A subgroup of light-driven sodium pumps with an additional Schiff base counterion.

Podoliak E, Lamm GHU, Marin E, Schellbach AV, Fedotov DA, Stetsenko A, Asido M, Maliar N, Bourenkov G, Balandin T, Baeken C, Astashkin R, Schneider TR, Bateman A, Wachtveitl J, Schapiro I, Busskamp V, Guskov A, Gordeliy V, Alekseev A, Kovalev K.

Nat Commun, 2024

doi:10.1038/s41467-024-47469-0.

GREENER principles for environmentally sustainable computational science.

Lannelongue L, Aronson HG, Bateman A, Birney E, Caplan T, Juckes M, McEntyre J, Morris AD, Reilly G, Inouye M.

Nat Comput Sci, 2023

doi:10.1038/s43588-023-00461-y.

MBDBMetrics: an online metrics tool to measure the impact of biological data resources.

Insana G, Ignatchenko A, Martin M, Bateman A, UniProt Consortium .

Bioinform Adv, 2023

doi:10.1093/bioadv/vbad180.

Expanding the repertoire of human tandem repeat RNA-binding proteins.

Ormazábal A, Carletti MS, Saldaño TE, Gonzalez Buitron M, Marchetti J, Palopoli N, Bateman A.

PLoS One, 2023

doi:10.1371/journal.pone.0290890.

Uncovering new families and folds in the natural protein universe.

Durairaj J, Waterhouse AM, Mets T, Brodiazhenko T, Abdullah M, Studer G, Tauriello G, Akdel M, Andreeva A, Bateman A, Tenson T, Hauryliuk V, Schwede T, Pereira J.

Nature, 2023

doi:10.1038/s41586-023-06622-3.

When will RNA get its AlphaFold moment?

Schneider B, Sweeney BA, Bateman A, Cerny J, Zok T, Szachniuk M.

Nucleic Acids Res, 2023

doi:10.1093/nar/gkad726.

A STRP-ed definition of Structured Tandem Repeats in Proteins.

Monzon AM, Arrías PN, Elofsson A, Mier P, Andrade-Navarro MA, Bevilacqua M, Clementel D, Bateman A, Hirsh L, Fornasari MS, Parisi G, Piovesan D, Kajava AV, Tosatto SCE.

J Struct Biol, 2023

doi:10.1016/j.jsb.2023.108023.

Nightingale: web components for protein feature visualization.

Salazar GA, Luciani A, Watkins X, Kandasaamy S, Rice DL, Blum M, Bateman A, Martin M.

Bioinform Adv, 2023

doi:10.1093/bioadv/vbad064.

Nightingale: Web components for protein feature visualization

Salazar GA, Luciani A, Watkins X, Kandasaamy S, Rice DL, Blum M, Bateman A, Martin M.

2023

doi:10.20944/preprints202305.1797.v1.

What is hidden in the darkness? Deep-learning assisted large-scale protein family curation uncovers novel protein families and folds

Durairaj J, Waterhouse AM, Mets T, Brodiazhenko T, Abdullah M, Studer G, Akdel M, Andreeva A, Bateman A, Tenson T, Tenson T, Hauryliuk V, Schwede T, Pereira J.

2023

doi:10.1101/2023.03.14.532539.

Domain shuffling of a highly mutable ligand-binding fold drives adhesin generation across the bacterial kingdom.

Barringer R, Parnell AE, Lafita A, Monzon V, Back CR, Madej M, Potempa J, Nobbs AH, Burston SG, Bateman A, Race PR.

Proteins, 2023

doi:10.1002/prot.26487.

The Gene Ontology knowledgebase in 2023.

Gene Ontology Consortium, Aleksander SA, Balhoff J, Carbon S, Cherry JM, Drabkin HJ, Ebert D, Feuermann M, Gaudet P, Harris NL, Hill DP, Lee R, Mi H, Moxon S, Mungall CJ, Muruganugan A, Mushayahama T, Sternberg PW, Thomas PD, Van Auken K, Ramsey J, Siegele DA, Chisholm RL, Fey P, Aspromonte MC, Nugnes MV, Quaglia F, Tosatto S, Giglio M, Nadendla S, Antonazzo G, Attrill H, Dos Santos G, Marygold S, Strelets V, Tabone CJ, Thurmond J, Zhou P, Ahmed SH, Asanitthong P, Luna Buitrago D, Erdol MN, Gage MC, Ali Kadhum M, Li KYC, Long M, Michalak A, Pesala A, Pritazahra A, Saverimuttu SCC, Su R, Thurlow KE, Lovering RC, Logie C, Oliferenko S, Blake J, Christie K, Corbani L, Dolan ME, Drabkin HJ, Hill DP, Ni L, Sitnikov D, Smith C, Cuzick A, Seager J, Cooper L, Elser J, Jaiswal P, Gupta P, Jaiswal P, Naithani S, Lera-Ramirez M, Rutherford K, Wood V, De Pons JL, Dwinell MR, Hayman GT, Kaldunski ML, Kwitek AE, Laulederkind SJF, Tutaj MA, Vedi M, Wang SJ, D'Eustachio P, Aimo L, Axelsen K, Bridge A, Hyka-Nouspikel N, Morgat A, Aleksander SA, Cherry JM, Engel SR, Karra K, Miyasato SR, Nash RS, Skrzypek MS, Weng S, Wong ED, Bakker E, Berardini TZ, Reiser L, Auchincloss A, Axelsen K, Argoud-Puy G, Blatter MC, Boutet E, Breuza L, Bridge A, Casals-Casas C, Coudert E, Estreicher A, Livia Famiglietti M, Feuermann M, Gos A, Gruaz-Gumowski N, Hulo C, Hyka-Nouspikel N, Jungo F, Le Mercier P, Lieberherr D, Masson P, Morgat A, Pedruzzi I, Pourcel L, Poux S, Rivoire C, Sundaram S, Bateman A, Bowler-Barnett E, Bye-A-Jee H, Denny P, Ignatchenko A, Ishtiaq R, Lock A, Lussi Y, Magrane M, Martin MJ, Orchard S, Raposo P, Speretta E, Tyagi N, Warner K, Zaru R, Diehl AD, Lee R, Chan J, Diamantakis S, Raciti D, Zarowiecki M, Fisher M, James-Zorn C, Ponferrada V, Zorn A, Ramachandran S, Ruzicka L, Westerfield M.

Genetics, 2023

doi:10.1093/genetics/iyad031.

Database Commons: A Catalog of Worldwide Biological Databases.

Ma L, Zou D, Liu L, Shireen H, Abbasi AA, Bateman A, Xiao J, Zhao W, Bao Y, Zhang Z.

Genomics Proteomics Bioinformatics, 2023

doi:10.1016/j.gpb.2022.12.004.

Annotation of biologically relevant ligands in UniProtKB using ChEBI.

Coudert E, Gehant S, de Castro E, Pozzato M, Baratin D, Neto T, Sigrist CJA, Redaschi N, Bridge A, UniProt Consortium.

Bioinformatics, 2023

doi:10.1093/bioinformatics/btac793.

EMBL's European Bioinformatics Institute (EMBL-EBI) in 2022.

Thakur M, Bateman A, Brooksbank C, Freeberg M, Harrison M, Hartley M, Keane T, Kleywegt G, Leach A, Levchenko M, Morgan S, McDonagh EM, Orchard S, Papatheodorou I, Velankar S, Vizcaino JA, Witham R, Zdrazil B, McEntyre J.

Nucleic Acids Res, 2023

doi:10.1093/nar/gkac1098.

UniProt: the Universal Protein Knowledgebase in 2023.

UniProt Consortium.

Nucleic Acids Res, 2023

doi:10.1093/nar/gkac1052.

InterPro in 2022.

Paysan-Lafosse T, Blum M, Chuguransky S, Grego T, Pinto BL, Salazar GA, Bileschi ML, Bork P, Bridge A, Colwell L, Gough J, Haft DH, Letunić I, Marchler-Bauer A, Mi H, Natale DA, Orengo CA, Pandurangan AP, Rivoire C, Sigrist CJA, Sillitoe I, Thanki N, Thomas PD, Tosatto SCE, Wu CH, Bateman A.

Nucleic Acids Res, 2023

doi:10.1093/nar/gkac993.

Folding the unfoldable: using AlphaFold to explore spurious proteins.

Monzon V, Haft DH, Bateman A.

Bioinform Adv, 2022

doi:10.1093/bioadv/vbab043.

EROS is a selective chaperone regulating the phagocyte NADPH oxidase and purinergic signalling.

Randzavola LO, Mortimer PM, Garside E, Dufficy ER, Schejtman A, Roumelioti G, Yu L, Pardo M, Spirohn K, Tolley C, Brandt C, Harcourt K, Nichols E, Nahorski M, Woods G, Williamson JC, Suresh S, Sowerby JM, Matsumoto M, Santos CXC, Kiar CS, Mukhopadhyay S, Rae WM, Dougan GJ, Grainger J, Lehner PJ, Calderwood MA, Choudhary J, Clare S, Speak A, Santilli G, Bateman A, Smith KGC, Magnani F, Thomas DC.

Elife, 2022

doi:10.7554/elife.76387.

Reciprocal best structure hits: using AlphaFold models to discover distant homologues.

Monzon V, Paysan-Lafosse T, Wood V, Bateman A.

