Ferritin heavy chain supports stability and function of the regulatory T cell lineage.

Wu Q, Carlos AR, Braza F, Bergman ML, Kitoko JZ, Bastos-Amador P, Cuadrado E, Martins R, Oliveira BS, Martins VC, Scicluna BP, Landry JJ, Jung FE, Ademolue TW, Peitzsch M, Almeida-Santos J, Thompson J, Cardoso S, Ventura P, Slot M, Rontogianni S, Ribeiro V, Domingues VDS, Cabral IA, Weis S, Groth M, Ameneiro C, Fidalgo M, Wang F, Demengeot J, Amsen D, Soares MP

The EMBO journal, 2024

doi:10.1038/s44318-024-00064-x.

Co-translational binding of importins to nascent proteins.

Seidel M, Romanov N, Obarska-Kosinska A, Becker A, Trevisan Doimo de Azevedo N, Provaznik J, Nagaraja SR, Landry JJM, Benes V, Beck M

Nature communications, 2023

doi:10.1038/s41467-023-39150-9.

Clonally resolved single-cell multi-omics identifies routes of cellular differentiation in acute myeloid leukemia.

Beneyto-Calabuig S, Merbach AK, Kniffka JA, Antes M, Szu-Tu C, Rohde C, Waclawiczek A, Stelmach P, Gräßle S, Pervan P, Janssen M, Landry JJM, Benes V, Jauch A, Brough M, Bauer M, Besenbeck B, Felden J, Bäumer S, Hundemer M, Sauer T, Pabst C, Wickenhauser C, Angenendt L, Schliemann C, Trumpp A, Haas S, Scherer M, Raffel S, Müller-Tidow C, Velten L

Cell stem cell, 2023

doi:10.1016/j.stem.2023.04.001.

Microbe-mediated intestinal NOD2 stimulation improves linear growth of undernourished infant mice.

Schwarzer M, Gautam UK, Makki K, Lambert A, Brabec T, Joly A, Šrůtková D, Poinsot P, Novotná T, Geoffroy S, Courtin P, Hermanová PP, Matos RC, Landry JJM, Gérard C, Bulteau AL, Hudcovic T, Kozáková H, Filipp D, Chapot-Chartier MP, Šinkora M, Peretti N, Boneca IG, Chamaillard M, Vidal H, De Vadder F, Leulier F

Science (New York, N.Y.), 2023

doi:10.1126/science.ade9767.

Combi-seq for multiplexed transcriptome-based profiling of drug combinations using deterministic barcoding in single-cell droplets.

Mathur L, Szalai B, Du NH, Utharala R, Ballinger M, Landry JJM, Ryckelynck M, Benes V, Saez-Rodriguez J, Merten CA

Nature communications, 2022

doi:10.1038/s41467-022-32197-0.

Regulation of the COPII secretory machinery via focal adhesions and extracellular matrix signaling.

Jung J, Khan MM, Landry J, Halavatyi A, Machado P, Reiss M, Pepperkok R

The Journal of cell biology, 2022

doi:10.1083/jcb.202110081.

Neuropathic pain caused by miswiring and abnormal end organ targeting.

Gangadharan V, Zheng H, Taberner FJ, Landry J, Nees TA, Pistolic J, Agarwal N, Männich D, Benes V, Helmstaedter M, Ommer B, Lechner SG, Kuner T, Kuner R

Nature, 2022

doi:10.1038/s41586-022-04777-z.

Identification of fibroblast progenitors in the developing thymus.

Ferreirinha P, Pinheiro R, Landry JJM, Alves NL

Development (Cambridge, England), 2022

doi:10.1242/dev.200513.

Glucose metabolism and aging of hematopoietic stem and progenitor cells.

Poisa-Beiro L, Landry JJM, Raffel S, Tanaka M, Zaugg J, Gavin AC, Ho AD

International journal of molecular sciences, 2022

doi:10.3390/ijms23063028.

Co-translational assembly orchestrates competing biogenesis pathways.

Seidel M, Becker A, Pereira F, Landry JJM, de Azevedo NTD, Fusco CM, Kaindl E, Romanov N, Baumbach J, Langer JD, Schuman EM, Patil KR, Hummer G, Benes V, Beck M

Nature communications, 2022

doi:10.1038/s41467-022-28878-5.

