{"id":109,"date":"2021-04-09T10:54:34","date_gmt":"2021-04-09T10:54:34","guid":{"rendered":"https:\/\/www.embl.org\/groups\/sample-preparation-characterisation\/?page_id=109"},"modified":"2021-06-07T11:19:19","modified_gmt":"2021-06-07T11:19:19","slug":"publications","status":"publish","type":"page","link":"https:\/\/www.embl.org\/groups\/sample-preparation-characterisation\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"\n<div class=\"vf-grid | vf-grid__col-3\"><div class=\"vf-grid__col--span-2\"><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<p>The following publications are (partly) based on experiments performed at the SPC:<\/p>\n\n\n\n<h3 class=\"wp-block-heading\">2021<\/h3>\n\n\n\n<p>Current Research in Structural Biology 3. 2021 Mar 5; 85-94. DOI:<a rel=\"noreferrer noopener\" href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S2665928X21000052\" target=\"_blank\"><span class=\"has-inline-color has-blue-color\">10.1016\/j.crstbi.2021.03.002 <\/span><\/a><strong> Cyclohexyl-\u03b1 maltoside as a highly efficient tool for membrane protein studies<\/strong>.                                                                                                                                                          Missel J.W, Salutros N, Ramos Becares E, Steffen J H, Gerdt Laursen A, Struve Garcia A, <strong>Garcia-Alai <\/strong>M, Kolar C, Gourdon P, Gotfryd K.<\/p>\n\n\n\n<h3 class=\"wp-block-heading\" id=\"2020\">2020<\/h3>\n\n\n\n<p>Nat Commun. 2020 Mar 11;11(1):1314. DOI: <a rel=\"noreferrer noopener\" href=\"https:\/\/www.nature.com\/articles\/s41467-020-14862-4\" target=\"_blank\">10.1038\/s41467-020-14862-4<\/a>.<br><strong>Structures of peptide-free and partially loaded MHC class I molecules reveal mechanisms of peptide selection.<\/strong><br>Anjanappa R,&nbsp;<strong>Garcia-Alai<\/strong>&nbsp;M, Kopicki JD, Lockhauserb\u00e4umer J, Aboelmagd M, Hinrichs J, Nemtanu IM, Uetrecht C, Zacharias M, Springer S, Meijers R.<\/p>\n\n\n\n<h3 class=\"wp-block-heading\" id=\"2019\">2019<\/h3>\n\n\n\n<p>Sci Immunol. 2019 Jul 19;4(37). pii: eaav0860. DOI: <a rel=\"noreferrer noopener\" href=\"https:\/\/immunology.sciencemag.org\/content\/4\/37\/eaav0860.editor-summary\" target=\"_blank\">10.1126\/sciimmunol.aav0860<\/a>.<br><strong>High-throughput peptide-MHC complex generation and kinetic screenings of TCRs with peptide-receptive HLA-A*02:01 molecules.<\/strong><br>Moritz A, Anjanappa R, Wagner C, Bunk S, Hofmann M, Pszolla G, Saikia A,&nbsp;<strong>Garcia-Alai<\/strong>&nbsp;M, Meijers R, Rammensee HG, Springer S, Maurer D.<\/p>\n\n\n\n<p>Sci Immunol. 2019 Jul 19;4(37). pii: eaau9039. DOI: <a rel=\"noreferrer noopener\" href=\"https:\/\/immunology.sciencemag.org\/content\/4\/37\/eaau9039.abstract\" target=\"_blank\">10.1126\/sciimmunol.aau9039<\/a>.<br><strong>Empty peptide-receptive MHC class I molecules for efficient detection of antigen-specific T cells.<\/strong><br>Saini SK, Tamhane T, Anjanappa R, Saikia A, Ramskov S, Donia M, Svane IM, Jakobsen SN,&nbsp;<strong>Garcia-Alai<\/strong>&nbsp;M, Zacharias M, Meijers R, Springer S, Hadrup SR.<\/p>\n\n\n\n<p>Sci Rep. 2019 Jul 17;9(1):10379. DOI: <a rel=\"noreferrer noopener\" href=\"https:\/\/www.nature.com\/articles\/s41598-019-46686-8\" target=\"_blank\">10.1038\/s41598-019-46686-8<\/a>.<br><strong>High-throughput stability screening for detergent-solubilized membrane proteins.<\/strong><br>Kotov V, Bartels K, Veith K, Josts I, Subhramanyam UKT, G\u00fcnther C, Labahn J, Marlovits TC, Moraes I, Tidow H, L\u00f6w C,&nbsp;<strong>Garcia-Alai<\/strong>&nbsp;MM.<\/p>\n\n\n\n<p>Biochim Biophys Acta Mol Cell Res. 2019 Jul;1866(7):1162-1170. DOI: <a rel=\"noreferrer noopener\" href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0167488918305408?via%3Dihub\" target=\"_blank\">10.1016\/j.bbamcr.2018.12.010<\/a>.