Bioinform Adv, 2022

doi:10.1093/bioadv/vbac072.

A structural biology community assessment of AlphaFold2 applications.

Akdel M, Pires DEV, Pardo EP, Jänes J, Zalevsky AO, Mészáros B, Bryant P, Good LL, Laskowski RA, Pozzati G, Shenoy A, Zhu W, Kundrotas P, Serra VR, Rodrigues CHM, Dunham AS, Burke D, Borkakoti N, Velankar S, Frost A, Basquin J, Lindorff-Larsen K, Bateman A, Kajava AV, Valencia A, Ovchinnikov S, Durairaj J, Ascher DB, Thornton JM, Davey NE, Stein A, Elofsson A, Croll TI, Beltrao P.

Nat Struct Mol Biol, 2022

doi:10.1038/s41594-022-00849-w.

DPCfam: Unsupervised protein family classification by Density Peak Clustering of large sequence datasets.

Russo ET, Barone F, Bateman A, Cozzini S, Punta M, Laio A.

PLoS Comput Biol, 2022

doi:10.1371/journal.pcbi.1010610.

Expanding the repertoire of human tandem repeat RNA-binding proteins

Ormazábal A, Carletti MS, Saldaño TE, Gonzalez-Buitron M, Marchetti J, Palopoli N, Bateman A.

2022

doi:10.1101/2022.09.12.507642.

A roadmap for the functional annotation of protein families: a community perspective.

de Crécy-Lagard V, Amorin de Hegedus R, Arighi C, Babor J, Bateman A, Blaby I, Blaby I, Blaby-Haas C, Bridge AJ, Burley SK, Cleveland S, Colwell LJ, Conesa A, Dallago C, Danchin A, de Waard A, Deutschbauer A, Dias R, Ding Y, Fang G, Friedberg I, Gerlt J, Goldford J, Gorelik M, Gyori BM, Henry C, Hutinet G, Jaroch M, Karp PD, Kondratova L, Lu Z, Marchler-Bauer A, Martin MJ, McWhite C, Moghe GD, Monaghan P, Morgat A, Mungall CJ, Natale DA, Nelson WC, O'Donoghue S, Orengo C, O'Toole KH, Radivojac P, Reed C, Roberts RJ, Rodionov D, Rodionova IA, Rudolf JD, Saleh L, Sheynkman G, Thibaud-Nissen F, Thomas PD, Uetz P, Vallenet D, Carter EW, Weigele PR, Wood V, Wood-Charlson EM, Xu J.

Database (Oxford), 2022

doi:10.1093/database/baac062.

Bacterial retrons encode phage-defending tripartite toxin-antitoxin systems.

Bobonis J, Mitosch K, Mateus A, Karcher N, Kritikos G, Selkrig J, Zietek M, Monzon V, Pfalz B, Garcia-Santamarina S, Galardini M, Sueki A, Kobayashi C, Stein F, Bateman A, Zeller G, Savitski MM, Elfenbein JR, Andrews-Polymenis HL, Typas A.

Nature, 2022

doi:10.1038/s41586-022-05091-4.

Reciprocal Best Structure Hits: Using AlphaFold models to discover distant homologues

Monzon V, Paysan-Lafosse T, Wood V, Bateman A.

2022

doi:10.1101/2022.07.04.498216.

Large-Scale Discovery of Microbial Fibrillar Adhesins and Identification of Novel Members of Adhesive Domain Families.

Monzon V, Bateman A.

J Bacteriol, 2022

doi:10.1128/jb.00107-22.

Using deep learning to annotate the protein universe.

Bileschi ML, Belanger D, Bryant DH, Sanderson T, Carter B, Sculley D, Bateman A, DePristo MA, Colwell LJ.

Nat Biotechnol, 2022

doi:10.1038/s41587-021-01179-w.

The European Bioinformatics Institute (EMBL-EBI) in 2021.

Cantelli G, Bateman A, Brooksbank C, Petrov AI, Malik-Sheriff RS, Ide-Smith M, Hermjakob H, Flicek P, Apweiler R, Birney E, McEntyre J.

Nucleic Acids Res, 2022

doi:10.1093/nar/gkab1127.

Editorial.

Bateman A, Lengauer T.

Bioinform Adv, 2021

doi:10.1093/bioadv/vbab001.

How to interpret AlphaFold structures

Bateman A, Velankar S, Tunyasuvakool K, Ovchinnikov S, Beltrao P, Mészáros B.

2021

doi:10.6019/tol.alphafold-w.2021.00001.1.

Large Scale Discovery of Microbial Fibrillar Adhesins and Identification of Novel Members of Adhesive Domain Families

Monzon V, Bateman A.

2021

doi:10.1101/2021.12.07.471604.

Ten simple rules to make your computing more environmentally sustainable.

Lannelongue L, Grealey J, Bateman A, Inouye M.

PLoS Comput Biol, 2021

doi:10.1371/journal.pcbi.1009324.

EROS is a selective chaperone regulating the phagocyte NADPH oxidase and purinergic signalling

Randzavola LO, Mortimer PM, Garside E, Dufficy ER, Schejtman A, Roumelioti G, Yu L, Pardo M, Spirohn K, Tolley C, Brandt C, Harcourt K, Nichols E, Nahorski M, Woods G, Williamson JC, Suresh S, Sowerby JM, Matsumoto M, Santos CX, Kiar CS, Mukhopadhyay S, Rae WM, Dougan GJ, Grainger J, Lehner PJ, Calderwood M, Choudhary J, Clare S, Speak A, Santilli G, Bateman A, Smith KGC, Magnani F, Thomas DC.

2021

doi:10.1101/2021.09.14.460103.

Highly accurate protein structure prediction for the human proteome.

Tunyasuvunakool K, Adler J, Wu Z, Green T, Zielinski M, Žídek A, Bridgland A, Cowie A, Meyer C, Laydon A, Velankar S, Kleywegt GJ, Bateman A, Evans R, Pritzel A, Figurnov M, Ronneberger O, Bates R, Kohl SAA, Potapenko A, Ballard AJ, Romera-Paredes B, Nikolov S, Jain R, Clancy E, Reiman D, Petersen S, Senior AW, Kavukcuoglu K, Birney E, Kohli P, Jumper J, Hassabis D.

Nature, 2021

doi:10.1038/s41586-021-03828-1.

Discovery of fibrillar adhesins across bacterial species.

Monzon V, Lafita A, Bateman A.

BMC Genomics, 2021

doi:10.1186/s12864-021-07586-2.

Periscope Proteins are variable-length regulators of bacterial cell surface interactions.

Whelan F, Lafita A, Gilburt J, Dégut C, Griffiths SC, Jenkins HT, St John AN, Paci E, Moir JWB, Plevin MJ, Baumann CG, Bateman A, Potts JR.

Proc Natl Acad Sci U S A, 2021

doi:10.1073/pnas.2101349118.

Sequence analysis of tyrosine recombinases allows annotation of mobile genetic elements in prokaryotic genomes.

Smyshlyaev G, Bateman A, Barabas O.

Mol Syst Biol, 2021

doi:10.15252/msb.20209880.

Cryo-EM structures of human RNA polymerase III in its unbound and transcribing states.

Girbig M, Misiaszek AD, Vorländer MK, Lafita A, Grötsch H, Baudin F, Bateman A, Müller CW.

Nat Struct Mol Biol, 2021

doi:10.1038/s41594-020-00555-5.

The Gene Ontology resource: enriching a GOld mine.

Gene Ontology Consortium.

Nucleic Acids Res, 2021

doi:10.1093/nar/gkaa1113.

UniProt: the universal protein knowledgebase in 2021.

UniProt Consortium.

Nucleic Acids Res, 2021

doi:10.1093/nar/gkaa1100.

Rfam 14: expanded coverage of metagenomic, viral and microRNA families.

Kalvari I, Nawrocki EP, Ontiveros-Palacios N, Argasinska J, Lamkiewicz K, Marz M, Griffiths-Jones S, Toffano-Nioche C, Gautheret D, Weinberg Z, Rivas E, Eddy SR, Finn RD, Bateman A, Petrov AI.

Nucleic Acids Res, 2021

doi:10.1093/nar/gkaa1047.

The InterPro protein families and domains database: 20 years on.

Blum M, Chang HY, Chuguransky S, Grego T, Kandasaamy S, Mitchell A, Nuka G, Paysan-Lafosse T, Qureshi M, Raj S, Richardson L, Salazar GA, Williams L, Bork P, Bridge A, Gough J, Haft DH, Letunic I, Marchler-Bauer A, Mi H, Natale DA, Necci M, Orengo CA, Pandurangan AP, Rivoire C, Sigrist CJA, Sillitoe I, Thanki N, Thomas PD, Tosatto SCE, Wu CH, Bateman A, Finn RD.

Nucleic Acids Res, 2021

doi:10.1093/nar/gkaa977.

Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.

