{"id":1166,"date":"2014-06-21T15:42:46","date_gmt":"2014-06-21T13:42:46","guid":{"rendered":"http:\/\/news.embl.de\/?p=1166"},"modified":"2024-11-14T16:33:15","modified_gmt":"2024-11-14T15:33:15","slug":"ocean-sampling-day-2014","status":"publish","type":"post","link":"https:\/\/www.embl.org\/news\/science\/ocean-sampling-day-2014\/","title":{"rendered":"Capturing marine biodiversity"},"content":{"rendered":"\n<p>The data collected will be shared publicly&nbsp;via EMBL-EBI\u2019s&nbsp;<a href=\"http:\/\/www.ebi.ac.uk\/ena\/\">European Nucleotide Archive<\/a>&nbsp;and&nbsp;<a href=\"https:\/\/www.ebi.ac.uk\/metagenomics\/\">Metagenomics Portal<\/a>, environmental database PANGAEA, and European portals SeaDataNet and EurOBIS.<\/p>\n\n\n\n<p>Because of the falling costs of DNA sequencing, marine scientists can now use this technology widely to understand the important but complex communities that make up&nbsp;ocean life. \u201cMicrobes may be small, but they sustain so many of our planet\u2019s critical resources and harbour potentially useful compounds,\u201d comments Guy Cochrane, who&nbsp;leads the European Nucleotide Archive at the European Bioinformatics Institute (EMBL-EBI).<\/p>\n\n\n\n<h3 class=\"wp-block-heading\">Speaking the same language<\/h3>\n\n\n\n<p>Scientists working in <a href=\"http:\/\/www.microb3.eu\/\">Micro B3<\/a>, the EU-funded project behind Ocean Sampling Day, have been finding new ways to integrate DNA sequencing, ecology and oceanography&nbsp;data and to apply these methods across the world\u2019s oceans.<\/p>\n\n\n\n<p>\u201cOne of the driving principles of this project is conation to collaborate and to share knowledge for a purpose that far exceeds borders of scientific domains and national&nbsp;territories,\u201d says Petra ten Hoopen of EMBL-EBI, who coordinated the Micro B3 Standards team. \u201cOceanographers, molecular and ecosystem biologists, bioinformaticians,&nbsp;all had different ways of referring to the same information. We have learned a great deal how to efficiently work together and share information. Over 160 sampling&nbsp;stations worldwide agreed to follow a single sampling protocol in order to contribute to hitherto the biggest single-day snapshot of world\u2019s oceans. Only in alliance we can&nbsp;catch a glimpse of the wealth and potential of the deep sea.\u201d<\/p>\n\n\n\n<p>MicroB3 has run pilot ocean sampling days to test-run standardised methods for sampling, shipping, sequencing, data transfer and analysis. Now that the bumps have&nbsp;been smoothed out, the project is ready to go.<\/p>\n\n\n\n<h3 class=\"wp-block-heading\">A new era for marine research<\/h3>\n\n\n\n<p>\u201cWith more than 160 sampling sites worldwide, Ocean Sampling Day has exceeded our wildest dreams,\u201d says Micro B3 coordinator Prof. Dr Frank-Oliver Gl\u00f6ckner of&nbsp;Jacobs University Bremen. \u201cThe resulting dataset marks the beginning of a new area of genome-enabled site-based marine research.\u201d<\/p>\n\n\n\n<blockquote class=\"vf-blockquote\"><p>The resulting dataset marks the beginning of a new area of genome-enabled site-based marine research<\/p><\/blockquote>\n\n\n\n<p>Rob Finn of EMBL-EBI adds, \u201cSuch large-scale projects are going to become increasingly common and are essential for understanding ecological systems. The data&nbsp;analysis procedures being developed for Ocean Sampling Day are driving the field forward &#8211; but it is clear that much remains to be discovered about the microbial&nbsp;world.\u201d<\/p>\n\n\n\n<p>\u201cOcean Sampling Day is the first simultaneous sampling of the world\u2019s oceans at a significant scale,\u201d says Prof Dawn Field of the NERC&nbsp;Centre for Ecology and Hydrology&nbsp;at&nbsp;Oxford University, who is leading Ocean Sampling Day. \u201cIt is a historical event &#8211; and hopefully it\u2019s just the beginning and may continue in the future!\u201d<\/p>\n\n\n\n<h3 class=\"wp-block-heading\">Citizen science: MyOSD<\/h3>\n\n\n\n<p>Ocean Sampling Day encompasses a new citizen science initiative: <a href=\"http:\/\/www.my-osd.org\">MyOSD<\/a>, which invites citizens to upload their own scientific measurements. These&nbsp;data will be used to support those deposited by the sampling scientists. The result of both efforts will be a common pool of data to be openly shared.<\/p>\n\n\n\n<p>Anyone can be a citizen scientist and collect environmental data for Ocean Sampling Day! If you have access to marine or fresh water &#8211; even in your garden \u2013 you can&nbsp;send in your data. MicroB3 has developed an app for android smartphones and iPhones for everyone to use. You can find full instructions at&nbsp;<a href=\"http:\/\/www.my-osd.org\">www.my-osd.org<\/a>.