{"id":279,"date":"2025-07-22T09:50:57","date_gmt":"2025-07-22T09:50:57","guid":{"rendered":"https:\/\/www.embl.org\/groups\/x-ray-imaging\/?page_id=279"},"modified":"2025-07-29T14:57:45","modified_gmt":"2025-07-29T14:57:45","slug":"how-to-download-your-data","status":"publish","type":"page","link":"https:\/\/www.embl.org\/groups\/x-ray-imaging\/how-to-download-your-data\/","title":{"rendered":"How to download your data"},"content":{"rendered":"\n<div class=\"vf-grid | vf-grid__col-3\"><div class=\"vf-grid__col--span-2\"><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<p>You can download your data by connecting to <strong>cerberus.embl-hamburg.de<\/strong> with your user credentials (p3l-account and corresponding password). You can find them at the bottom of your beamtime invitation e-mail after successfully submitting the beamtime A-Form. Please notify your local contact in advance by e-mail and wait for a response to confirm that your account has been activated for download.<\/p>\n\n\n\n<p>Please make sure you have enough disk space on your local machine, where you want to save the data.<\/p>\n\n\n\n<p><\/p>\n\n\n\n<p>If you run into any trouble downloading the acquired HiTT reconstructions or are interested in downloading raw data, please get in touch with your Local Contact.&nbsp;<br><\/p>\n\n\n\n<p>You can connect to the server using different protocols:<\/p>\n\n<\/div>\n<\/div>\n\n\n<div><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<\/div>\n<\/div>\n<\/div>\n\n\n\n<div class=\"vf-grid | vf-grid__col-3\"><div class=\"vf-grid__col--span-2\"><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<h2 class=\"wp-block-heading\">SFTP Client<\/h2>\n\n\n\n<p>We recommend the use of FileZilla, which is available for Windows, MacOS, and Linux. Other SFTP clients should also work without any issues.<br><\/p>\n\n\n\n<h3 class=\"wp-block-heading\">Step 1: <\/h3>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Add the server in the FileZilla Site Manager\n<ul class=\"wp-block-list\">\n<li>Protocol: SFTP &#8211; SSH File Transfer Protocol<\/li>\n\n\n\n<li>Host: <a href=\"http:\/\/cerberus.embl-hamburg.de\/\">cerberus.embl-hamburg.de<\/a><\/li>\n\n\n\n<li>Port: 22443<\/li>\n\n\n\n<li>User: p3l-username<\/li>\n\n\n\n<li>Password: p3l-userPassword<\/li>\n<\/ul>\n<\/li>\n<\/ul>\n\n\n\n<figure class=\"vf-figure wp-block-image size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"599\" class=\"vf-figure__image\" src=\"https:\/\/www.embl.org\/groups\/x-ray-imaging\/wp-content\/uploads\/2025\/07\/download1-1024x599.jpg\" alt=\"\" class=\"wp-image-305\" srcset=\"https:\/\/www.embl.org\/groups\/x-ray-imaging\/wp-content\/uploads\/2025\/07\/download1-1024x599.jpg 1024w, https:\/\/www.embl.org\/groups\/x-ray-imaging\/wp-content\/uploads\/2025\/07\/download1-300x175.jpg 300w, https:\/\/www.embl.org\/groups\/x-ray-imaging\/wp-content\/uploads\/2025\/07\/download1-768x449.jpg 768w, https:\/\/www.embl.org\/groups\/x-ray-imaging\/wp-content\/uploads\/2025\/07\/download1.jpg 1081w\" sizes=\"auto, (max-width: 1024px) 100vw, 1024px\" \/><\/figure>\n\n\n\n<div style=\"height:60px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<h3 class=\"wp-block-heading\">Step 2:<\/h3>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Go to your data directory (red box below). \n<ul class=\"wp-block-list\">\n<li>The path is always structured like this: <br><br><code>\/mnt\/beegfs7\/P14\/&lt;year&gt;\/&lt;p3l-username&gt;\/RECON\/&lt;YYYYMMDD&gt;\/<\/code><\/li>\n<\/ul>\n<\/li>\n<\/ul>\n\n\n\n<p>Select your local directory on the left side. Select the remote data that you would like to download. Right click on the selected data and press \u201cAdd to queue\u201d. You will see all selected data appearing in the queue. Start the&nbsp;download by right-clicking on the queue and selecting \u201cProcess Queue\u201d.