{"id":2356,"date":"2014-10-29T15:24:31","date_gmt":"2014-10-29T14:24:31","guid":{"rendered":"http:\/\/news.embl.de\/?p=2356"},"modified":"2024-11-14T16:31:11","modified_gmt":"2024-11-14T15:31:11","slug":"1410_cagekid","status":"publish","type":"post","link":"https:\/\/www.embl.org\/news\/science\/1410_cagekid\/","title":{"rendered":"Kidney cancer in Central Europe"},"content":{"rendered":"\n<ul class=\"wp-block-list\"><li>Large-scale DNA and RNA sequencing of renal cell carcinoma patients in Europe reveals primary causes of kidney cancer vary between populations.<\/li><li>Findings provide insights into the genetic architecture of clear-cell renal-cell carcinoma.<\/li><li>Association between cancer incidence and exposure to aristolochic acid \u2013&nbsp;an ingredient in some herbal remedies \u2013&nbsp;has implications for public health, particularly in Romania.<\/li><\/ul>\n\n\n<hr class=\"vf-divider\"\/>\n\n\n<p>Kidney cancer kills more than 140,000 people every year, and in Central Europe incidence rates have been increasing dramatically. CAGEKID, part of the International Cancer Genome Consortium (ICGC), has been studying the genetic causes of this disease in Europe. The project partners sequenced the DNA and RNA of normal and tumour cells in around 100 renal cell carcinoma patients from the Czech Republic, Romania, Russia and the United Kingdom. The results confirmed that certain genetic changes are associated with this type of cancer, and pointed to specific biological pathways and sets of genes that are affected by the mutations.<\/p>\n\n\n\n<p>In the majority of Romanian patients, the researchers observed a very high frequency of genetic changes that are associated with exposure to aristolochic acid, though it is not clear exactly how these patients became exposed to it.&nbsp;The findings suggest that the main causes of kidney cancer may vary between populations, and confirm that aristolochic acid is a carcinogen.<\/p>\n\n\n\n<p>The study was led by McGill University, where the DNA data analyses were carried out. \u201cWhile the study included only 14 patients from Romania, the specific mutation pattern was found in 12 of them,\u201d explains Mark Lathrop of McGill University and Genome Quebec Innovation Centre. \u201cWe will analyse samples from more patients from Romania and elsewhere in the Balkan region in follow-up research that is now under way to assess the extent of exposure.\u201d<\/p>\n\n\n\n<p>EMBL-EBI scientists contributed their expertise in handling and analysing very large volumes of data. \u201cOur group analysed the very large quantity of RNA data produced in the studies, and we saw some interesting abnormalities,\u201d says <a title=\"Alvis Brazma, EMBL-EBI\" href=\"http:\/\/www.ebi.ac.uk\/about\/people\/alvis-brazma\" target=\"_blank\" rel=\"noopener noreferrer\">Alvis Brazma, head of Functional Genomics at EMBL-EBI<\/a>. \u201cThere was clearly a loss of gene function, and that was due to changes in splicing patterns. We also saw novel fusion genes \u2013 pairs of genes that are fused together and create products that interfere with the proper functioning of the cell.\u201d<\/p>\n\n\n\n<blockquote class=\"vf-blockquote\"><p>Our study illustrates that systematic exploration of tumour DNA via massive sequencing can identify previously unsuspected causes of cancer<\/p><\/blockquote>\n\n\n\n<p>\u201cThis tumour genomic project is unique in that it is based on samples from various countries, with potential diversity in risk factors,\u201d says Ghislaine Scelo of the International Agency for Research on Cancer (IARC\/WHO). \u201cOur study illustrates that systematic exploration of tumour DNA via massive sequencing can identify previously unsuspected causes of cancer.\u201d<\/p>\n\n\n\n<p>All data from the study is available in EMBL-EBI\u2019s controlled-access <a href=\"http:\/\/www.ebi.ac.uk\/ega\">European Genome-phenome Archive (EGA)<\/a>&nbsp;and <a href=\"http:\/\/www.ebi.ac.uk\/arrayexpress\">ArrayExpress<\/a>. The datasets will be incorporated into the ICGC\u2019s pan-cancer project, which uses the EGA for data management and EMBL-EBI\u2019s Embassy Cloud for storage and data analysis.<\/p>\n\n\n\n<p><em>This post was originally published on <a href=\"https:\/\/www.ebi.ac.uk\/about\/news\/press-releases\/kidney-cancer-central-europe\" target=\"_blank\" rel=\"canonical nofollow noopener noreferrer\" data-href=\"https:\/\/www.ebi.ac.uk\/about\/news\/press-releases\/kidney-cancer-central-europe\">EMBL-EBI News.<\/a><\/em><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Kidney cancer linked to exposure to aristolochic acid, an ingredient in some herbal remedies.