<\/p>\n\n\n\n<h3 class=\"wp-block-heading\">Data sharing<\/h3>\n\n\n\n<p>Ocean Sampling Day is underpinned by clear data-sharing agreements, put in place to expedite the spread of new knowledge about our ecosystems and the sustainable&nbsp;use of marine genetic resources. Following DNA sequencing of the collected samples, bioinformatics will be used to identify species and unknown functional genes. The&nbsp;MicroB3 information system will integrate data from professional and citizen science sampling and make it publicly available in major databases, following quality&nbsp;controls. MicroB3 has developed Intellectual Property (IP) recommendations to address issues such as ownership of and access to the collected samples, data and&nbsp;analysis. Ocean Sampling Day will serve as a testing ground for their long-term&nbsp;<span style=\"color: #222222;\">applicability.<\/span><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Data from first ever worldwide Ocean Sampling Day will be shared via EMBL-EBI resources this autumn.<\/p>\n","protected":false},"author":13,"featured_media":1167,"comment_status":"closed","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_acf_changed":false,"footnotes":""},"categories":[2,17591],"tags":[87,28,91,782,36,684,42,88,89,817,90],"embl_taxonomy":[],"class_list":["post-1166","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-science","category-science-technology","tag-biodiversity","tag-bioinformatics","tag-biotechnology","tag-database","tag-embl-ebi","tag-environment","tag-genomics","tag-metagenomics","tag-microb3","tag-ocean","tag-ocean-sampling-day"],"acf":{"article_intro":"<p>On 21 June 2014, researchers throughout the world began\u00a0sampling the oceans in a push to capture the microbial biodiversity of marine surface water. The first Ocean\u00a0Sampling Day took\u00a0place at over 160 sites spanning Iceland, Antarctica, French Polynesia, the Americas and South Africa.<\/p>\n","related_links":[{"link_description":"","link_url":""},{"link_description":"","link_url":""},{"link_description":"","link_url":""},{"link_description":"","link_url":""},{"link_description":"","link_url":""},{"link_description":"","link_url":""}],"article_sources":false,"vf_locked":false,"featured":false,"color":"#007B53","show_featured_image":false,"field_target_display":"embl","source_article":false,"in_this_article":false,"press_contact":"None"},"embl_taxonomy_terms":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v26.2 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>Capturing marine biodiversity | EMBL<\/title>\n<meta name=\"description\" content=\"Data from first ever worldwide Ocean Sampling Day will be shared via EMBL-EBI resources this autumn.\" \/>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/www.embl.org\/news\/science\/ocean-sampling-day-2014\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Capturing marine biodiversity | EMBL\" \/>\n<meta property=\"og:description\" content=\"Data from first ever worldwide Ocean Sampling Day will be shared via EMBL-EBI resources this autumn.\" \/>\n<meta property=\"og:url\" content=\"https:\/\/www.embl.org\/news\/science\/ocean-sampling-day-2014\/\" \/>\n<meta property=\"og:site_name\" content=\"EMBL\" \/>\n<meta property=\"article:publisher\" content=\"https:\/\/www.facebook.com\/embl.org\/\" \/>\n<meta property=\"article:author\" content=\"www.facebook.com\/EMBLEBI\" \/>\n<meta property=\"article:published_time\" content=\"2014-06-21T13:42:46+00:00\" \/>\n<meta property=\"article:modified_time\" content=\"2024-11-14T15:33:15+00:00\" \/>\n<meta property=\"og:image\" content=\"https:\/\/www.embl.org\/news\/wp-content\/uploads\/2014\/07\/OSD_news.jpg\" \/>\n\t<meta property=\"og:image:width\" content=\"900\" \/>\n\t<meta property=\"og:image:height\" content=\"600\" \/>\n\t<meta property=\"og:image:type\" content=\"image\/jpeg\" \/>\n<meta name=\"author\" content=\"Mary Todd Bergman\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:creator\" content=\"@EMBLEBI\" \/>\n<meta name=\"twitter:site\" content=\"@embl\" \/>\n<meta name=\"twitter:label1\" content=\"Written by\" \/>\n\t<meta name=\"twitter:data1\" content=\"Mary Todd Bergman\" \/>\n\t<meta name=\"twitter:label2\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data2\" content=\"3 minutes\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"NewsArticle\",\"@id\":\"https:\/\/www.embl.org\/news\/science\/ocean-sampling-day-2014\/#article\",\"isPartOf\":{\"@id\":\"https:\/\/www.embl.org\/news\/science\/ocean-sampling-day-2014\/\"},\"author\":{\"name\":\"Mary Todd Bergman\",\"@id\":\"https:\/\/www.embl.org\/news\/#\/schema\/person\/052a43af2beb3860bffa67c0f0474875\"},\"headline\":\"Capturing marine biodiversity\",\"datePublished\":\"2014-06-21T13:42:46+00:00\",\"dateModified\":\"2024-11-14T15:33:15+00:00\",\"mainEntityOfPage\":{\"@id\":\"https:\/\/www.embl.org\/news\/science\/ocean-sampling-day-2014\/\"},\"wordCount\":692,\"publisher\":{\"@id\":\"https:\/\/www.embl.org\/news\/#organization\"},\"image\":{\"@id\":\"https:\/\/www.embl.org\/news\/science\/ocean-sampling-day-2014\/#primaryimage\"},\"thumbnailUrl\":\"https:\/\/www.embl.org\/news\/wp-content\/uploads\/2014\/07\/OSD_news.jpg\",\"keywords\":[\"biodiversity\",\"bioinformatics\",\"biotechnology\",\"database\",\"embl-ebi\",\"environment\",\"genomics\",\"metagenomics\",\"microb3\",\"ocean\",\"ocean sampling day\"],\"articleSection\":[\"Science\",\"Science &amp; 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