&nbsp;<br><strong>Novel CaM-binding motif in its NudT9H domain contributes to temperature sensitivity of TRPM2.<\/strong><br>Gattkowski E, Johnsen A, Bauche A, M\u00f6ckl F, Kulow F,&nbsp;<strong>Garcia Alai<\/strong>&nbsp;M, Rutherford TJ, Fliegert R, Tidow H.<\/p>\n\n\n\n<h3 class=\"wp-block-heading\" id=\"2018\">2018<\/h3>\n\n\n\n<p>Acta Crystallogr F Struct Biol Commun. 2018 Jan 1;74(Pt 1):23-30. DOI:<a rel=\"noreferrer noopener\" href=\"https:\/\/doi.org\/10.1107\/S2053230X17017381\" target=\"_blank\">10.1107\/S2053230X17017381<\/a>. Epub 2017 Dec 15.<br><strong>Structure and stability of the Human respiratory syncytial virus M<sub>2-1<\/sub> RNA-binding core domain reveals a compact and cooperative folding unit.<\/strong><br>Molina IG, Josts I, Almeida Hernandez Y, Esperante S, Salgueiro M, Garcia Alai MM, de Prat-Gay G, Tidow H.<\/p>\n\n\n\n<p>Nat Commun. 2018 Jan 23;9(1):328. DOI:<a rel=\"noreferrer noopener\" href=\"https:\/\/doi.org\/10.1038\/s41467-017-02443-x\" target=\"_blank\">10.1038\/s41467-017-02443-x<\/a><br><strong>Epsin and Sla2 form assemblies through phospholipid interfaces.<\/strong><br>Garcia-Alai MM, Heidemann J, Skruzny M, Gieras A, Mertens HDT, Svergun DI, Kaksonen M, Uetrecht C, Meijers R.<\/p>\n\n\n\n<p>Structure. 2018 Feb 6;26(2):345-355.e5. doi:&nbsp; <a href=\"https:\/\/dx.doi.org\/10.1016%2Fj.str.2018.01.007\">10.1016\/j.str.2018.01.007<\/a><br><strong>Saposin Lipid Nanoparticles: A Highly Versatile and Modular Tool for Membrane Protein Research.<\/strong><br>Flayhan A, Mertens HDT, Ural-Blimke Y, Martinez Molledo M, Svergun DI, L\u00f6w C.<\/p>\n\n\n\n<p>Structure. 2018 Mar 6;26(3):467-476.e4. doi: 10.1016\/j.str.2018.01.005. Epub 2018 Feb 8.<br><strong>Multispecific Substrate Recognition in a Proton-Dependent Oligopeptide Transporter.<\/strong><br>Martinez Molledo M, Quistgaard EM, Flayhan A, Pieprzyk J, L\u00f6w C.<\/p>\n\n\n\n<p>J Synchrotron Radiat. 2018 Mar 1;25(Pt 2):361-372. DOI:<a rel=\"noreferrer noopener\" href=\"https:\/\/doi.org\/10.1107\/S1600577517017568\" target=\"_blank\">10.1107\/S1600577517017568<\/a>. Epub 2018 Feb 13.<br><strong>Multi-channel in situ dynamic light scattering instrumentation enhancing biological small-angle X-ray scattering experiments at the PETRA III beamline P12.<\/strong><br>Falke S, Dierks K, Blanchet C, Graewert M, Cipriani F, Meijers R, Svergun D, Betzel C.<\/p>\n\n\n\n<p>Neuron. <strong>2018 Mar 21<\/strong>;97(6):1261-1267.e4. DOI:<a rel=\"noreferrer noopener\" href=\"https:\/\/doi.org\/10.1016\/j.neuron.2018.02.010\" target=\"_blank\">10.1016\/j.neuron.2018.02.010<\/a>. Epub 2018 Mar 1.<br><strong>Structural Basis for Draxin-Modulated Axon Guidance and Fasciculation by Netrin-1 through DCC.<\/strong><br>Liu Y, Bhowmick T, Liu Y, Gao X, Mertens HDT, Svergun DI, Xiao J, Zhang Y, Wang JH, Meijers R.<\/p>\n\n\n\n<h3 class=\"wp-block-heading\" id=\"2017\"><strong>201<\/strong>7<\/h3>\n\n\n\n<p>Sci Rep. <strong>2017 Mar 9<\/strong>;7:44297. DOI:<a rel=\"noreferrer noopener\" href=\"https:\/\/doi.org\/10.1038\/srep44297\" target=\"_blank\">10.1038\/srep44297<\/a><br><strong>High-efficient production and biophysical characterisation of nicastrin and its interaction with APPC100.<\/strong><br>Yu K, Yang G, Labahn J.<\/p>\n\n\n\n<p>PLoS One. 2017 Mar 6;12(3):e0173126. DOI:<a rel=\"noreferrer noopener\" href=\"https:\/\/doi.org\/10.1371\/journal.pone.0173126\" target=\"_blank\">10.1371\/journal.pone.0173126<\/a>. eCollection 2017.<br><strong>Structure determination of a major facilitator peptide transporter: Inward facing PepTSt from Streptococcus thermophilus crystallized in space group P3121.<\/strong><br>Quistgaard EM, Martinez Molledo M, L\u00f6w C.