Hufsky F, Lamkiewicz K, Almeida A, Aouacheria A, Arighi C, Bateman A, Baumbach J, Beerenwinkel N, Brandt C, Cacciabue M, Chuguransky S, Drechsel O, Finn RD, Fritz A, Fuchs S, Hattab G, Hauschild AC, Heider D, Hoffmann M, Hölzer M, Hoops S, Kaderali L, Kalvari I, von Kleist M, Kmiecinski R, Kühnert D, Lasso G, Libin P, List M, Löchel HF, Martin MJ, Martin R, Matschinske J, McHardy AC, Mendes P, Mistry J, Navratil V, Nawrocki EP, O'Toole ÁN, Ontiveros-Palacios N, Petrov AI, Rangel-Pineros G, Redaschi N, Reimering S, Reinert K, Reyes A, Richardson L, Robertson DL, Sadegh S, Singer JB, Theys K, Upton C, Welzel M, Williams L, Marz M.

Brief Bioinform, 2021

doi:10.1093/bib/bbaa232.

Pfam: The protein families database in 2021.

Mistry J, Chuguransky S, Williams L, Qureshi M, Salazar GA, Sonnhammer ELL, Tosatto SCE, Paladin L, Raj S, Richardson LJ, Finn RD, Bateman A.

Nucleic Acids Res, 2021

doi:10.1093/nar/gkaa913.

RNAcentral 2021: secondary structure integration, improved sequence search and new member databases.

RNAcentral Consortium.

Nucleic Acids Res, 2021

doi:10.1093/nar/gkaa921.

How to use the MEROPS database and website to help understand peptidase specificity.

Rawlings ND, Bateman A.

Protein Sci, 2021

doi:10.1002/pro.3948.

Periscope Proteins are variable length regulators of bacterial cell surface interactions

Whelan F, Lafita A, Gilburt J, Dégut C, Griffiths SC, Jenkins HT, St John AN, Paci E, Moir JW, Plevin MJ, Baumann CG, Bateman A, Potts JR.

2020

doi:10.1101/2020.12.24.424174.

Discovery of Fibrillar Adhesins across Bacterial Species

Monzon V, Lafita A, Bateman A.

2020

doi:10.1101/2020.12.07.414375.

Exploring Non-Coding RNAs in RNAcentral.

Sweeney BA, Tagmazian AA, Ribas CE, Finn RD, Bateman A, Petrov AI.

Curr Protoc Bioinformatics, 2020

doi:10.1002/cpbi.104.

Acetylation of Surface Carbohydrates in Bacterial Pathogens Requires Coordinated Action of a Two-Domain Membrane-Bound Acyltransferase.

Pearson CR, Tindall SN, Herman R, Jenkins HT, Bateman A, Thomas GH, Potts JR, Van der Woude MW.

mBio, 2020

doi:10.1128/mbio.01364-20.

Modelling structural rearrangements in proteins using Euclidean distance matrices

Lafita A, Bateman A.

2020

doi:10.12688/f1000research.25235.1.

Cryo-EM structures of human RNA polymerase III in its unbound and transcribing states

Girbig M, Misiaszek AD, Vorländer MK, Lafita A, Grötsch H, Baudin F, Bateman A, Müller CW.

2020

doi:10.1101/2020.06.29.177642.

Caenorhabditis elegans AF4/FMR2 Family Homolog affl-2 Regulates Heat-Shock-Induced Gene Expression.

Walton SJ, Wang H, Quintero-Cadena P, Bateman A, Sternberg PW.

Genetics, 2020

doi:10.1534/genetics.120.302923.

Computational Strategies to Combat COVID-19: Useful Tools to Accelerate SARS-CoV-2 and Coronavirus Research

Hufsky F, Lamkiewicz K, Almeida A, Aouacheria A, Arighi C, Bateman A, Baumbach J, Beerenwinkel N, Brandt C, Cacciabue M, Chuguransky S, Drechsel O, Finn RD, Fritz A, Fuchs S, Hattab G, Hauschild A, Heider D, Hoffmann M, Hölzer M, Hoops S, Kaderali L, Kalvari I, von Kleist M, Kmiecinski R, Kühnert D, Lasso G, Libin P, List M, Löchel HF, Martin MJ, Martin R, Matschinske J, McHardy AC, Mendes P, Mistry J, Navratil V, Nawrocki E, O'Toole ÁN, Palacios-Ontiveros N, Petrov AI, Rangel-Piñeros G, Redaschi N, Reimering S, Reinert K, Reyes A, Richardson L, Robertson DL, Sadegh S, Singer JB, Theys K, Upton C, Welzel M, Williams L, Marz M.

2020

doi:10.20944/preprints202005.0376.v1.

UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase.

MacDougall A, Volynkin V, Saidi R, Poggioli D, Zellner H, Hatton-Ellis E, Joshi V, O'Donovan C, Orchard S, Auchincloss AH, Baratin D, Bolleman J, Coudert E, de Castro E, Hulo C, Masson P, Pedruzzi I, Rivoire C, Arighi C, Wang Q, Chen C, Huang H, Garavelli J, Vinayaka CR, Yeh LS, Natale DA, Laiho K, Martin MJ, Renaux A, Pichler K, UniProt Consortium.

Bioinformatics, 2020

doi:10.1093/bioinformatics/btaa485.

The thrombospondin module 1 domain of the matricellular protein CCN3 shows an atypical disulfide pattern and incomplete CWR layers.

Xu ER, Lafita A, Bateman A, Hyvönen M.

Acta Crystallogr D Struct Biol, 2020

doi:10.1107/s2059798319016747.

The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences.

Drysdale R, Cook CE, Petryszak R, Baillie-Gerritsen V, Barlow M, Gasteiger E, Gruhl F, Haas J, Lanfear J, Lopez R, Redaschi N, Stockinger H, Teixeira D, Venkatesan A, Elixir Core Data Resource Forum, Blomberg N, Durinx C, McEntyre J.

Bioinformatics, 2020

doi:10.1093/bioinformatics/btz959.

Solution structure of human myeloid-derived growth factor suggests a conserved function in the endoplasmic reticulum.

Bortnov V, Tonelli M, Lee W, Lin Z, Annis DS, Demerdash ON, Bateman A, Mitchell JC, Ge Y, Markley JL, Mosher DF.

Nat Commun, 2019

doi:10.1038/s41467-019-13577-5.

Defining the remarkable structural malleability of a bacterial surface protein Rib domain implicated in infection.

Whelan F, Lafita A, Griffiths SC, Cooper REM, Whittingham JL, Turkenburg JP, Manfield IW, St John AN, Paci E, Bateman A, Potts JR.

Proc Natl Acad Sci U S A, 2019

doi:10.1073/pnas.1911776116.

Caenorhabditis elegansAF4/FMR2 family homologaffl-2is required for heat shock induced gene expression

Walton SJ, Wang H, Quintero-Cadena P, Bateman A, Sternberg PW.

2019

doi:10.1101/817833.

Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases.

Tørresen OK, Star B, Mier P, Andrade-Navarro MA, Bateman A, Jarnot P, Gruca A, Grynberg M, Kajava AV, Promponas VJ, Anisimova M, Jakobsen KS, Linke D.

Nucleic Acids Res, 2019

doi:10.1093/nar/gkz841.

Thrombospondin module 1 domain (TSP1) of the matricellular protein CCN3 shows an atypical disulfide pattern and incomplete CWR layers

Xu E, Lafita A, Bateman A, Hyvönen M.

2019

doi:10.1101/779553.

FAIR adoption, assessment and challenges at UniProt.

Garcia L, Bolleman J, Gehant S, Redaschi N, Martin M, UniProt Consortium.

Sci Data, 2019

doi:10.1038/s41597-019-0180-9.

Origins of peptidases.

Rawlings ND, Bateman A.

Biochimie, 2019

doi:10.1016/j.biochi.2019.07.026.

Tandem domain swapping: determinants of multidomain protein misfolding.

Lafita A, Tian P, Best RB, Bateman A.

Curr Opin Struct Biol, 2019

doi:10.1016/j.sbi.2019.05.012.

Sequence analysis allows functional annotation of tyrosine recombinases in prokaryotic genomes

Smyshlyaev G, Barabas O, Bateman A.

2019

doi:10.1101/542381.

RNAcentral: a hub of information for non-coding RNA sequences.

The RNAcentral Consortium.

Nucleic Acids Res, 2019

doi:10.1093/nar/gky1206.

The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest.

Trendel J, Schwarzl T, Horos R, Prakash A, Bateman A, Hentze MW, Krijgsveld J.

Cell, 2019

doi:10.1016/j.cell.2018.11.004.

TADOSS: computational estimation of tandem domain swap stability.

Lafita A, Tian P, Best RB, Bateman A.

Bioinformatics, 2019

doi:10.1093/bioinformatics/bty974.

The Gene Ontology Resource: 20 years and still GOing strong.

The Gene Ontology Consortium.

Nucleic Acids Res, 2019

doi:10.1093/nar/gky1055.

UniProt: a worldwide hub of protein knowledge.

UniProt Consortium.

Nucleic Acids Res, 2019

doi:10.1093/nar/gky1049.

RNAcentral: a hub of information for non-coding RNA sequences.

The RNAcentral Consortium.

Nucleic Acids Res, 2019

doi:10.1093/nar/gky1034.

The Pfam protein families database in 2019.

El-Gebali S, Mistry J, Bateman A, Eddy SR, Luciani A, Potter SC, Qureshi M, Richardson LJ, Salazar GA, Smart A, Sonnhammer ELL, Hirsh L, Paladin L, Piovesan D, Tosatto SCE, Finn RD.

Nucleic Acids Res, 2019

doi:10.1093/nar/gky995.

Rapid identification of novel protein families using similarity searches.

