{"id":186,"date":"2020-06-25T10:13:20","date_gmt":"2020-06-25T10:13:20","guid":{"rendered":"https:\/\/www.embl.org\/groups\/advanced-light-microscopy-service\/?page_id=186"},"modified":"2021-08-12T09:59:42","modified_gmt":"2021-08-12T09:59:42","slug":"downloads","status":"publish","type":"page","link":"https:\/\/www.embl.org\/groups\/advanced-light-microscopy-core-facility\/services\/downloads\/","title":{"rendered":"Downloads"},"content":{"rendered":"\n<div class=\"vf-grid | vf-grid__col-3\"><div class=\"vf-grid__col--span-2\"><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<h2 class=\"wp-block-heading\">Custom software, plugins and macros written by ALMF and CBA staff<\/h2>\n\n\n\n<ul class=\"wp-block-list\"><li><strong><a rel=\"noreferrer noopener\" href=\"https:\/\/bio-it.embl.de\/centres\/cba\/\" target=\"_blank\">Center for Bioimage Analyis tools<\/a> <\/strong>(e.g. MoBIE, BigDataProcessor2, PlateViewer, Elastix Wrapper, CATS, BigDataViewer-Playground)<\/li><li><a href=\"https:\/\/www.embl.org\/groups\/advanced-light-microscopy-core-facility\/services\/downloads\/detector-sensitivity-estimation-with-the-coefficient-of-variation-cv\/\">Confocal detector sensitivity characterisation <\/a>using the coefficient of variation (CV), macro for ImageJ<\/li><li><a href=\"https:\/\/www.embl.org\/groups\/advanced-light-microscopy-core-facility\/services\/downloads\/detector-characterization\/\">Detector characterization <\/a>macro set for ImageJ<\/li><\/ul>\n\n\n\n<h2 class=\"wp-block-heading\">Image analysis and visualisation<\/h2>\n\n\n\n<ul class=\"wp-block-list\"><li><a rel=\"noreferrer noopener\" href=\"http:\/\/fiji.sc\/\" target=\"_blank\">FiJi<\/a> (based on <a rel=\"noreferrer noopener\" href=\"http:\/\/rsb.info.nih.gov\/ij\/index.html\" target=\"_blank\">ImageJ<\/a>) &#8211; Open source image analysis software with large user and developer community.<\/li><li><a rel=\"noreferrer noopener\" href=\"http:\/\/www.cellprofiler.org\/\" target=\"_blank\">Cellprofiler<\/a> &#8211; Open source image analysis for large datasets (high-throughput)<\/li><li>Imaris (<a rel=\"noreferrer noopener\" href=\"http:\/\/www.bitplane.com\/\" target=\"_blank\">Bitplane<\/a> \/ Andor): Commercial 4D analysis and visualization tool. We offer several floating licenses.<\/li><li>Huygens professional (SVI): Commercial deconvolution, stitching and fusion tool. We offer several floating licenses.<\/li><\/ul>\n\n\n\n<h2 class=\"wp-block-heading\">Viewer of microscopy companies<\/h2>\n\n\n\n<ul class=\"wp-block-list\"><li><a rel=\"noreferrer noopener\" href=\"http:\/\/www.leica-microsystems.com\/products\/microscope-software\/life-sciences\/las-af-advanced-fluorescence\/\" target=\"_blank\">Leica LASAF lite<\/a><\/li><li><a rel=\"noreferrer noopener\" href=\"http:\/\/www.zeiss.com\/zen\" target=\"_blank\">Zeiss Zen LE<\/a>&nbsp;<\/li><\/ul>\n\n\n\n<h2 class=\"wp-block-heading\">FRAP analysis<\/h2>\n\n\n\n<ul class=\"wp-block-list\"><li><a rel=\"noreferrer noopener\" href=\"https:\/\/github.com\/ssgpers\/FRAPAnalalyser\" target=\"_blank\">FRAPAnalyser<\/a> (A. Halavatyi, M. Yatskou, E. Friederich, University of Luxembourg)<\/li><li><a rel=\"noreferrer noopener\" href=\"https:\/\/doi.org\/10.1093\/nar\/gky508\" target=\"_blank\">EasyFRAP<\/a> (Koulouras et al 2018, University of Patras, Greece)<\/li><\/ul>\n\n\n\n<h2 class=\"wp-block-heading\"><\/h2>\n\n<\/div>\n<\/div>\n\n\n<div><!