Recurrent frameshift neoantigen vaccine elicits protective immunity with reduced tumor burden and improved overall survival in a Lynch syndrome mouse model.

Gebert J, Gelincik O, Oezcan-Wahlbrink M, Marshall JD, Hernandez-Sanchez A, Urban K, Long M, Cortes E, Tosti E, Katzenmaier EM, Song Y, Elsaadi A, Deng N, Vilar E, Fuchs V, Nelius N, Yuan, Ahadova A, Sei S, Shoemaker RH, Umar A, Wei L, Liu S, Bork P, Edelmann W, von Knebel Doeberitz M, Lipkin SM, Kloor M

Gastroenterology, 2021

doi:10.1053/j.gastro.2021.06.073.

(Phospho)proteomic profiling of microsatellite unstable CRC cells reveals alterations in nuclear signaling and cholesterol metabolism caused by frameshift mutation of NMD regulator UPF3A.

Michalak M, Katzenmaier EM, Roeckel N, Woerner SM, Fuchs V, Warnken U, Yuan YP, Bork P, Neu-Yilik G, Kulozik A, von Knebel Doeberitz M, Kloor M, Kopitz J, Gebert J

International journal of molecular sciences, 2020

doi:10.3390/ijms21155234.

Detection of coding microsatellite frameshift mutations in DNA mismatch repair-deficient mouse intestinal tumors

Woerner SM, Tosti E, Yuan YP, Kloor M, Bork P, Edelmann W, Gebert J

Molecular carcinogenesis, 2014

doi:10.1002/mc.22213.

SelTarbase, a database of human mononucleotide-microsatellite mutations and their potential impact to tumorigenesis and immunology

Woerner SM, Yuan YP, Benner A, Korff S, von Knebel Doeberitz M, Bork P

Nucleic acids research, 2010

doi:10.1093/nar/gkp839.

High frequency of LMAN1 abnormalities in colorectal tumors with microsatellite instability

Roeckel N, Woerner SM, Kloor M, Yuan YP, Patsos G, Gromes R, Kopitz J, Gebert J

Cancer research, 2009

doi:10.1158/0008-5472.can-08-3314.

Frameshift mutations in coding repeats of protein tyrosine phosphatase genes in colorectal tumors with microsatellite instability

Korff S, Woerner SM, Yuan YP, Bork P, von Knebel Doeberitz M, Gebert J

BMC cancer, 2008

doi:10.1186/1471-2407-8-329.

Pathogenesis of DNA repair-deficient cancers: a statistical meta-analysis of putative Real Common Target genes

Woerner SM, Benner A, Sutter C, Schiller M, Yuan YP, Keller G, Bork P, Doeberitz Mv, Gebert JF

Oncogene, 2003

doi:10.1038/sj.onc.1206421.

HGVbase: a human sequence variation database emphasizing data quality and a broad spectrum of data sources

Fredman D, Siegfried M, Yuan YP, Bork P, Lehväslaiho H, Brookes AJ

Nucleic acids research, 2002

doi:10.1093/nar/30.1.387.

Frameshift peptide-derived T-cell epitopes: a source of novel tumor-specific antigens

Linnebacher M, Gebert J, Rudy W, Woerner S, Yuan YP, Bork P, von Knebel Doeberitz M

International journal of cancer. Journal international du cancer, 2001

doi:10.1002/ijc.1298.

Systematic identification of genes with coding microsatellites mutated in DNA mismatch repair-deficient cancer cells

Woerner SM, Gebert J, Yuan YP, Sutter C, Ridder R, Bork P, von Knebel Doeberitz M

International journal of cancer. Journal international du cancer, 2001

doi:10.1002/ijc.1299.

Re-annotating the Mycoplasma pneumoniae genome sequence: adding value, function and reading frames

Dandekar T, Huynen M, Regula JT, Ueberle B, Zimmermann CU, Andrade MA, Doerks T, Sánchez-Pulido L, Snel B, Suyama M, Yuan YP, Herrmann R, Bork P

Nucleic acids research, 2000

doi:10.1093/nar/28.17.3278.

Automated annotation of GPI anchor sites: case study C. elegans.

Eisenhaber B, Bork P, Yuan YP, Löffler G, Eisenhaber F

2000

doi:10.1016/S0968-0004(00)01601-7.

NAIL-Network Analysis Interface for Linking HMMER results

Sánchez-Pulido L, Yuan YP, Andrade MA, Bork P

Bioinformatics (Oxford, England), 2000

doi:10.1093/bioinformatics/16.7.656.

HGBASE: a database of SNPs and other variations in and around human genes

Brookes AJ, Lehväslaiho H, Siegfried M, Boehm JG, Yuan YP, Sarkar CM, Bork P, Ortigao F

Nucleic acids research, 2000

doi:10.1093/nar/28.1.356.

Predicting function: from genes to genomes and back

Bork P, Dandekar T, Diaz-Lazcoz Y, Eisenhaber F, Huynen M, Yuan Y

Journal of molecular biology, 1998

doi:10.1006/jmbi.1998.2144.

Homology-based fold predictions for Mycoplasma genitalium proteins

Huynen M, Doerks T, Eisenhaber F, Orengo C, Sunyaev S, Yuan Y, Bork P

Journal of molecular biology, 1998

doi:10.1006/jmbi.1998.1884.

Towards detection of orthologues in sequence databases

Yuan YP, Eulenstein O, Vingron M, Bork P

Bioinformatics (Oxford, England), 1998

doi:10.1093/bioinformatics/14.3.285.

Secreted fringe-like signaling molecules may be glycosyltransferases

Yuan YP, Schultz J, Mlodzik M, Bork P

Cell, 1997

doi:10.1016/s0092-8674(00)81852-8.