The expansion of human T-bethighCD21low B cells is T cell dependent.

Keller B, Strohmeier V, Harder I, Unger S, Payne KJ, Andrieux G, Boerries M, Felixberger PT, Landry JJM, Nieters A, Rensing-Ehl A, Salzer U, Frede N, Usadel S, Elling R, Speckmann C, Hainmann I, Ralph E, Gilmour K, Wentink MWJ, van der Burg M, Kuehn HS, Rosenzweig SD, Kölsch U, von Bernuth H, Kaiser-Labusch P, Gothe F, Hambleton S, Vlagea AD, Garcia Garcia A, Alsina L, Markelj G, Avcin T, Vasconcelos J, Guedes M, Ding JY, Ku CL, Shadur B, Avery DT, Venhoff N, Thiel J, Becker H, Erazo-Borrás L, Trujillo-Vargas CM, Franco JL, Fieschi C, Okada S, Gray PE, Uzel G, Casanova JL, Fliegauf M, Grimbacher B, Eibel H, Ehl S, Voll RE, Rizzi M, Stepensky P, Benes V, Ma CS, Bossen C, Tangye SG, Warnatz K

Science immunology, 2021

doi:10.1126/sciimmunol.abh0891.

Combi-Seq: multiplexed transcriptome-based profiling of drug combinations using deterministic barcoding in single-cell droplets.

Mathur L, Szalai B, Utharala R, Ballinger M, Landry JJM, Ryckelynck M, Benes V, Saez-Rodriguez J, Merten CA

bioRxiv, 2021

doi:10.1101/2021.09.16.460212.

Metagenomic analysis of primary colorectal carcinomas and their metastases identifies potential microbial risk factors.

Marongiu L, Landry JJM, Rausch T, Abba ML, Delecluse S, Delecluse HJ, Allgayer H

Molecular oncology, 2021

doi:10.1002/1878-0261.13070.

Co-translational assembly counteracts promiscuous interactions.

Seidel M, Becker A, Pereira F, Landry JJM, de Azevedo NTD, Fusco CM, Kaindl E, Baumbach J, Langer JD, Schuman EM, Patil KR, Hummer G, Benes V, Beck M

bioRxiv, 2021

doi:10.1101/2021.07.13.452229.

AXL inhibition in macrophages stimulates host-versus-leukemia immunity and eradicates naive and treatment resistant leukemia.

Tirado-Gonzalez I, Descot A, Soetopo D, Nevmerzhitskaya A, Schaffer A, Kur IM, Czlonka E, Wachtel C, Tsoukala I, Muller L, Schafer AL, Weitmann M, Dinse P, Alberto E, Buck MC, Landry JJM, Baying B, Slotta-Huspenina J, Roesler J, Harter PN, Kubasch AS, Meinel J, Elwakeel E, Strack E, Tran Quang C, Abdel-Wahab O, Schmitz M, Weigert A, Schmid T, Platzbecker U, Benes V, Ghysdael J, Bonig H, Gotze KS, Rothlin CV, Ghosh S, Medyouf H

Cancer discovery, 2021

doi:10.1158/2159-8290.CD-20-1378.

Glucocorticoids exacerbate TGFß1 mediated fibrotic signalling in lung fibroblasts by inhibition of metalloproteinase expression and activity.

Khan MM, Zukowska-Kasprzyk J, Neumann B, Halavatyi A, Tischer C, Haberkant P, Stein F, Jung F, Landry J, Lewis J, Pepperkok R

ERJ open research, 2021

doi:10.1183/23120541.lsc-2021.33.

USP42 protects ZNRF3/RNF43 from R-spondin-dependent clearance and inhibits Wnt signalling.

Giebel N, de Jaime-Soguero A, García Del Arco A, Landry JJM, Tietje M, Villacorta L, Benes V, Fernández-Sáiz V, Acebrón SP

EMBO reports, 2021

doi:10.15252/embr.202051415.

Versatile workflow for cell-type resolved transcriptional and epigenetic profiles from cryopreserved human lung.