<\/p>\n\n\n\n<p>J Synchrotron Radiat. <strong>2017 Jan 1<\/strong>;24(Pt 1):323-332. DOI:<a rel=\"noreferrer noopener\" href=\"https:\/\/doi.org\/10.1107\/S1600577516016465\" target=\"_blank\">10.1107\/S1600577516016465<\/a>. Epub 2017 Jan 1.<br><strong>P13, the EMBL macromolecular crystallography beamline at the low-emittance PETRA III ring for&nbsp;high- and low-energy phasing with variable beam focusing.<\/strong><br>Cianci M, Bourenkov G, Pompidor G, Karpics I, Kallio J, Bento I, Roessle M, Cipriani F, Fiedler S, Schneider TR.<\/p>\n\n\n\n<p><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/?term=Lipid%E2%80%90like+Peptides+can+Stabilize+Integral+Membrane+Proteins+for+Biophysical+and+Structural+Studies#\" target=\"_blank\" rel=\"noreferrer noopener\">THESIS FOR DOCTORAL DEGREE:<\/a><br><strong>Structural and functional basis of mitochondrial tRNA processing<\/strong><br>Author: Sridhara, Sagar Date: 2017-12-20<\/p>\n\n\n\n<p>Chembiochem. <strong>2017 Sep 5<\/strong>;18(17):1735-1742. DOI:<a rel=\"noreferrer noopener\" href=\"https:\/\/doi.org\/10.1002\/cbic.201700235\" target=\"_blank\">10.1002\/cbic.201700235<\/a>. Epub 2017 Jul 17.<br><strong>Lipid-like Peptides can Stabilize Integral Membrane Proteins for Biophysical and Structural Studies.<\/strong><br>Veith K, Martinez Molledo M, Almeida Hernandez Y, Josts I, Nitsche J, L\u00f6w C, Tidow H.<\/p>\n\n<\/div>\n<\/div>\n\n\n<div><!--[vf\/content]-->\n<div class=\"vf-content\">\n<div class=\"vf-links vf-links--tight vf-links__list--s vf-links__list--very-easy\">\n      <h3 class=\"vf-links__heading\">Jump to<\/h3>\n    <ul class=\"vf-links__list vf-list vf-links__list--secondary\">\n    <li class=\"vf-list__item\">\n          <a class=\"vf-list__link\" href=\"#2021\">\n        2021      <\/a>\n      <\/li>\n    <li class=\"vf-list__item\">\n          <a class=\"vf-list__link\" href=\"#2020\">\n        2020      <\/a>\n      <\/li>\n    <li class=\"vf-list__item\">\n          <a class=\"vf-list__link\" href=\"#2019\">\n        2019      <\/a>\n      <\/li>\n    <li class=\"vf-list__item\">\n          <a class=\"vf-list__link\" href=\"#2018\">\n        2018      <\/a>\n      <\/li>\n    <li class=\"vf-list__item\">\n          <a class=\"vf-list__link\" href=\"#2017\">\n        2017      <\/a>\n      <\/li>\n  <\/ul>\n\n<\/div>\n\n<\/div>\n<\/div>\n<\/div>\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"template-title-left-aligned.php","meta":{"_acf_changed":false,"footnotes":""},"embl_taxonomy":[],"class_list":["post-109","page","type-page","status-publish","hentry"],"acf":[],"embl_taxonomy_terms":[],"_links":{"self":[{"href":"https:\/\/www.embl.org\/groups\/sample-preparation-characterisation\/wp-json\/wp\/v2\/pages\/109","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.embl.org\/groups\/sample-preparation-characterisation\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.embl.org\/groups\/sample-preparation-characterisation\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.embl.org\/groups\/sample-preparation-characterisation\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.embl.org\/groups\/sample-preparation-characterisation\/wp-json\/wp\/v2\/comments?post=109"}],"version-history":[{"count":10,"href":"https:\/\/www.embl.org\/groups\/sample-preparation-characterisation\/wp-json\/wp\/v2\/pages\/109\/revisions"}],"predecessor-version":[{"id":660,"href":"https:\/\/www.embl.org\/groups\/sample-preparation-characterisation\/wp-json\/wp\/v2\/pages\/109\/revisions\/660"}],"wp:attachment":[{"href":"https:\/\/www.embl.org\/groups\/sample-preparation-characterisation\/wp-json\/wp\/v2\/media?parent=109"}],"wp:term":[{"taxonomy":"embl_taxonomy","embeddable":true,"href":"https:\/\/www.embl.org\/groups\/sample-preparation-characterisation\/wp-json\/wp\/v2\/embl_taxonomy?post=109"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}