SpatialData: an open and universal data framework for spatial omics. Marconato L, Palla G, Yamauchi KA, Virshup I, Heidari E, Treis T, Vierdag WM, Toth M, Stockhaus S, Shrestha RB, Rombaut B, Pollaris L, Lehner L, Vöhringer H, Kats I, Saeys Y, Saka SK, Huber W, Gerstung M, Moore J, Theis FJ, Stegle O Nature methods, 2024 doi:10.1038/s41592-024-02212-x.
A perspective on FAIR quality control in multiplexed imaging data processing. Vierdag WAM, Saka SK Frontiers in bioinformatics, 2024 doi:10.3389/fbinf.2024.1336257.