Challenges and advances in optical 3D mesoscale imaging.

Munck S, Cawthorne C, Escamilla-Ayala A, Kerstens A, Gabarre S, Wesencraft K, Battistella E, Craig R, Reynaud EG, Swoger J, McConnell G

Journal of microscopy, 2022

doi:10.1111/jmi.13109.

Maximizing content across scales: moving multimodal microscopy and mesoscopy toward molecular imaging.

Munck S, Swoger J, Coll-Lladó M, Gritti N, Vande Velde G

Current opinion in chemical biology, 2021

doi:10.1016/j.cbpa.2021.05.003.

REMBI: recommended metadata for biological images-enabling reuse of microscopy data in biology.

Sarkans U, Chiu W, Collinson L, Darrow MC, Ellenberg J, Grunwald D, Hériché JK, Iudin A, Martins GG, Meehan T, Narayan K, Patwardhan A, Russell MRG, Saibil HR, Strambio-De-Castillia C, Swedlow JR, Tischer C, Uhlmann V, Verkade P, Barlow M, Bayraktar O, Birney E, Catavitello C, Cawthorne C, Wagner-Conrad S, Duke E, Paul-Gilloteaux P, Gustin E, Harkiolaki M, Kankaanpää P, Lemberger T, McEntyre J, Moore J, Nicholls AW, Onami S, Parkinson H, Parsons M, Romanchikova M, Sofroniew N, Swoger J, Utz N, Voortman LM, Wong F, Zhang P, Kleywegt GJ, Brazma A

Nature methods, 2021

doi:10.1038/s41592-021-01166-8.

Born with bristles: new insights on the Kolliker's organs of octopus skin.

Villanueva R, Coll-Llado M, Bonnaud-Ponticelli L, Carrasco SA, Escolar O, Fernandez-Alvarez FA, Gleadall IG, Nabhitabhata J, Ortiz N, Rosas C, Sanchez P, Voight JR, Swoger J

FRONTIERS IN MARINE SCIENCE, 2021

doi:10.3389/fmars.2021.645738.

From mouse to man and back: Closing the correlation gap between imaging and histopathology for lung diseases.

Tielemans B, Dekoster K, Verleden SE, Sawall S, Leszczyński B, Laperre K, Vanstapel A, Verschakelen J, Kachelriess M, Verbeken E, Swoger J, Vande Velde G

Diagnostics (Basel, Switzerland), 2020

doi:10.3390/diagnostics10090636.

Attenuation artifacts in light sheet fluorescence microscopy corrected by OPTiSPIM.

Mayer J, Robert-Moreno A, Sharpe J, Swoger J

Light, science & applications, 2018

doi:10.1038/s41377-018-0068-z.

Quantification of gene expression patterns to reveal the origins of abnormal morphogenesis.

Martínez-Abadías N, Mateu Estivill R, Sastre Tomas J, Motch Perrine S, Yoon M, Robert-Moreno A, Swoger J, Russo L, Kawasaki K, Richtsmeier J, Sharpe J

eLife, 2018

doi:10.7554/eLife.36405.

pMHC affinity controls duration of CD8+ T cell-DC interactions and imprints timing of effector differentiation versus expansion.

Ozga AJ, Moalli F, Abe J, Swoger J, Sharpe J, Zehn D, Kreutzfeldt M, Merkler D, Ripoll J, Stein JV

The Journal of experimental medicine, 2016

doi:10.1084/jem.20160206.

Decrease in Cell Volume Generates Contractile Forces Driving Dorsal Closure.

Saias L, Swoger J, D'Angelo A, Hayes P, Colombelli J, Sharpe J, Salbreux G, Solon J

Developmental cell, 2015

doi:10.1016/j.devcel.2015.03.016.

OPTiSPIM: integrating optical projection tomography in light sheet microscopy extends specimen characterization to nonfluorescent contrasts.

Mayer J, Robert-Moreno A, Danuser R, Stein JV, Sharpe J, Swoger J

Optics letters, 2014

doi:10.1364/OL.39.001053.

Intravital imaging of hair-cell development and regeneration in the zebrafish.

Pinto-Teixeira F, Muzzopappa M, Swoger J, Mineo A, Sharpe J, López-Schier H

Frontiers in neuroanatomy, 2013

doi:10.3389/fnana.2013.00033.

Naive B-cell trafficking is shaped by local chemokine availability and LFA-1-independent stromal interactions.

Coelho FM, Natale D, Soriano SF, Hons M, Swoger J, Mayer J, Danuser R, Scandella E, Pieczyk M, Zerwes HG, Junt T, Sailer AW, Ludewig B, Sharpe J, Figge MT, Stein JV

Blood, 2013

doi:10.1182/blood-2012-10-465336.

Quantitative measurements in 3-dimensional datasets of mouse lymph nodes resolve organ-wide functional dependencies.

Mayer J, Swoger J, Ozga AJ, Stein JV, Sharpe J

Computational and mathematical methods in medicine, 2012

doi:10.1155/2012/128431.

Image formation by linear and nonlinear digital scanned light-sheet fluorescence microscopy with Gaussian and Bessel beam profiles.

Olarte OE, Licea-Rodriguez J, Palero JA, Gualda EJ, Artigas D, Mayer J, Swoger J, Sharpe J, Rocha-Mendoza I, Rangel-Rojo R, Loza-Alvarez P

Biomedical optics express, 2012

doi:10.1364/BOE.3.001492.