Jeffryes M, Bateman A.

F1000Res, 2018

doi:10.12688/f1000research.17315.1.

Rapid identification of novel protein families using similarity searches

Jeffryes M, Bateman A.

2018

doi:10.12688/f1000research.17315.1.

The Human RNA-Binding Proteome and Its Dynamics During Arsenite-Induced Translational Arrest

Trendel J, Schwarzl T, Prakash A, Bateman A, Hentze MW, Krijgsveld J.

2018

doi:10.1101/329995.

Non-Coding RNA Analysis Using the Rfam Database.

Kalvari I, Nawrocki EP, Argasinska J, Quinones-Olvera N, Finn RD, Bateman A, Petrov AI.

Curr Protoc Bioinformatics, 2018

doi:10.1002/cpbi.51.

Gene Unprediction with Spurio: A tool to identify spurious protein sequences.

Höps W, Jeffryes M, Bateman A.

F1000Res, 2018

doi:10.12688/f1000research.14050.1.

The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database.

Rawlings ND, Barrett AJ, Thomas PD, Huang X, Bateman A, Finn RD.

Nucleic Acids Res, 2018

doi:10.1093/nar/gkx1134.

Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families.

Kalvari I, Argasinska J, Quinones-Olvera N, Nawrocki EP, Rivas E, Eddy SR, Bateman A, Finn RD, Petrov AI.

Nucleic Acids Res, 2018

doi:10.1093/nar/gkx1038.

The HMMER Web Server for Protein Sequence Similarity Search.

Prakash A, Jeffryes M, Bateman A, Finn RD.

Curr Protoc Bioinformatics, 2017

doi:10.1002/cpbi.40.

On expert curation and scalability: UniProtKB/Swiss-Prot as a case study.

Poux S, Arighi CN, Magrane M, Bateman A, Wei CH, Lu Z, Boutet E, Bye-A-Jee H, Famiglietti ML, Roechert B, UniProt Consortium T.

Bioinformatics, 2017

doi:10.1093/bioinformatics/btx439.

The yeast noncoding RNA interaction network.

Panni S, Prakash A, Bateman A, Orchard S.

RNA, 2017

doi:10.1261/rna.060996.117.

Eros is a novel transmembrane protein that controls the phagocyte respiratory burst and is essential for innate immunity.

Thomas DC, Clare S, Sowerby JM, Pardo M, Juss JK, Goulding DA, van der Weyden L, Storisteanu D, Prakash A, Espéli M, Flint S, Lee JC, Hoenderdos K, Kane L, Harcourt K, Mukhopadhyay S, Umrania Y, Antrobus R, Nathan JA, Adams DJ, Bateman A, Choudhary JS, Lyons PA, Condliffe AM, Chilvers ER, Dougan G, Smith KG.

J Exp Med, 2017

doi:10.1084/jem.20161382.

Data management: A global coalition to sustain core data.

Anderson WP, Global Life Science Data Resources Working Group.

Nature, 2017

doi:10.1038/543179a.

Structure of the Escherichia coli ProQ RNA-binding protein.

Gonzalez GM, Hardwick SW, Maslen SL, Skehel JM, Holmqvist E, Vogel J, Bateman A, Luisi BF, Broadhurst RW.

RNA, 2017

doi:10.1261/rna.060343.116.

InterPro in 2017-beyond protein family and domain annotations.

Finn RD, Attwood TK, Babbitt PC, Bateman A, Bork P, Bridge AJ, Chang HY, Dosztányi Z, El-Gebali S, Fraser M, Gough J, Haft D, Holliday GL, Huang H, Huang X, Letunic I, Lopez R, Lu S, Marchler-Bauer A, Mi H, Mistry J, Natale DA, Necci M, Nuka G, Orengo CA, Park Y, Pesseat S, Piovesan D, Potter SC, Rawlings ND, Redaschi N, Richardson L, Rivoire C, Sangrador-Vegas A, Sigrist C, Sillitoe I, Smithers B, Squizzato S, Sutton G, Thanki N, Thomas PD, Tosatto SC, Wu CH, Xenarios I, Yeh LS, Young SY, Mitchell AL.

Nucleic Acids Res, 2017

doi:10.1093/nar/gkw1107.

RNAcentral: a comprehensive database of non-coding RNA sequences.

The RNAcentral Consortium, Petrov AI, Kay SJE, Kalvari I, Howe KL, Gray KA, Bruford EA, Kersey PJ, Cochrane G, Finn RD, Bateman A, Kozomara A, Griffiths-Jones S, Frankish A, Zwieb CW, Lau BY, Williams KP, Chan PP, Lowe TM, Cannone JJ, Gutell R, Machnicka MA, Bujnicki JM, Yoshihama M, Kenmochi N, Chai B, Cole JR, Szymanski M, Karlowski WM, Wood V, Huala E, Berardini TZ, Zhao Y, Chen R, Zhu W, Paraskevopoulou MD, Vlachos IS, Hatzigeorgiou AG, Ma L, Zhang Z, Puetz J, Stadler PF, McDonald D, Basu S, Fey P, Engel SR, Cherry JM, Volders PJ, Mestdagh P, Wower J, Clark MB, Quek XC, Dinger ME.

Nucleic Acids Res, 2017

doi:10.1093/nar/gkw1008.

On expert curation and sustainability: UniProtKB/Swiss-Prot as a case study

Poux S, Arighi CN, Magrane M, Bateman A, Wei C, Lu Z, Boutet E, Bye-A-Jee H, Famiglietti ML, Roechert B, The UniProt Consortium.

2016

doi:10.1101/094011.

UniProt-DAAC: domain architecture alignment and classification, a new method for automatic functional annotation in UniProtKB.

Doğan T, MacDougall A, Saidi R, Poggioli D, Bateman A, O'Donovan C, Martin MJ.

Bioinformatics, 2016

doi:10.1093/bioinformatics/btw114.

Patterns of database citation in articles and patents indicate long-term scientific and industry value of biological data resources.

Bousfield D, McEntyre J, Velankar S, Papadatos G, Bateman A, Cochrane G, Kim JH, Graef F, Vartak V, Alako B, Blomberg N.

F1000Res, 2016

doi:10.12688/f1000research.7911.1.

The Pfam protein families database: towards a more sustainable future.

Finn RD, Coggill P, Eberhardt RY, Eddy SR, Mistry J, Mitchell AL, Potter SC, Punta M, Qureshi M, Sangrador-Vegas A, Salazar GA, Tate J, Bateman A.

Nucleic Acids Res, 2016

doi:10.1093/nar/gkv1344.

The Importance of Biological Databases in Biological Discovery.

Baxevanis AD, Bateman A.

Curr Protoc Bioinformatics, 2015

doi:10.1002/0471250953.bi0101s50.

HMMER web server: 2015 update.

Finn RD, Clements J, Arndt W, Miller BL, Wheeler TJ, Schreiber F, Bateman A, Eddy SR.

Nucleic Acids Res, 2015

doi:10.1093/nar/gkv397.

Domain atrophy creates rare cases of functional partial protein domains.

Prakash A, Bateman A.

Genome Biol, 2015

doi:10.1186/s13059-015-0655-8.

Key challenges for the creation and maintenance of specialist protein resources.

Holliday GL, Bairoch A, Bagos PG, Chatonnet A, Craik DJ, Finn RD, Henrissat B, Landsman D, Manning G, Nagano N, O'Donovan C, Pruitt KD, Rawlings ND, Saier M, Sowdhamini R, Spedding M, Srinivasan N, Vriend G, Babbitt PC, Bateman A.

Proteins, 2015

doi:10.1002/prot.24803.

The InterPro protein families database: the classification resource after 15 years.

Mitchell A, Chang HY, Daugherty L, Fraser M, Hunter S, Lopez R, McAnulla C, McMenamin C, Nuka G, Pesseat S, Sangrador-Vegas A, Scheremetjew M, Rato C, Yong SY, Bateman A, Punta M, Attwood TK, Sigrist CJ, Redaschi N, Rivoire C, Xenarios I, Kahn D, Guyot D, Bork P, Letunic I, Gough J, Oates M, Haft D, Huang H, Natale DA, Wu CH, Orengo C, Sillitoe I, Mi H, Thomas PD, Finn RD.

Nucleic Acids Res, 2015

doi:10.1093/nar/gku1243.

Gene Ontology Consortium: going forward.

Gene Ontology Consortium.

Nucleic Acids Res, 2015

doi:10.1093/nar/gku1179.

Rfam 12.0: updates to the RNA families database.

Nawrocki EP, Burge SW, Bateman A, Daub J, Eberhardt RY, Eddy SR, Floden EW, Gardner PP, Jones TA, Tate J, Finn RD.

Nucleic Acids Res, 2015

doi:10.1093/nar/gku1063.

RNAcentral: an international database of ncRNA sequences.

RNAcentral Consortium, Petrov AI, Kay SJE, Gibson R, Kulesha E, Staines D, Bruford EA, Wright MW, Burge S, Finn RD, Kersey PJ, Cochrane G, Bateman A, Griffiths-Jones S, Harrow J, Chan PP, Lowe TM, Zwieb CW, Wower J, Williams KP, Hudson CM, Gutell R, Clark MB, Dinger M, Quek XC, Bujnicki JM, Chua NH, Liu J, Wang H, Skogerbø G, Zhao Y, Chen R, Zhu W, Cole JR, Chai B, Huang HD, Huang HY, Cherry JM, Hatzigeorgiou A, Pruitt KD.