Llamazares Prada M, Espinet E, Mijošek V, Schwartz U, Lutsik P, Tamas R, Richter M, Behrendt A, Pohl ST, Benz NP, Muley T, Warth A, Heußel CP, Winter H, Landry JJM, Herth FJ, Mertens TC, Karmouty-Quintana H, Koch I, Benes V, Korbel JO, Waszak SM, Trumpp A, Wyatt DM, Stahl HF, Plass C, Jurkowska RZ

JCI insight, 2021

doi:10.1172/jci.insight.140443.

Extensive OMICS resource for Sf21 and Tni cell lines.

Galik B, Landry JM, Kirkpatrick J, Fritz M, Baying B, Blake J, Haase B, Collier PG, Hercog R, Pavlinic D, Stolt-Bergner P, Besir H, Remans K, Gyenesei A, Benes V

2021

doi:10.1101/2021.04.06.438574.

A high throughput SEC23 functional interaction screen reveals a role for focal adhesion and extracellular matrix signalling in the regulation of COPII subunit SEC23A

Jung J, Khan MM, Landry J, Halavatyi A, Machado P, Reiss M, Pepperkok R

2021

doi:10.1101/2021.03.16.435679.

A novel method to identify post-aire stages of medullary thymic epithelial cell differentiation.

Ferreirinha P, Ribeiro C, Morimoto J, Landry JJM, Matsumoto M, Meireles C, White AJ, Ohigashi I, Araújo L, Benes V, Takahama Y, Anderson G, Matsumoto M, Alves N

European journal of immunology, 2020

doi:10.1002/eji.202048764.

In situ structural analysis of SARS-CoV-2 spike reveals flexibility mediated by three hinges.

Turoňová B, Sikora M, Schürmann C, Hagen WJH, Welsch S, Blanc FEC, von Bülow S, Gecht M, Bagola K, Hörner C, van Zandbergen G, Landry J, de Azevedo NTD, Mosalaganti S, Schwarz A, Covino R, Mühlebach MD, Hummer G, Krijnse Locker J, Beck M

Science (New York, N.Y.), 2020

doi:10.1126/science.abd5223.

Glycogen accumulation, central carbon metabolism, and aging of hematopoietic stem and progenitor cells.

Poisa-Beiro L, Thoma J, Landry J, Sauer S, Yamamoto A, Eckstein V, Romanov N, Raffel S, Hoffmann GF, Bork P, Benes V, Gavin AC, Tanaka M, Ho AD

2020

doi:10.1038/s41598-020-68396-2.

Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition).

