnaeus University
Associate Group Leader
Stegle Group
EditProfessor at the Department of Ecology, Swedish University of Agricultural Sciences
Group Leader in Environmental Genomics, Royal Institute of Technology
Group Leader
Kreshuk Group
anna.kreshuk [at] embl.de
EditTeam Leader and Head of Electron Microscopy Core Facility
Schwab Team
EditTeam Leader
EMBL Imaging Centre
EditScientific Platform Director Cellular and Molecular Imaging, Umeå University, SciLifeLab
Biodiversity project coordinator at the National Genomics Infrastructure; Co-Lead Planetary Biology Capability, SciLifeLab
Head of Swedish Metabolomics Centre, Umeå University, SciLifeLab; Research coordinator at Department of Plant Physiology, Umeå Plant Science Centre
Director of Scientific Core Facilities&S
Pepperkok Team
EditProfessor in Functional Ecology of Freshwaters, Swedish University of Agricultural Sciences; Director of the Swedish Infrastructure for Ecosystem Science (SITES); Co-Lead Planetary Biology Capability, SciLifeLab
Professor in the Department of Bioinformatics and Genetics, Swedish Museum of Natural History; Swedish Biodiversity Data Infrastructure (SBDI)
Expert in Metagenomics; National Bioinformatics Infrastructure Sweden (NBIS)
Head of Data Centre, SciLifeLab; Researcher in the Department of Immunology, Genetics and Pathology, Uppsala University
Team Leader, Data Coordination and Archiving
Data Coordination and Archiving
EditThis new Programme will expand EMBL’s scope to study the molecular basis of life in the context of changing environments, transforming our understanding of life on earth and informing potential solutions for some of society’s biggest challenges, such as irreversible loss of biodiversity, antimicrobial resistance, pollution, climate change, food security, and emergent pathogens.
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Date: Monday 16th May – Tuesday 17th May 2022
Time: Monday 13:00-17:30 (CEST) / Tuesday 09:30-17:30
Location: Large Operon & Online
Contacts:
Sarah Kaiser, International Relations Officer, EMBL
Dilyana Spasova, Operations Officer, EMBL