Nucleic Acids Res, 2015

doi:10.1093/nar/gku991.

UniProt: a hub for protein information.

UniProt Consortium.

Nucleic Acids Res, 2015

doi:10.1093/nar/gku989.

Using the MEROPS Database for Proteolytic Enzymes and Their Inhibitors and Substrates.

Rawlings ND, Barrett AJ, Bateman A.

Curr Protoc Bioinformatics, 2014

doi:10.1002/0471250953.bi0125s48.

Structure and computational analysis of a novel protein with metallopeptidase-like and circularly permuted winged-helix-turn-helix domains reveals a possible role in modified polysaccharide biosynthesis.

Das D, Murzin AG, Rawlings ND, Finn RD, Coggill P, Bateman A, Godzik A, Aravind L.

BMC Bioinformatics, 2014

doi:10.1186/1471-2105-15-75.

Expert curation in UniProtKB: a case study on dealing with conflicting and erroneous data.

Poux S, Magrane M, Arighi CN, Bridge A, O'Donovan C, Laiho K, UniProt Consortium.

Database (Oxford), 2014

doi:10.1093/database/bau016.

iPfam: a database of protein family and domain interactions found in the Protein Data Bank.

Finn RD, Miller BL, Clements J, Bateman A.

Nucleic Acids Res, 2014

doi:10.1093/nar/gkt1210.

Pfam: the protein families database.

Finn RD, Bateman A, Clements J, Coggill P, Eberhardt RY, Eddy SR, Heger A, Hetherington K, Holm L, Mistry J, Sonnhammer EL, Tate J, Punta M.

Nucleic Acids Res, 2014

doi:10.1093/nar/gkt1223.

Activities at the Universal Protein Resource (UniProt).

UniProt Consortium.

Nucleic Acids Res, 2014

doi:10.1093/nar/gkt1140.

TreeFam v9: a new website, more species and orthology-on-the-fly.

Schreiber F, Patricio M, Muffato M, Pignatelli M, Bateman A.

Nucleic Acids Res, 2014

doi:10.1093/nar/gkt1055.

MEROPS: the database of proteolytic enzymes, their substrates and inhibitors.

Rawlings ND, Waller M, Barrett AJ, Bateman A.

Nucleic Acids Res, 2014

doi:10.1093/nar/gkt953.

The challenge of increasing Pfam coverage of the human proteome.

Mistry J, Coggill P, Eberhardt RY, Deiana A, Giansanti A, Finn RD, Bateman A, Punta M.

Database (Oxford), 2013

doi:10.1093/database/bat023.

DATABASE, The Journal of Biological Databases and Curation, is now the official journal of the International Society for Biocuration.

Gaudet P, Munoz-Torres M, Munoz-Torres M, Robinson-Rechavi M, Attwood T, Bateman A, Cherry JM, Kania R, O'Donovan C, Yamasaki C.

Database (Oxford), 2013

doi:10.1093/database/bat077.

LUD, a new protein domain associated with lactate utilization.

Hwang WC, Bakolitsa C, Punta M, Coggill PC, Bateman A, Axelrod HL, Rawlings ND, Sedova M, Peterson SN, Eberhardt RY, Aravind L, Pascual J, Godzik A.

BMC Bioinformatics, 2013

doi:10.1186/1471-2105-14-341.

Filling out the structural map of the NTF2-like superfamily.

Eberhardt RY, Chang Y, Bateman A, Murzin AG, Axelrod HL, Hwang WC, Aravind L.

BMC Bioinformatics, 2013

doi:10.1186/1471-2105-14-327.

ISCB computational biology Wikipedia competition.

Bateman A, Kelso J, Mietchen D, Macintyre G, Di Domenico T, Abeel T, Logan DW, Radivojac P, Rost B.

PLoS Comput Biol, 2013

doi:10.1371/journal.pcbi.1003242.

The COMBREX project: design, methodology, and initial results.

Anton BP, Chang YC, Brown P, Choi HP, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, Mazumdar V, McGettrick M, Osmani L, Pokrzywa R, Rachlin J, Swaminathan R, Allen B, Housman G, Monahan C, Rochussen K, Tao K, Bhagwat AS, Brenner SE, Columbus L, de Crécy-Lagard V, Ferguson D, Fomenkov A, Gadda G, Morgan RD, Osterman AL, Rodionov DA, Rodionova IA, Rudd KE, Söll D, Spain J, Xu SY, Bateman A, Blumenthal RM, Bollinger JM, Chang WS, Ferrer M, Friedberg I, Galperin MY, Gobeill J, Haft D, Hunt J, Karp P, Klimke W, Krebs C, Macelis D, Madupu R, Martin MJ, Miller JH, O'Donovan C, Palsson B, Ruch P, Setterdahl A, Sutton G, Tate J, Yakunin A, Tchigvintsev D, Plata G, Hu J, Greiner R, Horn D, Sjölander K, Salzberg SL, Vitkup D, Letovsky S, Segrè D, DeLisi C, Roberts RJ, Steffen M, Kasif S.

PLoS Biol, 2013

doi:10.1371/journal.pbio.1001638.

Two Pfam protein families characterized by a crystal structure of protein lpg2210 from Legionella pneumophila.

Coggill P, Eberhardt RY, Finn RD, Chang Y, Jaroszewski L, Godzik A, Das D, Xu Q, Axelrod HL, Aravind L, Murzin AG, Bateman A.

BMC Bioinformatics, 2013

doi:10.1186/1471-2105-14-265.

The challenge of increasing Pfam coverage of the human proteome

Mistry J, Coggill P, Eberhardt R, Deiana A, Giansanti A, Finn R, Bateman A, Punta M.

Database: The Journal of Biological Databases and Curation, 2013

doi:.

Alternative splicing of intrinsically disordered regions and rewiring of protein interactions.

Buljan M, Chalancon G, Dunker AK, Bateman A, Balaji S, Fuxreiter M, Babu MM.

Curr Opin Struct Biol, 2013

doi:10.1016/j.sbi.2013.03.006.

Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions.

Mistry J, Finn RD, Eddy SR, Bateman A, Punta M.

Nucleic Acids Res, 2013

doi:10.1093/nar/gkt263.

A comparison of dense transposon insertion libraries in the Salmonella serovars Typhi and Typhimurium.

Barquist L, Langridge GC, Turner DJ, Phan MD, Turner AK, Bateman A, Parkhill J, Wain J, Gardner PP.

Nucleic Acids Res, 2013

doi:10.1093/nar/gkt148.

The SHOCT domain: a widespread domain under-represented in model organisms.

Eberhardt RY, Bartholdson SJ, Punta M, Bateman A.

PLoS One, 2013

doi:10.1371/journal.pone.0057848.

Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling.

Clarke M, Lohan AJ, Liu B, Lagkouvardos I, Roy S, Zafar N, Bertelli C, Schilde C, Kianianmomeni A, Bürglin TR, Frech C, Turcotte B, Kopec KO, Synnott JM, Choo C, Paponov I, Finkler A, Heng Tan CS, Hutchins AP, Weinmeier T, Rattei T, Chu JS, Gimenez G, Irimia M, Rigden DJ, Fitzpatrick DA, Lorenzo-Morales J, Bateman A, Chiu CH, Tang P, Hegemann P, Fromm H, Raoult D, Greub G, Miranda-Saavedra D, Chen N, Nash P, Ginger ML, Horn M, Schaap P, Caler L, Loftus BJ.

Genome Biol, 2013

doi:10.1186/gb-2013-14-2-r11.

Rfam 11.0: 10 years of RNA families.

Burge SW, Daub J, Eberhardt R, Tate J, Barquist L, Nawrocki EP, Eddy SR, Gardner PP, Bateman A.

Nucleic Acids Res, 2013

doi:10.1093/nar/gks1005.

Recent advances in biocuration: meeting report from the Fifth International Biocuration Conference.

Gaudet P, Arighi C, Bastian F, Bateman A, Blake JA, Cherry MJ, D'Eustachio P, Finn R, Giglio M, Hirschman L, Kania R, Klimke W, Martin MJ, Karsch-Mizrachi I, Munoz-Torres M, Munoz-Torres M, Natale D, O'Donovan C, Ouellette F, Pruitt KD, Robinson-Rechavi M, Sansone SA, Schofield P, Sutton G, Van Auken K, Vasudevan S, Wu C, Young J, Mazumder R.

Database (Oxford), 2012

doi:10.1093/database/bas036.

Tissue-specific splicing of disordered segments that embed binding motifs rewires protein interaction networks.

Buljan M, Chalancon G, Eustermann S, Wagner GP, Fuxreiter M, Bateman A, Babu MM.

Mol Cell, 2012

doi:10.1016/j.molcel.2012.05.039.

InterPro in 2011: new developments in the family and domain prediction database

Nucleic Acids Res, 2012

doi:10.1093/nar/gks456.

The YARHG domain: an extracellular domain in search of a function.

Coggill P, Bateman A.

PLoS One, 2012

doi:10.1371/journal.pone.0035575.

AntiFam: a tool to help identify spurious ORFs in protein annotation.

Eberhardt RY, Haft DH, Punta M, Martin M, O'Donovan C, Bateman A.