<\/p>\n\n\n\n<figure class=\"vf-figure wp-block-image size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"660\" class=\"vf-figure__image\" src=\"https:\/\/www.embl.org\/groups\/x-ray-imaging\/wp-content\/uploads\/2025\/07\/download2-1024x660.jpg\" alt=\"\" class=\"wp-image-303\" srcset=\"https:\/\/www.embl.org\/groups\/x-ray-imaging\/wp-content\/uploads\/2025\/07\/download2-1024x660.jpg 1024w, https:\/\/www.embl.org\/groups\/x-ray-imaging\/wp-content\/uploads\/2025\/07\/download2-300x194.jpg 300w, https:\/\/www.embl.org\/groups\/x-ray-imaging\/wp-content\/uploads\/2025\/07\/download2-768x495.jpg 768w, https:\/\/www.embl.org\/groups\/x-ray-imaging\/wp-content\/uploads\/2025\/07\/download2-1536x991.jpg 1536w, https:\/\/www.embl.org\/groups\/x-ray-imaging\/wp-content\/uploads\/2025\/07\/download2.jpg 1817w\" sizes=\"auto, (max-width: 1024px) 100vw, 1024px\" \/><\/figure>\n\n\n<nav class=\"vf-breadcrumbs\" aria-label=\"Breadcrumb\">\n  <ul class=\"vf-breadcrumbs__list | vf-list vf-list--inline\">\n  <\/ul>\n<\/nav>\n\n<\/div>\n<\/div>\n\n\n<div><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<article class=\"vf-card vf-card--brand vf-card--bordered vf-u-margin__bottom--800\" default>\n<img decoding=\"async\" width=\"1024\" height=\"445\" src=\"https:\/\/www.embl.org\/groups\/x-ray-imaging\/wp-content\/uploads\/2025\/07\/FileZilla_icon-1-1024x445.png\" class=\"vf-card__image\" alt=\"\" loading=\"lazy\" itemprop=\"image\" srcset=\"https:\/\/www.embl.org\/groups\/x-ray-imaging\/wp-content\/uploads\/2025\/07\/FileZilla_icon-1-1024x445.png 1024w, https:\/\/www.embl.org\/groups\/x-ray-imaging\/wp-content\/uploads\/2025\/07\/FileZilla_icon-1-300x130.png 300w, https:\/\/www.embl.org\/groups\/x-ray-imaging\/wp-content\/uploads\/2025\/07\/FileZilla_icon-1-768x334.png 768w, https:\/\/www.embl.org\/groups\/x-ray-imaging\/wp-content\/uploads\/2025\/07\/FileZilla_icon-1.png 1515w\" sizes=\"auto, (max-width: 1024px) 100vw, 1024px\" \/>  <div class=\"vf-card__content | vf-stack vf-stack--400\">\n      <h3 class=\"vf-card__heading\">\n              <a class=\"vf-card__link\" href=\"https:\/\/filezilla-project.org\/download.php?type=client\">\n      FileZilla       <svg aria-hidden=\"true\" class=\"vf-card__heading__icon | vf-icon vf-icon-arrow--inline-end\" width=\"1em\" height=\"1em\" xmlns=\"http:\/\/www.w3.org\/2000\/svg\">\n          <path d=\"M0 12c0 6.627 5.373 12 12 12s12-5.373 12-12S18.627 0 12 0C5.376.008.008 5.376 0 12zm13.707-5.209l4.5 4.5a1 1 0 010 1.414l-4.5 4.5a1 1 0 01-1.414-1.414l2.366-2.367a.25.25 0 00-.177-.424H6a1 1 0 010-2h8.482a.25.25 0 00.177-.427l-2.366-2.368a1 1 0 011.414-1.414z\" fill=\"currentColor\" fill-rule=\"nonzero\"><\/path>\n       <\/svg>\n        <\/a>\n          <\/h3>\n                <p class=\"vf-card__text\">Download the FileZilla software.<\/p>\n      <\/div>\n<\/article>\n\n\n<\/div>\n<\/div>\n<\/div>\n\n\n\n<div class=\"vf-grid | vf-grid__col-3\"><div class=\"vf-grid__col--span-2\"><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<h2 class=\"wp-block-heading\">rsync<\/h2>\n\n\n\n<p>rsync is a powerful terminal-based synchronization client available for Linux and MacOS. To download the data, just type the following in your terminal window:<\/p>\n\n\n\n<p><code>rsync -avr -e \"ssh -p 22443\" p3l-&lt;user&gt;@cerberus.embl-hamburg.de:\/mnt\/beegfs7\/P14&gt;\/&lt;YEAR&gt;\/p3l-&lt;user&gt;\/RECON\/&lt;yyyy&gt;&lt;mm&gt;&lt;dd&gt; &lt;LocalTargetFolder&gt;<\/code><\/p>\n\n\n\n<figure