{"id":15196,"date":"2019-02-04T17:00:44","date_gmt":"2019-02-04T16:00:44","guid":{"rendered":"https:\/\/news.embl.de\/?p=15196"},"modified":"2024-03-22T11:17:36","modified_gmt":"2024-03-22T10:17:36","slug":"new-method-to-study-gene-expression-in-yeast-cells","status":"publish","type":"post","link":"https:\/\/www.embl.org\/news\/science\/new-method-to-study-gene-expression-in-yeast-cells\/","title":{"rendered":"New method to study gene expression in yeast cells"},"content":{"rendered":"\n<p>A&nbsp;group&nbsp;of scientists, including&nbsp;EMBL\u2019s&nbsp;<a href=\"https:\/\/www.embl.de\/research\/units\/genome_biology\/steinmetz\/index.html\" target=\"_blank\" rel=\"noopener noreferrer\">Lars Steinmetz<\/a>, have developed an&nbsp;inexpensive yeast single-cell RNA sequencing (yscRNA-seq) method that is&nbsp;sensitive&nbsp;enough to explore the architecture of RNA transcription in individual yeast cells.<\/p>\n\n\n\n<p>The team\u2019s new protocol has significantly reduced the cost of yscRNA-seq to $12 per cell. They used it to measure the&nbsp;expression of genes in clonal yeast populations&nbsp;and investigate any&nbsp;differences&nbsp;between&nbsp;the cells. The expression levels of cell-cycle and metabolic genes were found to vary the most. These variations gave individual cells a competitive advantage and an increased ability to withstand corresponding environmental&nbsp;challenges.<\/p>\n\n\n\n<p>Developing high-throughput methods for analysing single-celled microorganisms such as yeast presents several challenges. The yeast cells studied are small,&nbsp;2-5 \u03bcm in diameter. They contain particularly dense transcript spacing that makes&nbsp;identifying transcription start sites difficult. The surrounding, hard cell wall also poses a literal barrier for studying RNA:&nbsp;removing the cell wall to get to the RNA can alter the RNA in the process.<\/p>\n\n\n\n<p>The scientists believe the new protocol could potentially replace older, conventional RNA-seq techniques. Additionally, it allows microbiologists to answer complex transcriptional questions that the older processes could not, such as the identification of more rarely expressed genes that would be lost in the data of conventional RNA-seq.<\/p>\n\n\n<div class=\"vf-box vf-box--normal vf-box-theme--primary\">\n<h2 class=\"vf-box__heading\">What is single-cell RNA sequencing (scRNA-seq)?<\/h2>\n<p class=\"vf-box__text\">The first step in gene expression is when a gene in an organism&#8217;s DNA is used as a template to make a closely related molecule, known as ribonucleic acid (RNA). RNA molecules are involved in a range of functions within the cell, such&nbsp;<span lang=\"EN-GB\">as <\/span><span lang=\"EN-GB\">carrying instructions for making proteins, and helping to assemble them.&nbsp;<\/span><span lang=\"EN-GB\">RNA sequencing (RNA-seq) is the process of finding out which of an organism\u2019s genes are being expressed by looking at which RNAs are present in its cells.<\/span><\/p>\n<p class=\"vf-box__text\">In <strong>bulk RNA-seq<\/strong>, the RNA in a large cell population is analysed. This will often contain RNA from many different types of cell and separating the data for each type can be difficult. Sequencing single cells (scRNA-seq) is a slower and more challenging task than testing in bulk, but allows more rarely expressed genes to be identified. Data on these genes would normally be lost in the noise of bulk RNA-seq.<\/p>\n<p class=\"vf-box__text\">The amount of biological material in a single cell is so small that not all RNA properties can be identified in a single attempt. Scientists use cell-sorting techniques to separate cell types based on parameters such as size and shape. They then use statistical methods to combine results from scRNA-seq of individual cells of the same type and study the patterns of gene expression.<\/p>\n<p class=\"vf-box__text\">A major focus of current research is the development of techniques that allow this testing of individual cells to be carried out quicker and in larger numbers (high throughput) on different types of cell.