Single-molecule footprinting identifies context-dependent regulation of enhancers by DNA methylation.

Kreibich E, Kleinendorst R, Barzaghi G, Kaspar S, Krebs AR

Molecular cell, 2023

doi:10.1016/j.molcel.2023.01.017.

Single molecule multi-omics reveals context-dependent regulation of enhancers by DNA methylation.

Kreibich E, Kleinendorst R, Barzaghi G, Kaspar S, Krebs AR

bioRxiv.org, 2022

doi:10.1101/2022.05.19.492653.

Genome-wide quantification of transcription factor binding at single-DNA-molecule resolution using methyl-transferase footprinting.

Kleinendorst RWD, Barzaghi G, Smith ML, Zaugg JB, Krebs AR

Nature protocols, 2021

doi:10.1038/s41596-021-00630-1.

Molecular co-occupancy identifies transcription factor binding cooperativity in vivo.

Sönmezer C, Kleinendorst R, Imanci D, Barzaghi G, Villacorta L, Schübeler D, Benes V, Molina N, Krebs AR

Molecular cell, 2020

doi:10.1016/j.molcel.2020.11.015.

McQ – an open-source multiplexed SARS-CoV-2 quantification platform.

Vonesch SC, Bredikhin D, Dobrev N, Villacorta L, Kleinendorst R, Cacace E, Flock J, Frank M, Jung F, Kornienko J, Mitosch K, Osuna-Lopez M, Zimmermann J, Goettig S, Hamprecht A, Kraeusslich H, Knop M, Typas A, Steinmetz LM, Benes V, Remans K, Krebs AR

medRxiv, 2020

doi:10.1101/2020.12.02.20242628.

The small non-coding vault RNA1-1 acts as a riboregulator of autophagy.

Horos R, Büscher M, Kleinendorst R, Alleaume AM, Tarafder AK, Schwarzl T, Dziuba D, Tischer C, Zielonka EM, Adak A, Castello A, Huber W, Sachse C, Hentze MW

Cell, 2019

doi:10.1016/j.cell.2019.01.030.