Systematic analysis of RNA-binding proteins identifies targetable therapeutic vulnerabilities in osteosarcoma.

Zhou Y, Ray PS, Zhu J, Stein F, Rettel M, Sekaran T, Sahadevan S, Perez-Perri JI, Roth EK, Myklebost O, Meza-Zepeda LA, von Deimling A, Fu C, Brosig AN, Boye K, Nathrath M, Blattmann C, Lehner B, Hentze MW, Kulozik AE

Nature communications, 2024

doi:10.1038/s41467-024-47031-y.

Improved discovery of RNA-binding protein binding sites in eCLIP data using DEWSeq.

Schwarzl T, Sahadevan S, Lang B, Miladi M, Backofen R, Huber W, Hentze MW, Tartaglia GG

Nucleic acids research, 2023

doi:10.1093/nar/gkad998.

The RNA-binding protein landscapes differ between mammalian organs and cultured cells.

Perez-Perri JI, Ferring-Appel D, Huppertz I, Schwarzl T, Sahadevan S, Stein F, Rettel M, Galy B, Hentze MW

Nature communications, 2023

doi:10.1038/s41467-023-37494-w.

Global gene regulatory network underlying miR165a in Arabidopsis shoot apical meristem

Sinha S, Sahadevan S, Ohno C, Ram H, Heisler M

Scientific reports, 2023

doi:.

A Pipeline for Analyzing eCLIP and iCLIP Data with Htseq-clip and DEWSeq.

Sahadevan S, Sekaran T, Schwarzl T

Methods in molecular biology (Clifton, N.J.), 2022

doi:10.1007/978-1-0716-1851-6_10.

Small non-coding RNA Interactome Capture reveals pervasive, carbon source-dependent tRNA engagement of yeast glycolytic enzymes.

Asencio C, Schwarzl T, Sahadevan S, Hentze MW

RNA (New York, N.Y.), 2022

doi:10.1261/rna.079408.122.

Htseq-clip: a toolset for the preprocessing of eCLIP/iCLIP datasets.

Sahadevan S, Sekaran T, Ashaf N, Fritz M, Hentze MW, Huber W, Schwarzl T

Bioinformatics (Oxford, England), 2022

doi:10.1093/bioinformatics/btac747.

An integrated analysis of cell-type specific gene expression reveals genes regulated by REVOLUTA and KANADI1 in the Arabidopsis shoot apical meristem.

Ram H, Sahadevan S, Gale N, Caggiano MP, Yu X, Ohno C, Heisler MG

PLoS genetics, 2020

doi:10.1371/journal.pgen.1008661.

Exploring novel mechanistic insights in Alzheimer's disease by assessing reliability of protein interactions

Malhotra A, Younesi E, Sahadevan S, Zimmermann J, Hofmann-Apitius M

SCIENTIFIC REPORTS, 2015

doi:10.1038/srep13634.