<\/p>\n","protected":false},"author":13,"featured_media":2397,"comment_status":"closed","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_acf_changed":false,"footnotes":""},"categories":[2,17591],"tags":[131,443,38,36,132,129],"embl_taxonomy":[],"class_list":["post-2356","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-science","category-science-technology","tag-arrayexpress","tag-brazma","tag-cancer","tag-embl-ebi","tag-european-genome-phenome-archive","tag-icgc"],"acf":{"article_intro":"<p>New research by the international Cancer Genomics of the Kidney consortium (CAGEKID) reveals an important connection between kidney cancer and exposure to aristolochic acid, an ingredient in some herbal remedies. The findings, published in <em>Nature Communications<\/em>, have important implications for public health.<\/p>\n","related_links":[{"link_description":"CAGEKID consortium","link_url":"http:\/\/www.cng.fr\/cagekid\/"},{"link_description":"International Cancer Genome Consortium","link_url":"https:\/\/icgc.org\/"},{"link_description":"International Agency for Research on Cancer (IARC\/WHO)","link_url":"http:\/\/www.iarc.fr\/"},{"link_description":"ArrayExpress","link_url":"http:\/\/www.ebi.ac.uk\/arrayexpress"},{"link_description":"European Genome-phenome Archive","link_url":"http:\/\/www.ebi.ac.uk\/ega"},{"link_description":"This story first appeared on the EMBL-EBI website, 29 October 2014","link_url":"http:\/\/www.ebi.ac.uk\/about\/news\/press-releases\/kidney-cancer-central-europe"}],"article_sources":[{"source_description":"<p>Scelo, G, <em>et al.<\/em> <em>Nature Comm<\/em> (in press). Published online 29 October 2014; DOI: 10.1038\/ncomms6135.<\/p>\n","source_link_url":"http:\/\/dx.doi.org\/10.1038\/ncomms6135"}],"vf_locked":false,"featured":false,"color":"#007B53"},"embl_taxonomy_terms":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v26.2 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>Kidney cancer in Central Europe | EMBL<\/title>\n<meta name=\"description\" content=\"New research by the CAGEKID consortium reveals a connection between kidney cancer and exposure to aristolochic acid, an ingredient in some herbal remedies.\" \/>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/www.embl.org\/news\/science\/1410_cagekid\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Kidney cancer in Central Europe | EMBL\" \/>\n<meta property=\"og:description\" content=\"New research by the CAGEKID consortium reveals a connection between kidney cancer and exposure to aristolochic acid, an ingredient in some herbal remedies.\" \/>\n<meta property=\"og:url\" content=\"https:\/\/www.embl.org\/news\/science\/1410_cagekid\/\" \/>\n<meta property=\"og:site_name\" content=\"EMBL\" \/>\n<meta property=\"article:publisher\" content=\"https:\/\/www.facebook.com\/embl.org\/\" \/>\n<meta property=\"article:author\" content=\"www.facebook.com\/EMBLEBI\" \/>\n<meta property=\"article:published_time\" content=\"2014-10-29T14:24:31+00:00\" \/>\n<meta property=\"article:modified_time\" content=\"2024-11-14T15:31:11+00:00\" \/>\n<meta property=\"og:image\" content=\"https:\/\/www.embl.org\/news\/wp-content\/uploads\/2014\/10\/CageKid2_news_EMBL.jpg\" \/>\n\t<meta property=\"og:image:width\" content=\"620\" \/>\n\t<meta property=\"og:image:height\" content=\"465\" \/>\n\t<meta property=\"og:image:type\" content=\"image\/jpeg\" \/>\n<meta name=\"author\" content=\"Mary Todd Bergman\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:creator\" content=\"@EMBLEBI\" \/>\n<meta name=\"twitter:site\" content=\"@embl\" \/>\n<meta name=\"twitter:label1\" content=\"Written by\" \/>\n\t<meta name=\"twitter:data1\" content=\"Mary Todd Bergman\" \/>\n\t<meta name=\"twitter:label2\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data2\" content=\"2 minutes\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"NewsArticle\",\"@id\":\"https:\/\/www.embl.org\/news\/science\/1410_cagekid\/#article\",\"isPartOf\":{\"@id\":\"https:\/\/www.embl.org\/news\/science\/1410_cagekid\/\"},\"author\":{\"name\":\"Mary Todd Bergman\",\"@id\":\"https:\/\/www.embl.org\/news\/#\/schema\/person\/052a43af2beb3860bffa67c0f0474875\"},\"headline\":\"Kidney cancer in Central Europe\",\"datePublished\":\"2014-10-29T14:24:31+00:00\",\"dateModified\":\"2024-11-14T15:31:11+00:00\",\"mainEntityOfPage\":{\"@id\":\"https:\/\/www.embl.org\/news\/science\/1410_cagekid\/\"},\"wordCount\":503,\"publisher\":{\"@id\":\"https:\/\/www.embl.org\/news\/#organization\"},\"image\":{\"@id\":\"https:\/\/www.embl.org\/news\/science\/1410_cagekid\/#primaryimage\"},\"thumbnailUrl\":\"https:\/\/www.embl.org\/news\/wp-content\/uploads\/2014\/10\/CageKid2_news_EMBL.jpg\",\"keywords\":[\"arrayexpress\",\"brazma\",\"cancer\",\"embl-ebi\",\"european genome-phenome archive\",\"icgc\"],\"articleSection\":[\"Science\",\"Science &amp; 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