class=\"vf-figure wp-block-image size-full\"><img loading=\"lazy\" decoding=\"async\" width=\"823\" height=\"546\" class=\"vf-figure__image\" src=\"https:\/\/www.embl.org\/groups\/x-ray-imaging\/wp-content\/uploads\/2025\/07\/image.jpeg\" alt=\"\" class=\"wp-image-304\" srcset=\"https:\/\/www.embl.org\/groups\/x-ray-imaging\/wp-content\/uploads\/2025\/07\/image.jpeg 823w, https:\/\/www.embl.org\/groups\/x-ray-imaging\/wp-content\/uploads\/2025\/07\/image-300x199.jpeg 300w, https:\/\/www.embl.org\/groups\/x-ray-imaging\/wp-content\/uploads\/2025\/07\/image-768x510.jpeg 768w\" sizes=\"auto, (max-width: 823px) 100vw, 823px\" \/><\/figure>\n\n<\/div>\n<\/div>\n\n\n<div><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<article class=\"vf-card vf-card--brand vf-card--bordered vf-u-margin__bottom--800\" default>\n<img decoding=\"async\" width=\"320\" height=\"200\" src=\"https:\/\/www.embl.org\/groups\/x-ray-imaging\/wp-content\/uploads\/2025\/07\/newrsynclogo.jpg\" class=\"vf-card__image\" alt=\"\" loading=\"lazy\" itemprop=\"image\" srcset=\"https:\/\/www.embl.org\/groups\/x-ray-imaging\/wp-content\/uploads\/2025\/07\/newrsynclogo.jpg 320w, https:\/\/www.embl.org\/groups\/x-ray-imaging\/wp-content\/uploads\/2025\/07\/newrsynclogo-300x188.jpg 300w\" sizes=\"auto, (max-width: 320px) 100vw, 320px\" \/>  <div class=\"vf-card__content | vf-stack vf-stack--400\">\n      <h3 class=\"vf-card__heading\">\n              <a class=\"vf-card__link\" href=\"https:\/\/rsync.samba.org\">\n      rsync       <svg aria-hidden=\"true\" class=\"vf-card__heading__icon | vf-icon vf-icon-arrow--inline-end\" width=\"1em\" height=\"1em\" xmlns=\"http:\/\/www.w3.org\/2000\/svg\">\n          <path d=\"M0 12c0 6.627 5.373 12 12 12s12-5.373 12-12S18.627 0 12 0C5.376.008.008 5.376 0 12zm13.707-5.209l4.5 4.5a1 1 0 010 1.414l-4.5 4.5a1 1 0 01-1.414-1.414l2.366-2.367a.25.25 0 00-.177-.424H6a1 1 0 010-2h8.482a.25.25 0 00.177-.427l-2.366-2.368a1 1 0 011.414-1.414z\" fill=\"currentColor\" fill-rule=\"nonzero\"><\/path>\n       <\/svg>\n        <\/a>\n          <\/h3>\n                <p class=\"vf-card__text\">Find out more about rsync.<\/p>\n      <\/div>\n<\/article>\n\n\n<\/div>\n<\/div>\n<\/div>\n\n\n\n<p><\/p>\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":6,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"template-title-left-aligned.php","meta":{"_acf_changed":false,"footnotes":""},"embl_taxonomy":[],"class_list":["post-279","page","type-page","status-publish","hentry"],"acf":[],"embl_taxonomy_terms":[],"_links":{"self":[{"href":"https:\/\/www.embl.org\/groups\/x-ray-imaging\/wp-json\/wp\/v2\/pages\/279","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.embl.org\/groups\/x-ray-imaging\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.embl.org\/groups\/x-ray-imaging\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.embl.org\/groups\/x-ray-imaging\/wp-json\/wp\/v2\/users\/6"}],"replies":[{"embeddable":true,"href":"https:\/\/www.embl.org\/groups\/x-ray-imaging\/wp-json\/wp\/v2\/comments?post=279"}],"version-history":[{"count":9,"href":"https:\/\/www.embl.org\/groups\/x-ray-imaging\/wp-json\/wp\/v2\/pages\/279\/revisions"}],"predecessor-version":[{"id":779,"href":"https:\/\/www.embl.org\/groups\/x-ray-imaging\/wp-json\/wp\/v2\/pages\/279\/revisions\/779"}],"wp:attachment":[{"href":"https:\/\/www.embl.org\/groups\/x-ray-imaging\/wp-json\/wp\/v2\/media?parent=279"}],"wp:term":[{"taxonomy":"embl_taxonomy","embeddable":true,"href":"https:\/\/www.embl.org\/groups\/x-ray-imaging\/wp-json\/wp\/v2\/embl_taxonomy?post=279"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}