Cossarizza A, Chang HD, Radbruch A, Acs A, Adam D, Adam-Klages S, Agace WW, Aghaeepour N, Akdis M, Allez M, Almeida LN, Alvisi G, Anderson G, Andrä I, Annunziato F, Bacher P, Anselmo A, Bari S, Baldari CT, Barros-Martins J, Barnaba V, Bauer W, Battistini L, Baumgarth N, Baumgart S, Baying B, Baumjohann D, Becher B, Bebawy M, Benes V, Beisker W, Boardman DA, Bogdan C, Beyaert R, Blanco A, Boulais PE, Bradford JA, Borger JG, Borsellino G, Brooks AES, Busch DH, Brenner D, Brinkman RR, Calzetti F, Cameron G, Büscher M, Bushnell TP, Casola S, Cardell SL, Cao X, Cammarata I, Chatenoud L, Celada A, Cavani A, Cassatella MA, Čičin-Šain L, Christakou E, Chow S, Chattopadhyay PK, Cooke A, Cook L, Colombo FS, Clerici M, Coulie PG, Cumano A, Cvetkovic L, Dang VD, Cooper AM, Corbett AJ, Cosma A, Cosmi L, Del Zotto G, Dela Cruz GV, Delacher M, Della Bella S, Dang-Heine C, Davey MS, Davies D, De Biasi S, Dieli F, Diefenbach A, Dörner T, Dolf A, Deniz G, Dellabona P, Di Santo JP, Dessing M, Eckle SBG, Ebner F, Eede P, Edinger M, Dudziak D, Dress RJ, Dutertre CA, Dustin M, Everts B, Evrard M, Erdei A, Esser C, Engel P, Engelhardt B, Ehrhardt GRA, Eich M, Filkor K, Fillatreau S, Feuerer M, Filby A, Felipo-Benavent M, Ferry H, Falk CS, Fehniger TA, Fritzsche W, Frischbutter S, Frenette PS, Frehse B, Foulds GA, Foster J, Förster I, Follo M, Gherardin NA, Gerner W, Geginat J, Gazzinelli RT, Gaudilliere B, Garbi N, Gangaev A, Galbraith DW, Grogan JL, Gori A, Grützkau A, Grummitt D, Hahn J, Haftmann C, Hämmerling G, Hammad H, Gibellini L, Ghoreschi K, Goda K, Ginhoux F, Goettlinger C, Godfrey DI, Goodyear CS, González-Navajas JM, Hernández DC, Herrera G, Herrmann M, Hess C, Höfer T, Hoffmann P, Hogquist K, Holland T, Hansmann L, Hansson G, Harpur CM, Hartmann S, Hauser A, Hauser AE, Haviland DL, Hedley D, Hwang WYK, Hunter CA, Hundemer M, Huehn J, Jäck HM, Ivison SM, Ingelfinger F, Iannone A, Houston JP, Hombrink P, Holmdahl R, Höllt T, Huber JE, Huang FP, Huang B, Hoyer BF, Khan S, Kisielow J, Ketelaars SLC, Khalilnezhad A, Koay HF, Kobow K, Klenerman P, Knopf J, Jonjic S, Kaiser T, Jani PK, Jávega B, Kaufmann SHE, Keller B, Kalina T, Kamradt T, Kurts C, Kurosaki T, Kwok I, Kvistborg P, Kukat C, Kühne J, Kunze-Schumacher H, Kunkel D, Kristyanto H, Kriegsmann K, Krueger A, Kroneis T, Kong WT, Kolls JK, Korn T, Kopf M, Liu Y, Ljunggren HG, Lohoff M, Lombardi G, Levings MK, Lino AC, Liotta F, Litwin V, Lehuen A, LeibundGut-Landmann S, Leipold MD, Leung LYT, Landry J, Lantz O, Lanuti P, LaRosa F, Marshall AJ, Manz RA, Mantovani A, Mair KH, Mair F, Maguire O, Maggi L, Maecker HT, Lunemann S, Lugli E, Ludewig B, Luche H, Lubberts E, Lovett-Racke AE, López-Botet M, Lopez L, Melzer S, Mielenz D, Mei HE, Melchers F, McGuire HM, McInnes IB, McCluskey J, McGrath M, Maueröder C, Mazzoni A, Matarese G, Mattioli AV, Marventano I, Maslinski W, Martínez-Romero A, Martrus G, O'Connor JE, Núñez G, Nourshargh S, Niedobitek A, Orfao A, Ordonez D, Oja A, Ochel A, Palankar R, Oxenius A, Ouyang W, Orlowski-Oliver E, Pavlinic D, Paulsen M, Pattanapanyasat K, Panse I, Minderman H, Mjösberg J, Miller SD, Mills KHG, Moretta L, Mosmann TR, Moore J, Moran B, Muñoz LE, Münz C, Müller S, Multhoff G, Neumann K, Ng LG, Nakayama T, Nasi M, Radbruch H, Quinn KM, Rahmig S, Radstake TRDJ, Rajwa B, Rahn HP, Raz Y, Ravichandran G, Recktenwald D, Rebhahn JA, Reis E Sousa C, Reimer D, Richter L, Remmerswaal EBM, Riddell A, Rico LG, Penter L, Peterson P, Peth C, Petriz J, Piancone F, Pickl WF, Piconese S, Pinti M, Pockley AG, Podolska MJ, Poon Z, Pracht K, Prinz I, Pucillo CEM, Quataert SA, Quatrini L, Schimisky E, Schildberg FA, Schiemann M, Scherer HU, Scheffold A, Schadt L, Sawitzki B, Sautes-Fridman C, Schüler T, Schuh W, Schraivogel D, Schober K, Schmitt S, Schmid S, Schlosser J, Schlitzer A, Saeys Y, Saito T, Ruland J, Saalmüller A, Romagnani C, Rubartelli A, Rieger AM, Robinson JP, Sanz RB, Saresella M, Sandrock I, Santoni A, Samstag Y, Sanderson S, Sakaguchi S, Sala-de-Oyanguren F, Takeda K, Takahama Y, Tárnok A, Tan L, Stehle C, Stark R, Stockinger H, Steinmetz T, Tree TIM, Trebak M, Trowsdale J, Trotter J, Toldi G, Tiegs G, Traggiai E, Tornack J, Scott-Algara D, Sester DP, Shankey TV, Silva-Santos B, Schulte R, Schulz AR, Schulz SR, Scottá C, Spidlen J, Stahlberg A, Stall AM, Stanley N, Simon AK, Sitnik KM, Sozzani S, Speiser DE, Waskow C, Watson JV, Warnes G, Warth S, Weisenburger T, Wiedemann A, Watzl C, Wegener L, Wallace PK, Wang SA, Waisman A, Walker RV, Ward-Hartstonge KA, Warnatz K, Wang XM, Ward MD, Vieira P, Vento-Asturias S, Veldhoen M, van Lier RAW, von Volkmann K, von Borstel A, Volk HD, Voehringer D, van de Veen W, Urbanczyk S, Ulrich H, Tsoumakidou M, Van Isterdael G, Van Gassen S, van der Pol E, van den Broek M, Zhao Y, Ziegler SM, Zielinski C, Zimmermann J, Zychlinsky A, Wurst P, Wong A, Yang J, Yang JHM, Yu L, Yazdanbakhsh M, Zhang H, Yue A, Wilharm A, Wienands J, Willimsky G, Wilkinson RJ, Winkelmann R, Wing JB, Wirz OF, Winkler TH