Database (Oxford), 2012

doi:10.1093/database/bas003.

Biocurators and biocuration: surveying the 21st century challenges.

Burge S, Attwood TK, Bateman A, Berardini TZ, Cherry M, O'Donovan C, Xenarios L, Gaudet P.

Database (Oxford), 2012

doi:10.1093/database/bar059.

Bioimage informatics: a new category in Bioinformatics.

Peng H, Bateman A, Valencia A, Wren JD.

Bioinformatics, 2012

doi:10.1093/bioinformatics/bts111.

Making your database available through Wikipedia: the pros and cons.

Finn RD, Gardner PP, Bateman A.

Nucleic Acids Res, 2012

doi:10.1093/nar/gkr1195.

The Pfam protein families database.

Punta M, Coggill PC, Eberhardt RY, Mistry J, Tate J, Boursnell C, Pang N, Forslund K, Ceric G, Clements J, Heger A, Holm L, Sonnhammer EL, Eddy SR, Bateman A, Finn RD.

Nucleic Acids Res, 2012

doi:10.1093/nar/gkr1065.

InterPro in 2011: new developments in the family and domain prediction database.

Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S, de Castro E, Coggill P, Corbett M, Das U, Daugherty L, Duquenne L, Finn RD, Fraser M, Gough J, Haft D, Hulo N, Kahn D, Kelly E, Letunic I, Lonsdale D, Lopez R, Madera M, Maslen J, McAnulla C, McDowall J, McMenamin C, Mi H, Mutowo-Muellenet P, Mulder N, Natale D, Orengo C, Pesseat S, Punta M, Quinn AF, Rivoire C, Sangrador-Vegas A, Selengut JD, Sigrist CJ, Scheremetjew M, Tate J, Thimmajanarthanan M, Thomas PD, Wu CH, Yeats C, Yong SY.

Nucleic Acids Res, 2012

doi:10.1093/nar/gkr948.

MEROPS: the database of proteolytic enzymes, their substrates and inhibitors.

Rawlings ND, Barrett AJ, Bateman A.

Nucleic Acids Res, 2012

doi:10.1093/nar/gkr987.

The rise and fall of supervised machine learning techniques.

Jensen LJ, Bateman A.

Bioinformatics, 2011

doi:10.1093/bioinformatics/btr585.

RNAcentral: A vision for an international database of RNA sequences.

Bateman A, Agrawal S, Birney E, Bruford EA, Bujnicki JM, Cochrane G, Cole JR, Dinger ME, Enright AJ, Gardner PP, Gautheret D, Griffiths-Jones S, Harrow J, Herrero J, Holmes IH, Huang HD, Kelly KA, Kersey P, Kozomara A, Lowe TM, Marz M, Moxon S, Pruitt KD, Samuelsson T, Stadler PF, Vilella AJ, Vogel JH, Williams KP, Wright MW, Zwieb C.

RNA, 2011

doi:10.1261/rna.2750811.

Asparagine peptide lyases: a seventh catalytic type of proteolytic enzymes.

Rawlings ND, Barrett AJ, Bateman A.

J Biol Chem, 2011

doi:10.1074/jbc.m111.260026.

The characterisation of three types of genes that overlie copy number variable regions.

Woodwark C, Bateman A.

PLoS One, 2011

doi:10.1371/journal.pone.0014814.

RNIE: genome-wide prediction of bacterial intrinsic terminators.

Gardner PP, Barquist L, Bateman A, Nawrocki EP, Weinberg Z.

Nucleic Acids Res, 2011

doi:10.1093/nar/gkr168.

Towards BioDBcore: a community-defined information specification for biological databases.

Gaudet P, Bairoch A, Field D, Sansone SA, Taylor C, Attwood TK, Bateman A, Blake JA, Bult CJ, Cherry JM, Chisholm RL, Cochrane G, Cook CE, Eppig JT, Galperin MY, Gentleman R, Goble CA, Gojobori T, Hancock JM, Howe DG, Imanishi T, Kelso J, Landsman D, Lewis SE, Mizrachi IK, Orchard S, Ouellette BF, Ranganathan S, Richardson L, Rocca-Serra P, Schofield PN, Smedley D, Southan C, Tan TW, Tatusova T, Whetzel PL, White O, Yamasaki C, BioDBCore Working Group.

Nucleic Acids Res, 2011

doi:10.1093/nar/gkq1173.

Rfam: Wikipedia, clans and the "decimal" release.

Gardner PP, Daub J, Tate J, Moore BL, Osuch IH, Griffiths-Jones S, Finn RD, Nawrocki EP, Kolbe DL, Eddy SR, Bateman A.

Nucleic Acids Res, 2011

doi:10.1093/nar/gkq1129.

Tissue-specific rewiring of signalling pathways through alternatively spliced disordered segments

Buljan M, Bateman A, Babu MM.

N Biotechnol, 2010

doi:10.1016/j.nbt.2010.01.034.

Time to underpin Wikipedia wisdom.

Bateman A, Logan DW.

Nature, 2010

doi:10.1038/468765c.

The systematic functional analysis of Plasmodium protein kinases identifies essential regulators of mosquito transmission.

Tewari R, Straschil U, Bateman A, Böhme U, Cherevach I, Gong P, Pain A, Billker O.

Cell Host Microbe, 2010

doi:10.1016/j.chom.2010.09.006.

The structure of Jann_2411 (DUF1470) from Jannaschia sp. at 1.45 Å resolution reveals a new fold (the ABATE domain) and suggests its possible role as a transcription regulator.

Bakolitsa C, Bateman A, Jin KK, McMullan D, Krishna SS, Miller MD, Abdubek P, Acosta C, Astakhova T, Axelrod HL, Burra P, Carlton D, Chiu HJ, Clayton T, Das D, Deller MC, Duan L, Elias Y, Feuerhelm J, Grant JC, Grzechnik A, Grzechnik SK, Han GW, Jaroszewski L, Klock HE, Knuth MW, Kozbial P, Kumar A, Marciano D, Morse AT, Murphy KD, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Reyes R, Rife CL, Sefcovic N, Tien H, Trame CB, Trout CV, van den Bedem H, Weekes D, White A, Xu Q, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley S, Wilson IA.

Acta Crystallogr Sect F Struct Biol Cryst Commun, 2010

doi:10.1107/s1744309109025196.

DUFs: families in search of function.

Bateman A, Coggill P, Finn RD.

Acta Crystallogr Sect F Struct Biol Cryst Commun, 2010

doi:10.1107/s1744309110001685.

Ten simple rules for editing Wikipedia.

Logan DW, Sandal M, Gardner PP, Manske M, Bateman A.

PLoS Comput Biol, 2010

doi:10.1371/journal.pcbi.1000941.

Quantifying the mechanisms of domain gain in animal proteins.

Buljan M, Frankish A, Bateman A.

Genome Biol, 2010

doi:10.1186/gb-2010-11-7-r74.

Curators of the world unite: the International Society of Biocuration.

Bateman A.

Bioinformatics, 2010

doi:10.1093/bioinformatics/btq101.

Dosage sensitivity shapes the evolution of copy-number varied regions.

Schuster-Böckler B, Conrad D, Bateman A.

PLoS One, 2010

doi:10.1371/journal.pone.0009474.

SnoPatrol: how many snoRNA genes are there?

Gardner PP, Bateman A, Poole AM.

J Biol, 2010

doi:10.1186/jbiol211.

The Pfam protein families database.

Finn RD, Mistry J, Tate J, Coggill P, Heger A, Pollington JE, Gavin OL, Gunasekaran P, Ceric G, Forslund K, Holm L, Sonnhammer EL, Eddy SR, Bateman A.

Nucleic Acids Res, 2010

doi:10.1093/nar/gkp985.

Bacterial pleckstrin homology domains: a prokaryotic origin for the PH domain.

Xu Q, Bateman A, Finn RD, Abdubek P, Astakhova T, Axelrod HL, Bakolitsa C, Carlton D, Chen C, Chiu HJ, Chiu M, Clayton T, Das D, Deller MC, Duan L, Ellrott K, Ernst D, Farr CL, Feuerhelm J, Grant JC, Grzechnik A, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Krishna SS, Kumar A, Marciano D, McMullan D, Miller MD, Morse AT, Nigoghossian E, Nopakun A, Okach L, Puckett C, Reyes R, Rife CL, Sefcovic N, Tien HJ, Trame CB, van den Bedem H, Weekes D, Wooten T, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA.

J Mol Biol, 2010

doi:10.1016/j.jmb.2009.11.006.

MEROPS: the peptidase database.

Rawlings ND, Barrett AJ, Bateman A.

Nucleic Acids Res, 2010

doi:10.1093/nar/gkp971.

The structure of pyogenecin immunity protein, a novel bacteriocin-like immunity protein from Streptococcus pyogenes.

Chang C, Coggill P, Bateman A, Finn RD, Cymborowski M, Otwinowski Z, Minor W, Volkart L, Joachimiak A.

BMC Struct Biol, 2009

doi:10.1186/1472-6807-9-75.

Ten simple rules for chairing a scientific session.

Bateman A, Bourne PE.

PLoS Comput Biol, 2009

doi:10.1371/journal.pcbi.1000517.

Pepsin homologues in bacteria.

Rawlings ND, Bateman A.