The future of three-dimensional microscopic imaging in marine biology

Boistel R, Swoger J, Krzic U, Fernandez V, Gillet B, Reynaud EG

Marine ecology (Berlin, Germany), 2011

doi:10.1111/j.1439-0485.2011.00442.x.

4D retrospective lineage tracing using SPIM for zebrafish organogenesis studies

Swoger J, Muzzopappa M, Lopez-Schier H, Sharpe J

JOURNAL OF BIOPHOTONICS, 2011

doi:10.1002/jbio.201000087.

The role of spatially controlled cell proliferation in limb bud morphogenesis.

Boehm B, Westerberg H, Lesnicar-Pucko G, Raja S, Rautschka M, Cotterell J, Swoger J, Sharpe J

PLOS BIOLOGY, 2010

doi:10.1371/journal.pbio.1000420.

Fluorescence lifetime optical projection tomography

McGinty J, Tahir KR, Laine R, Talbot CB, Dunsby C, Neil MAA, Quintana L, Swoger J, Sharpe J, French PMW

JOURNAL OF BIOPHOTONICS, 2008

doi:10.1002/jbio.200810044.

Multi-view image fusion improves resolution in three-dimensional microscopy

Swoger J, Verveer P, Greger K, Huisken J, Stelzer EH

Optics express, 2007

doi:10.1364/oe.15.008029.

Three-dimensional optical manipulation using four collimated intersecting laser beams

Huisken J, Swoger J, Stelzer EH

Optics express, 2007

doi:10.1364/oe.15.004921.

High-resolution three-dimensional imaging of large specimens with light sheet-based microscopy

Verveer PJ, Swoger J, Pampaloni F, Greger K, Marcello M, Stelzer EH

Nature methods, 2007

doi:10.1038/nmeth1017.

Basic building units and properties of a fluorescence single plane illumination microscope

Greger K, Swoger J, Stelzer EH

The Review of scientific instruments, 2007

doi:10.1063/1.2428277.

Optical sectioning deep inside live embryos by selective plane illumination microscopy

Huisken J, Swoger J, Del Bene F, Wittbrodt J, Stelzer EH

Science (New York, N.Y.), 2004

doi:10.1126/science.1100035.

Active particle manipulation with four laser beams.

Huisken J, Swoger J, Stelzer EHK

2004

doi:10.1117/12.529171.

Multiple imaging axis microscopy improves resolution for thick-sample applications

Swoger J, Huisken J, Stelzer EH

Optics letters, 2003

doi:10.1364/ol.28.001654.

Resolution in optical microscopy

Jonkman JE, Swoger J, Kress H, Rohrbach A, Stelzer EH

Methods in enzymology, 2003

doi:10.1016/s0076-6879(03)60122-9.

Optical scanning holography as a technique for high-resolution three-dimensional biological microscopy

Swoger J, Martínez-Corral M, Huisken J, Stelzer EH

Journal of the Optical Society of America. A, Optics, image science, and vision, 2002

doi:10.1364/josaa.19.001910.

Tailoring the axial shape of the point spread function using the Toraldo concept

Martinez-Corral M, Caballero M, Stelzer EH, Swoger J

Optics express, 2002

doi:10.1364/OE.10.000098.

Developments and applications of confocal theta microscopy.

Haar FM, Swoger J, Stelzer EHK

1999

doi:10.1117/12.347589.

Modelling of optical pumping in split-electrode semiconductor lasers

Swoger JH, Simmons JG, Thompson DA

IEE Proceedings Optoelectronics, 1999

doi:10.1049/ip-opt:19990577.

Single-lens theta microscopy: resolution, efficiency and working distance

Lindek S, Swoger J, Stelzer EHK

Journal of Modern Optics, 1999

doi:10.1080/09500349908231308.

Modelling of self-sustained pulsations in non-uniformly pumped semiconductor lasers

Swoger JH, Simmons JG, Thompson DA

IEE PROCEEDINGS-OPTOELECTRONICS, 1998

doi:10.1049/ip-opt:19982142.

A confocal fiber-coupled single-lens theta microscope

Swoger J, Lindek S, Stefany T, Haar FM, Stelzer EHK

REVIEW OF SCIENTIFIC INSTRUMENTS, 1998

doi:10.1063/1.1149040.

Spontaneous oscillations in the InP-InGaAsP lasing optoelectronic switch (LOES)

Swoger JH, Simmons JG, Shepherd FR, Thompson DA, Beckett D, Cleroux MN

IEEE Journal of Quantum Electronics, 1995

doi:10.1109/3.391096.

Strained layer (1.5 μm) InP/InGaAsP lasing opto-electronic switch (LOES)

Swoger JH, Qiu C, Simmons JG, Thompson DA, Shepherd F, Beckett D, Cleroux

IEEE Photonics Technology Letters, 1994

doi:10.1109/68.313054.

Enhanced luminescence due to impact ionization in photodiodes.

Swoger JH, Kovacic SJ

JOURNAL OF APPLIED PHYSICS, 1993

doi:10.1063/1.354702.

Electrical and optical properties of the four-terminal double-heterostructure opto-electronic switch

Swoger J, Simmons JG

IEEE Transactions on Electron Devices, 1993

doi:10.1109/16.214731.

On transconductance in the p-channel Si/SiGe heteroj unction field effect transistor

Kovacic SJ, Ojha JJ, Swoger JH, Simmons JG, Noël J-P, Houghton DC

Canadian Journal of Physics, 1992

doi:10.1139/p92-154.