European journal of immunology, 2019

doi:10.1002/eji.201970107.

Apoptotic cell exclusion and bias-free single-cell selection are important quality control requirements for successful single-cell sequencing applications.

Ordoñez-Rueda D, Baying B, Pavlinic D, Alessandri L, Yeboah Y, Landry JJM, Calogero R, Benes V, Paulsen M

Cytometry. Part A : the journal of the International Society for Analytical Cytology, 2019

doi:10.1002/cyto.a.23898.

γδ-T cells promote IFN-γ-dependent Plasmodium pathogenesis upon liver-stage infection.

Ribot JC, Neres R, Zuzarte-Luís V, Gomes AQ, Mancio-Silva L, Mensurado S, Pinto-Neves D, Santos MM, Carvalho T, Landry JJM, Rolo EA, Malik A, Silva DV, Mota MM, Silva-Santos B, Pamplona A

Proceedings of the National Academy of Sciences of the United States of America, 2019

doi:10.1073/pnas.1814440116.

Unbiased classification of mosquito blood cells by single-cell genomics and high-content imaging.

Severo MS, Landry JJM, Lindquist RL, Goosmann C, Brinkmann V, Collier P, Hauser AE, Benes V, Henriksson J, Teichmann SA, Levashina EA

Proceedings of the National Academy of Sciences of the United States of America, 2018

doi:10.1073/pnas.1803062115.

Thymic epithelial cells require p53 to support their long-term function in thymopoiesis in mice.

Rodrigues PM, Ribeiro AR, Perrod C, Landry JJM, Araújo L, Pereira-Castro I, Benes V, Moreira A, Xavier-Ferreira H, Meireles C, Alves NL

Blood, 2017

doi:10.1182/blood-2016-12-758961.

Genetic code expansion for multiprotein complex engineering.

Koehler C, Sauter PF, Wawryszyn M, Girona GE, Gupta K, Landry JJ, Fritz MH, Radic K, Hoffmann JE, Chen ZA, Zou J, Tan PS, Galik B, Junttila S, Stolt-Bergner P, Pruneri G, Gyenesei A, Schultz C, Biskup MB, Besir H, Benes V, Rappsilber J, Jechlinger M, Korbel JO, Berger I, Braese S, Lemke EA

Nature methods, 2016

doi:10.1038/nmeth.4032.

The genomic and transcriptomic landscape of a HeLa cell line

Landry JJ, Pyl PT, Rausch T, Zichner T, Tekkedil MM, Stütz AM, Jauch A, Aiyar RS, Pau G, Delhomme N, Gagneur J, Korbel JO, Huber W, Steinmetz LM

G3 (Bethesda, Md.), 2013

doi:10.1534/g3.113.005777.