BMC Genomics, 2009

doi:10.1186/1471-2164-10-437.

The evolution of protein domain families.

Buljan M, Bateman A.

Biochem Soc Trans, 2009

doi:10.1042/bst0370751.

Cloud computing.

Bateman A, Wood M.

Bioinformatics, 2009

doi:10.1093/bioinformatics/btp274.

Bioinformatics for next generation sequencing.

Bateman A, Quackenbush J.

Bioinformatics, 2009

doi:10.1093/bioinformatics/btp037.

Phospholipid scramblases and Tubby-like proteins belong to a new superfamily of membrane tethered transcription factors.

Bateman A, Finn RD, Sims PJ, Wiedmer T, Biegert A, Söding J.

Bioinformatics, 2009

doi:10.1093/bioinformatics/btn595.

Rfam: updates to the RNA families database.

Gardner PP, Daub J, Tate JG, Nawrocki EP, Kolbe DL, Lindgreen S, Wilkinson AC, Finn RD, Griffiths-Jones S, Eddy SR, Bateman A.

Nucleic Acids Res, 2009

doi:10.1093/nar/gkn766.

InterPro: the integrative protein signature database.

Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L, Finn RD, Gough J, Haft D, Hulo N, Kahn D, Kelly E, Laugraud A, Letunic I, Lonsdale D, Lopez R, Madera M, Maslen J, McAnulla C, McDowall J, Mistry J, Mitchell A, Mulder N, Natale D, Orengo C, Quinn AF, Selengut JD, Sigrist CJ, Thimma M, Thomas PD, Valentin F, Wilson D, Wu CH, Yeats C.

Nucleic Acids Res, 2009

doi:10.1093/nar/gkn785.

Editorial

Nucleic Acids Res, 2008

doi:.

The RNA WikiProject: community annotation of RNA families.

Daub J, Gardner PP, Tate J, Ramsköld D, Manske M, Scott WG, Weinberg Z, Griffiths-Jones S, Bateman A.

RNA, 2008

doi:10.1261/rna.1200508.

Databases, data tombs and dust in the wind.

Wren JD, Bateman A.

Bioinformatics, 2008

doi:10.1093/bioinformatics/btn464.

Identifying protein domains with the Pfam database.

Coggill P, Finn RD, Bateman A.

Curr Protoc Bioinformatics, 2008

doi:10.1002/0471250953.bi0205s23.

The evolution of the DLK1-DIO3 imprinted domain in mammals.

Edwards CA, Mungall AJ, Matthews L, Ryder E, Gray DJ, Pask AJ, Shaw G, Graves JA, Rogers J, SAVOIR consortium, Dunham I, Renfree MB, Ferguson-Smith AC.

PLoS Biol, 2008

doi:10.1371/journal.pbio.0060135.

Pfam 10 years on: 10,000 families and still growing.

Sammut SJ, Finn RD, Bateman A.

Brief Bioinform, 2008

doi:10.1093/bib/bbn010.

Large-scale screening for novel low-affinity extracellular protein interactions.

Bushell KM, Söllner C, Schuster-Boeckler B, Bateman A, Wright GJ.

Genome Res, 2008

doi:10.1101/gr.7187808.

Protein interactions in human genetic diseases.

Schuster-Böckler B, Bateman A.

Genome Biol, 2008

doi:10.1186/gb-2008-9-1-r9.

The Pfam protein families database.

Finn RD, Tate J, Mistry J, Coggill PC, Sammut SJ, Hotz HR, Ceric G, Forslund K, Eddy SR, Sonnhammer EL, Bateman A.

Nucleic Acids Res, 2008

doi:10.1093/nar/gkm960.

An introduction to hidden Markov models.

Schuster-Böckler B, Bateman A.

Curr Protoc Bioinformatics, 2007

doi:10.1002/0471250953.bia03as18.

Predicting active site residue annotations in the Pfam database.

Mistry J, Bateman A, Finn RD.

BMC Bioinformatics, 2007

doi:10.1186/1471-2105-8-298.

Reuse of structural domain-domain interactions in protein networks.

Schuster-Böckler B, Bateman A.

BMC Bioinformatics, 2007

doi:10.1186/1471-2105-8-259.

The tify family previously known as ZIM.

Vanholme B, Grunewald W, Bateman A, Kohchi T, Gheysen G.

Trends Plant Sci, 2007

doi:10.1016/j.tplants.2007.04.004.

SCOOP: a simple method for identification of novel protein superfamily relationships.

Bateman A, Finn RD.

Bioinformatics, 2007

doi:10.1093/bioinformatics/btm034.

New developments in the InterPro database.

Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Buillard V, Cerutti L, Copley R, Courcelle E, Das U, Daugherty L, Dibley M, Finn R, Fleischmann W, Gough J, Haft D, Hulo N, Hunter S, Kahn D, Kanapin A, Kejariwal A, Labarga A, Langendijk-Genevaux PS, Lonsdale D, Lopez R, Letunic I, Madera M, Maslen J, McAnulla C, McDowall J, Mistry J, Mitchell A, Nikolskaya AN, Orchard S, Orengo C, Petryszak R, Selengut JD, Sigrist CJ, Thomas PD, Valentin F, Wilson D, Wu CH, Yeats C.

Nucleic Acids Res, 2007

doi:10.1093/nar/gkl841.

Structural genomics meets computational biology.

Bateman A, Valencia A.

Bioinformatics, 2006

doi:10.1093/bioinformatics/btl426.

Metazoan Scc4 homologs link sister chromatid cohesion to cell and axon migration guidance.

Seitan VC, Banks P, Laval S, Majid NA, Dorsett D, Rana A, Smith J, Bateman A, Krpic S, Hostert A, Rollins RA, Erdjument-Bromage H, Tempst P, Benard CY, Hekimi S, Newbury SF, Strachan T.

PLoS Biol, 2006

doi:10.1371/journal.pbio.0040242.

Pfam: clans, web tools and services.

Finn RD, Mistry J, Schuster-Böckler B, Griffiths-Jones S, Hollich V, Lassmann T, Moxon S, Marshall M, Khanna A, Durbin R, Eddy SR, Sonnhammer EL, Bateman A.

Nucleic Acids Res, 2006

doi:10.1093/nar/gkj149.

miRBase: microRNA sequences, targets and gene nomenclature.

Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ.

Nucleic Acids Res, 2006

doi:10.1093/nar/gkj112.

Gene Families

Bateman A, Mifsud W.

2005

doi:10.1038/npg.els.0005045.

EDITORIAL

Nucleic Acids Res, 2005

doi:.

Visualizing profile-profile alignment: pairwise HMM logos.

Schuster-Böckler B, Bateman A.

Bioinformatics, 2005

doi:10.1093/bioinformatics/bti434.

The G5 domain: a potential N-acetylglucosamine recognition domain involved in biofilm formation.

Bateman A, Holden MT, Yeats C.

Bioinformatics, 2005

doi:10.1093/bioinformatics/bti206.

iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions.

Finn RD, Marshall M, Bateman A.

Bioinformatics, 2005

doi:10.1093/bioinformatics/bti011.

InterPro, progress and status in 2005.

Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bradley P, Bork P, Bucher P, Cerutti L, Copley R, Courcelle E, Das U, Durbin R, Fleischmann W, Gough J, Haft D, Harte N, Hulo N, Kahn D, Kanapin A, Krestyaninova M, Lonsdale D, Lopez R, Letunic I, Madera M, Maslen J, McDowall J, Mitchell A, Nikolskaya AN, Orchard S, Pagni M, Ponting CP, Quevillon E, Selengut J, Sigrist CJ, Silventoinen V, Studholme DJ, Vaughan R, Wu CH.

Nucleic Acids Res, 2005

doi:10.1093/nar/gki106.

Rfam: annotating non-coding RNAs in complete genomes.

Griffiths-Jones S, Moxon S, Marshall M, Khanna A, Eddy SR, Bateman A.

Nucleic Acids Res, 2005

doi:10.1093/nar/gki081.

Editorial

Nucleic Acids Res, 2004

doi:.

Novel protein domains and motifs in the marine planctomycete Rhodopirellula baltica.

Studholme DJ, Fuerst JA, Bateman A.

FEMS Microbiol Lett, 2004

doi:10.1016/j.femsle.2004.06.007.

The Pfam protein families database.

Bateman A, Coin L, Durbin R, Finn RD, Hollich V, Griffiths-Jones S, Khanna A, Marshall M, Moxon S, Sonnhammer EL, Studholme DJ, Yeats C, Eddy SR.

Nucleic Acids Res, 2004

doi:10.1093/nar/gkh121.

The Hotdog fold: wrapping up a superfamily of thioesterases and dehydratases.

Dillon SC, Bateman A.

BMC Bioinformatics, 2004

doi:10.1186/1471-2105-5-109.

Enhanced protein domain discovery using taxonomy.

Coin L, Bateman A, Durbin R.

BMC Bioinformatics, 2004

doi:10.1186/1471-2105-5-56.

The PepSY domain: a regulator of peptidase activity in the microbial environment?

Yeats C, Rawlings ND, Bateman A.

Trends Biochem Sci, 2004

doi:10.1016/j.tibs.2004.02.004.

Identifying protein domains with the Pfam database.

Finn R, Griffiths-Jones S, Bateman A.

Curr Protoc Bioinformatics, 2003

doi:10.1002/0471250953.bi0205s01.

