Drugst.One - A plug-and-play solution for online systems medicine and network-based drug repurposing.

Maier A, Hartung M, Abovsky M, Adamowicz K, Bader GD, Baier S, Blumenthal DB, Chen J, Elkjaer ML, Garcia-Hernandez C, Helmy M, Hoffmann M, Jurisica I, Kotlyar M, Lazareva O, Levi H, List M, Lobentanzer S, Loscalzo J, Malod-Dognin N, Manz Q, Matschinske J, Mee M, Oubounyt M, Pico AR, Pillich RT, Poschenrieder JM, Pratt D, Pržulj N, Sadegh S, Saez-Rodriguez J, Sarkar S, Shaked G, Shamir R, Trummer N, Turhan U, Wang R, Zolotareva O, Baumbach J

arXiv, 2023

doi:10.1093/nar/gkae388.

Lipid network and moiety analysis for revealing enzymatic dysregulation and mechanistic alterations from lipidomics data.

Rose TD, Köhler N, Falk L, Klischat L, Lazareva OE, Pauling JK

Briefings in bioinformatics, 2023

doi:10.1093/bib/bbac572.

TF-Prioritizer: a Java pipeline to prioritize condition-specific transcription factors.

Hoffmann M, Trummer N, Schwartz L, Jankowski J, Lee HK, Willruth LL, Lazareva O, Yuan K, Baumgarten N, Schmidt F, Baumbach J, Schulz MH, Blumenthal DB, Hennighausen L, List M

GigaScience, 2022

doi:10.1093/gigascience/giad026.