--[vf\/content]-->\n<div class=\"vf-content\">\n<div class=\"vf-links\">\n      <h3 class=\"vf-links__heading\">Image and data analysis services<\/h3>\n    <ul class=\"vf-links__list vf-list\">\n    <li class=\"vf-list__item\">\n          <a class=\"vf-list__link\" href=\"https:\/\/www.embl.org\/groups\/advanced-light-microscopy-core-facility\/services\/image-and-data-analysis\/\">\n        image and data analysis      <\/a>\n      <\/li>\n    <li class=\"vf-list__item\">\n          <a class=\"vf-list__link\" href=\"https:\/\/www.embl.org\/topics\/embl-centres\/#cba\">\n        Center for Bioimage Analysis      <\/a>\n      <\/li>\n    <li class=\"vf-list__item\">\n          <a class=\"vf-list__link\" href=\"https:\/\/www.embl.org\/groups\/advanced-light-microscopy-core-facility\/services\/image-and-data-analysis\/almf-embl-3dcloud-vms\/\">\n        ALMF 3D cloud VMs      <\/a>\n      <\/li>\n    <li class=\"vf-list__item\">\n          <a class=\"vf-list__link\" href=\"https:\/\/www.embl.org\/groups\/advanced-light-microscopy-core-facility\/services\/image-and-data-analysis\/imaris\/\">\n        imaris      <\/a>\n      <\/li>\n  <\/ul>\n\n<\/div>\n\n<\/div>\n<\/div>\n<\/div>\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":2,"featured_media":0,"parent":114,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"template-title-left-aligned.php","meta":{"_acf_changed":false,"footnotes":""},"embl_taxonomy":[],"class_list":["post-186","page","type-page","status-publish","hentry"],"acf":[],"embl_taxonomy_terms":[],"_links":{"self":[{"href":"https:\/\/www.embl.org\/groups\/advanced-light-microscopy-core-facility\/wp-json\/wp\/v2\/pages\/186","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.embl.org\/groups\/advanced-light-microscopy-core-facility\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.embl.org\/groups\/advanced-light-microscopy-core-facility\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.embl.org\/groups\/advanced-light-microscopy-core-facility\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/www.embl.org\/groups\/advanced-light-microscopy-core-facility\/wp-json\/wp\/v2\/comments?post=186"}],"version-history":[{"count":16,"href":"https:\/\/www.embl.org\/groups\/advanced-light-microscopy-core-facility\/wp-json\/wp\/v2\/pages\/186\/revisions"}],"predecessor-version":[{"id":1766,"href":"https:\/\/www.embl.org\/groups\/advanced-light-microscopy-core-facility\/wp-json\/wp\/v2\/pages\/186\/revisions\/1766"}],"up":[{"embeddable":true,"href":"https:\/\/www.embl.org\/groups\/advanced-light-microscopy-core-facility\/wp-json\/wp\/v2\/pages\/114"}],"wp:attachment":[{"href":"https:\/\/www.embl.org\/groups\/advanced-light-microscopy-core-facility\/wp-json\/wp\/v2\/media?parent=186"}],"wp:term":[{"taxonomy":"embl_taxonomy","embeddable":true,"href":"https:\/\/www.embl.org\/groups\/advanced-light-microscopy-core-facility\/wp-json\/wp\/v2\/embl_taxonomy?post=186"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}