<\/p>\n<p class=\"vf-box__text\"><\/p><\/div>\n","protected":false},"excerpt":{"rendered":"<p>Scientists develop high-throughput yeast single-cell RNA sequencing method<\/p>\n","protected":false},"author":67,"featured_media":15201,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"_acf_changed":false,"footnotes":""},"categories":[2,17591],"tags":[43,539,767,329,768],"embl_taxonomy":[],"class_list":["post-15196","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-science","category-science-technology","tag-heidelberg","tag-research-highlight","tag-rna-seq","tag-steinmetz","tag-yeast"],"acf":{"article_intro":"<p><span lang=\"EN-GB\">Scientists develop high-throughput yeast single-cell RNA sequencing\u00a0method<\/span><\/p>\n","related_links":[{"link_description":"","link_url":""},{"link_description":"","link_url":""}],"article_sources":[{"source_description":"<p>Nadal-Ribelles, M., <em>et al<\/em>. Sensitive high-throughput single-cell RNA-seq reveals within-clonal transcript correlations in yeast populations. <em>Nature Microbiology, <\/em>published online 4 February 2019.<em>\u00a0<\/em>DOI: 10.1038\/s41564-018-0346-9<\/p>\n","source_link_url":"http:\/\/dx.doi.org\/10.1038\/s41564-018-0346-9"}],"vf_locked":false,"featured":false,"color":"#007B53","show_featured_image":false,"field_target_display":"embl","source_article":false,"in_this_article":false,"press_contact":"None"},"embl_taxonomy_terms":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v26.2 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>New method to study gene expression in yeast cells | EMBL<\/title>\n<meta name=\"description\" content=\"Scientists develop high-throughput single-cell RNA sequencing\u00a0method that can be used to study single-celled microorganisms such as yeast.\" \/>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/www.embl.org\/news\/science\/new-method-to-study-gene-expression-in-yeast-cells\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"New method to study gene expression in yeast cells | EMBL\" \/>\n<meta property=\"og:description\" content=\"Scientists develop high-throughput single-cell RNA sequencing\u00a0method that can be used to study single-celled microorganisms such as yeast.\" \/>\n<meta property=\"og:url\" content=\"https:\/\/www.embl.org\/news\/science\/new-method-to-study-gene-expression-in-yeast-cells\/\" \/>\n<meta property=\"og:site_name\" content=\"EMBL\" \/>\n<meta property=\"article:publisher\" content=\"https:\/\/www.facebook.com\/embl.org\/\" \/>\n<meta property=\"article:published_time\" content=\"2019-02-04T16:00:44+00:00\" \/>\n<meta property=\"article:modified_time\" content=\"2024-03-22T10:17:36+00:00\" \/>\n<meta property=\"og:image\" content=\"https:\/\/www.embl.org\/news\/wp-content\/uploads\/2019\/02\/YeastCell-Emble-Fine-High2_for-web.jpg\" \/>\n\t<meta property=\"og:image:width\" content=\"620\" \/>\n\t<meta property=\"og:image:height\" content=\"425\" \/>\n\t<meta property=\"og:image:type\" content=\"image\/jpeg\" \/>\n<meta name=\"author\" content=\"Josh Tapley\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:creator\" content=\"@embl\" \/>\n<meta name=\"twitter:site\" content=\"@embl\" \/>\n<meta name=\"twitter:label1\" content=\"Written by\" \/>\n\t<meta name=\"twitter:data1\" content=\"Josh Tapley\" \/>\n\t<meta name=\"twitter:label2\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data2\" content=\"2 minutes\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"NewsArticle\",\"@id\":\"https:\/\/www.embl.org\/news\/science\/new-method-to-study-gene-expression-in-yeast-cells\/#article\",\"isPartOf\":{\"@id\":\"https:\/\/www.embl.org\/news\/science\/new-method-to-study-gene-expression-in-yeast-cells\/\"},\"author\":{\"name\":\"Josh Tapley\",\"@id\":\"https:\/\/www.embl.org\/news\/#\/schema\/person\/d242d2d21f1166a7e8e67e3e28fd5479\"},\"headline\":\"New method to study gene expression in yeast cells\",\"datePublished\":\"2019-02-04T16:00:44+00:00\",\"dateModified\":\"2024-03-22T10:17:36+00:00\",\"mainEntityOfPage\":{\"@id\":\"https:\/\/www.embl.org\/news\/science\/new-method-to-study-gene-expression-in-yeast-cells\/\"},\"wordCount\":499,\"publisher\":{\"@id\":\"https:\/\/www.embl.org\/news\/#organization\"},\"image\":{\"@id\":\"https:\/\/www.embl.org\/news\/science\/new-method-to-study-gene-expression-in-yeast-cells\/#primaryimage\"},\"thumbnailUrl\":\"https:\/\/www.embl.org\/news\/wp-content\/uploads\/2019\/02\/YeastCell-Emble-Fine-High2_for-web.jpg\",\"keywords\":[\"heidelberg\",\"research highlight\",\"rna-seq\",\"steinmetz\",\"yeast\"],\"articleSection\":[\"Science\",\"Science &amp; 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