{"id":13457,"date":"2018-05-29T16:30:48","date_gmt":"2018-05-29T14:30:48","guid":{"rendered":"https:\/\/news.embl.de\/?p=13457"},"modified":"2024-03-22T23:18:39","modified_gmt":"2024-03-22T22:18:39","slug":"reconstructing-3d-shapes-unmeasurable-data","status":"publish","type":"post","link":"https:\/\/www.embl.org\/news\/science\/reconstructing-3d-shapes-unmeasurable-data\/","title":{"rendered":"Reconstructing 3D shapes from unmeasurable data"},"content":{"rendered":"\n<p>A big challenge in modern structural biology is the characterisation of dynamic biological systems. For example, the formation of amyloid fibrils: aggregates of proteins that play a major role in neurodegenerative diseases like Alzheimer&#8217;s. The intermediates of such processes are hard to study, because they always co-exist with initial and final states.<\/p>\n\n\n\n<p>Dmitri Svergun, group leader at EMBL Hamburg, succeeded in reconstructing the 3D shape of such unmeasurable intermediate macromolecular states, together with Petr Konarev from the Crystallography and Photonics Research Center in Moscow. The Journal of the International Union of Crystallography (IUCrJ) publishes their new method on May 29.<\/p>\n\n\n\n<p>Svergun and Konarev reconstructed the shapes directly from multiple small-angle X-ray scattering (<a href=\"https:\/\/www.embl-hamburg.de\/biosaxs\/?_ga=2.70331856.1161551782.1523966726-1661197863.1523429761\" target=\"_blank\" rel=\"noopener noreferrer\">SAXS<\/a>) datasets taken on an evolving system. The new approach will be useful for interpreting a broad range of experiments on dynamic biological systems and intermediate states, such as protein folding and unfolding, or viral self-assembly during replication.<\/p>\n\n\n\n<div class=\"vf-video\" style=\"padding-top: 0; padding-bottom: 56.25%;\">\n    <iframe loading=\"lazy\" width=\"640\" height=\"360\" src=\"https:\/\/www.youtube.com\/embed\/2HS4SOdxbS8\" frameborder=\"0\" allow=\"autoplay; encrypted-media\" allowfullscreen><\/iframe>\n<\/div>\n\n\n\n<p class=\"vf-u-margin__bottom--m\"><\/p>\n\n\n\n<p class=\"vf-figure__caption\">Video explaining small-angle X-ray scattering. CREDIT: WeNMR, Spronk 3D studio &amp; EMBL Svergun group.<em><br \/><\/em><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Scientists at EMBL Hamburg determine shapes of intermediate states in dynamic biological systems<\/p>\n","protected":false},"author":58,"featured_media":13477,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"_acf_changed":false,"footnotes":""},"categories":[2,17591],"tags":[633,53,539,251,250],"embl_taxonomy":[],"class_list":["post-13457","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-science","category-science-technology","tag-dynamic-systems","tag-hamburg","tag-research-highlight","tag-small-angle-x-ray-scattering-saxs","tag-svergun"],"acf":{"article_intro":"<p>Scientists at EMBL Hamburg determine shapes of intermediate states in dynamic biological systems<\/p>\n","related_links":[{"link_description":"Research of the Svergun group","link_url":"http:\/\/www.embl-hamburg.de\/research\/unit\/svergun\/"},{"link_description":"On a SAXS quest","link_url":"https:\/\/news.embl.de\/events\/1411_saxs\/"}],"article_sources":[{"source_description":"<p>Petr V. Konarev and Dmitri I. Svergun. Direct shape determination of intermediates in evolving macromolecular solutions from small-angle scattering data. IUCrJ, published online 29 May 2018. DOI: https:\/\/doi.org\/10.1107\/S2052252518005900<\/p>\n","source_link_url":"https:\/\/doi.org\/10.1107\/S2052252518005900"}],"vf_locked":false,"featured":false,"color":"#007B53"},"embl_taxonomy_terms":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v26.2 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>Reconstructing 3D shapes from unmeasurable data | EMBL<\/title>\n<meta name=\"description\" content=\"Scientists at EMBL Hamburg determine shapes of intermediate states in dynamic biological systems, like protein folding and unfolding, based on multiple small-angle X-ray scattering (SAXS) datasets\" \/>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/www.embl.org\/news\/science\/reconstructing-3d-shapes-unmeasurable-data\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Reconstructing 3D shapes from unmeasurable data | EMBL\" \/>\n<meta property=\"og:description\" content=\"Scientists at EMBL Hamburg determine shapes of intermediate states in dynamic biological systems, like protein folding and unfolding, based on multiple small-angle X-ray scattering (SAXS) datasets\" \/>\n<meta property=\"og:url\" content=\"https:\/\/www.embl.org\/news\/science\/reconstructing-3d-shapes-unmeasurable-data\/\" \/>\n<meta property=\"og:site_name\" content=\"EMBL\" \/>\n<meta property=\"article:publisher\" content=\"https:\/\/www.facebook.com\/embl.org\/\" \/>\n<meta property=\"article:published_time\" content=\"2018-05-29T14:30:48+00:00\" \/>\n<meta property=\"article:modified_time\" content=\"2024-03-22T22:18:39+00:00\" \/>\n<meta property=\"og:image\" content=\"https:\/\/www.embl.org\/news\/wp-content\/uploads\/2018\/05\/0529-Svergun-620x425-ib.jpg\" \/>\n\t<meta property=\"og:image:width\" content=\"620\" \/>\n\t<meta property=\"og:image:height\" content=\"425\" \/>\n\t<meta property=\"og:image:type\" content=\"image\/jpeg\" \/>\n<meta name=\"author\" content=\"Iris Kruijen\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:creator\" content=\"@IrisKruijen\" \/>\n<meta name=\"twitter:site\" content=\"@embl\" \/>\n<meta name=\"twitter:label1\" content=\"Written by\" \/>\n\t<meta name=\"twitter:data1\" content=\"Iris Kruijen\" \/>\n\t<meta name=\"twitter:label2\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data2\" content=\"1 minute\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"NewsArticle\",\"@id\":\"https:\/\/www.embl.org\/news\/science\/reconstructing-3d-shapes-unmeasurable-data\/#article\",\"isPartOf\":{\"@id\":\"https:\/\/www.embl.org\/news\/science\/reconstructing-3d-shapes-unmeasurable-data\/\"},\"author\":{\"name\":\"Iris Kruijen\",\"@id\":\"https:\/\/www.embl.org\/news\/#\/schema\/person\/bdd9b4c648f9ed37311c369a20ac77e1\"},\"headline\":\"Reconstructing 3D shapes from unmeasurable data\",\"datePublished\":\"2018-05-29T14:30:48+00:00\",\"dateModified\":\"2024-03-22T22:18:39+00:00\",\"mainEntityOfPage\":{\"@id\":\"https:\/\/www.embl.org\/news\/science\/reconstructing-3d-shapes-unmeasurable-data\/\"},\"wordCount\":170,\"publisher\":{\"@id\":\"https:\/\/www.embl.org\/news\/#organization\"},\"image\":{\"@id\":\"https:\/\/www.embl.org\/news\/science\/reconstructing-3d-shapes-unmeasurable-data\/#primaryimage\"},\"thumbnailUrl\":\"https:\/\/www.embl.org\/news\/wp-content\/uploads\/2018\/05\/0529-Svergun-620x425-ib.jpg\",\"keywords\":[\"dynamic systems\",\"hamburg\",\"research highlight\",\"small-angle x-ray scattering (saxs)\",\"svergun\"],\"articleSection\":[\"Science\",\"Science &amp; 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