Enhanced protein domain discovery by using language modeling techniques from speech recognition.

Coin L, Bateman A, Durbin R.

Proc Natl Acad Sci U S A, 2003

doi:10.1073/pnas.0737502100.

Characterization of the nodulation plasmid encoded chemoreceptor gene mcpG from Rhizobium leguminosarum.

Yost CK, Clark KT, Del Bel KL, Hynes MF.

BMC Microbiol, 2003

doi:10.1186/1471-2180-3-1.

A comparison of Pfam and MEROPS: two databases, one comprehensive, and one specialised.

Studholme DJ, Rawlings ND, Barrett AJ, Bateman A.

BMC Bioinformatics, 2003

doi:10.1186/1471-2105-4-17.

Rfam: an RNA family database.

Griffiths-Jones S, Bateman A, Marshall M, Khanna A, Eddy SR.

Nucleic Acids Res, 2003

doi:10.1093/nar/gkg006.

The InterPro Database, 2003 brings increased coverage and new features.

Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Barrell D, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley RR, Courcelle E, Das U, Durbin R, Falquet L, Fleischmann W, Griffiths-Jones S, Haft D, Harte N, Hulo N, Kahn D, Kanapin A, Krestyaninova M, Lopez R, Letunic I, Lonsdale D, Silventoinen V, Orchard SE, Pagni M, Peyruc D, Ponting CP, Selengut JD, Servant F, Sigrist CJ, Vaughan R, Zdobnov EM.

Nucleic Acids Res, 2003

doi:10.1093/nar/gkg046.

The TROVE module: a common element in Telomerase, Ro and Vault ribonucleoproteins.

Bateman A, Kickhoefer V.

BMC Bioinformatics, 2003

doi:10.1186/1471-2105-4-49.

The BON domain: a putative membrane-binding domain.

Yeats C, Bateman A.

Trends Biochem Sci, 2003

doi:10.1016/s0968-0004(03)00115-4.

The CHAP domain: a large family of amidases including GSP amidase and peptidoglycan hydrolases.

Bateman A, Rawlings ND.

Trends Biochem Sci, 2003

doi:10.1016/s0968-0004(03)00061-6.

The SGS3 protein involved in PTGS finds a family.

Bateman A.

BMC Bioinformatics, 2002

doi:10.1186/1471-2105-3-21.

Membrane-bound progesterone receptors contain a cytochrome b5-like ligand-binding domain.

Mifsud W, Bateman A.

Genome Biol, 2002

doi:10.1186/gb-2002-3-12-research0068.

QuickTree: building huge Neighbour-Joining trees of protein sequences.

Howe K, Bateman A, Durbin R.

Bioinformatics, 2002

doi:10.1093/bioinformatics/18.11.1546.

HMM-based databases in InterPro.

Bateman A, Haft DH.

Brief Bioinform, 2002

doi:10.1093/bib/3.3.236.

InterPro: an integrated documentation resource for protein families, domains and functional sites.

Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley R, Courcelle E, Durbin R, Falquet L, Fleischmann W, Gouzy J, Griffith-Jones S, Haft D, Hermjakob H, Hulo N, Kahn D, Kanapin A, Krestyaninova M, Lopez R, Letunic I, Orchard S, Pagni M, Peyruc D, Ponting CP, Servant F, Sigrist CJ, InterPro Consortium.

Brief Bioinform, 2002

doi:10.1093/bib/3.3.225.

The PASTA domain: a beta-lactam-binding domain.

Yeats C, Finn RD, Bateman A.

Trends Biochem Sci, 2002

doi:10.1016/s0968-0004(02)02164-3.

The use of structure information to increase alignment accuracy does not aid homologue detection with profile HMMs.

Griffiths-Jones S, Bateman A.

Bioinformatics, 2002

doi:10.1093/bioinformatics/18.9.1243.

Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2).

Bentley SD, Chater KF, Cerdeño-Tárraga AM, Challis GL, Thomson NR, James KD, Harris DE, Quail MA, Kieser H, Harper D, Bateman A, Brown S, Chandra G, Chen CW, Collins M, Cronin A, Fraser A, Goble A, Hidalgo J, Hornsby T, Howarth S, Huang CH, Kieser T, Larke L, Murphy L, Oliver K, O'Neil S, Rabbinowitsch E, Rajandream MA, Rutherford K, Rutter S, Seeger K, Saunders D, Sharp S, Squares R, Squares S, Taylor K, Warren T, Wietzorrek A, Woodward J, Barrell BG, Parkhill J, Hopwood DA.

Nature, 2002

doi:10.1038/417141a.

The ENTH domain.

De Camilli P, Chen H, Hyman J, Panepucci E, Bateman A, Brunger AT.

FEBS Lett, 2002

doi:10.1016/s0014-5793(01)03306-3.

The Pfam protein families database.

Bateman A, Birney E, Cerruti L, Durbin R, Etwiller L, Eddy SR, Griffiths-Jones S, Howe KL, Marshall M, Sonnhammer EL.

Nucleic Acids Res, 2002

doi:10.1093/nar/30.1.276.

CASP2 knowledge-based approach to distant homology recognition and fold prediction in CASP4.

Murzin AG, Bateman A.

Proteins, 2001

doi:10.1002/prot.10037.

Initial sequencing and analysis of the human genome.

Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, Kann L, Lehoczky J, LeVine R, McEwan P, McKernan K, Meldrim J, Mesirov JP, Miranda C, Morris W, Naylor J, Raymond C, Rosetti M, Santos R, Sheridan A, Sougnez C, Stange-Thomann Y, Stojanovic N, Subramanian A, Wyman D, Rogers J, Sulston J, Ainscough R, Beck S, Bentley D, Burton J, Clee C, Carter N, Coulson A, Deadman R, Deloukas P, Dunham A, Dunham I, Durbin R, French L, Grafham D, Gregory S, Hubbard T, Humphray S, Hunt A, Jones M, Lloyd C, McMurray A, Matthews L, Mercer S, Milne S, Mullikin JC, Mungall A, Plumb R, Ross M, Shownkeen R, Sims S, Waterston RH, Wilson RK, Hillier LW, McPherson JD, Marra MA, Mardis ER, Fulton LA, Chinwalla AT, Pepin KH, Gish WR, Chissoe SL, Wendl MC, Delehaunty KD, Miner TL, Delehaunty A, Kramer JB, Cook LL, Fulton RS, Johnson DL, Minx PJ, Clifton SW, Hawkins T, Branscomb E, Predki P, Richardson P, Wenning S, Slezak T, Doggett N, Cheng JF, Olsen A, Lucas S, Elkin C, Uberbacher E, Frazier M, Gibbs RA, Muzny DM, Scherer SE, Bouck JB, Sodergren EJ, Worley KC, Rives CM, Gorrell JH, Metzker ML, Naylor SL, Kucherlapati RS, Nelson DL, Weinstock GM, Sakaki Y, Fujiyama A, Hattori M, Yada T, Toyoda A, Itoh T, Kawagoe C, Watanabe H, Totoki Y, Taylor T, Weissenbach J, Heilig R, Saurin W, Artiguenave F, Brottier P, Bruls T, Pelletier E, Robert C, Wincker P, Smith DR, Doucette-Stamm L, Rubenfield M, Weinstock K, Lee HM, Dubois J, Rosenthal A, Platzer M, Nyakatura G, Taudien S, Rump A, Yang H, Yu J, Wang J, Wang J, Huang G, Gu J, Hood L, Rowen L, Madan A, Qin S, Davis RW, Federspiel NA, Abola AP, Proctor MJ, Myers RM, Schmutz J, Dickson M, Grimwood J, Cox DR, Olson MV, Kaul R, Raymond C, Shimizu N, Kawasaki K, Minoshima S, Evans GA, Athanasiou M, Schultz R, Roe BA, Chen F, Pan H, Ramser J, Lehrach H, Reinhardt R, McCombie WR, de la Bastide M, Dedhia N, Blöcker H, Hornischer K, Nordsiek G, Agarwala R, Aravind L, Bailey JA, Bateman A, Batzoglou S, Birney E, Bork P, Brown DG, Burge CB, Cerutti L, Chen HC, Church D, Clamp M, Copley RR, Doerks T, Eddy SR, Eichler EE, Furey TS, Galagan J, Gilbert JG, Harmon C, Hayashizaki Y, Haussler D, Hermjakob H, Hokamp K, Jang W, Johnson LS, Jones TA, Kasif S, Kaspryzk A, Kennedy S, Kent WJ, Kitts P, Koonin EV, Korf I, Kulp D, Lancet D, Lowe TM, McLysaght A, Mikkelsen T, Moran JV, Mulder N, Pollara VJ, Ponting CP, Schuler G, Schultz J, Slater G, Smit AF, Stupka E, Szustakowki J, Thierry-Mieg D, Thierry-Mieg J, Wagner L, Wallis J, Wheeler R, Williams A, Wolf YI, Wolfe KH, Yang SP, Yeh RF, Collins F, Guyer MS, Peterson J, Felsenfeld A, Wetterstrand KA, Patrinos A, Morgan MJ, de Jong P, Catanese JJ, Osoegawa K, Shizuya H, Choi S, Chen YJ, Szustakowki J, International Human Genome Sequencing Consortium.

Nature, 2001

doi:10.1038/35057062.