Targeted volume correlative light and electron microscopy of an environmental marine microorganism.

Mocaer K, Mizzon G, Gunkel M, Halavatyi A, Steyer A, Oorschot V, Schorb M, Le Kieffre C, Yee DP, Chevalier F, Gallet B, Decelle J, Schwab Y, Ronchi P

Journal of cell science, 2023

doi:10.1242/jcs.261355.

Hyperparameter optimization for image analysis: application to prostate tissue images and live cell data of virus-infected cells.

Ritter C, Wollmann T, Bernhard P, Gunkel M, Braun DM, Lee JI, Meiners J, Simon R , Sauter G, Erfle H, Rippe K, Bartenschlager R, Rohr K

International journal of computer assisted radiology and surgery, 2019

doi:10.1007/s11548-019-02010-3.

High-density cell arrays for genome-ccale phenotypic screening.

Starkuviene V, Kallenberger SM, Beil N , Lisauskas T, Schumacher BSS, Bulkescher R, Wajda P, Gunkel M, Beneke J, Erfle H

SLAS discovery : advancing life sciences R & D, 2019

doi:10.1177/2472555218818757.

GRUU-Net: Integrated convolutional and gated recurrent neural network for cell segmentation.

Wollmann T , Gunkel M, Chung I, Erfle H, Rippe K, Rohr K

Medical image analysis, 2019

doi:10.1016/j.media.2019.04.011.

Comparison of cell arrays and multi-well plates in microscopy-based screening.

Becker AK, Erfle H, Gunkel M, Beil N, Kaderali L, Starkuviene V

High-throughput, 2018

doi:10.3390/ht7020013.

Impact of the assembly-activating protein on molecular evolution of synthetic adeno-associated virus capsids.

Herrmann AK, Große S, Börner K, Krämer C, Wiedtke E, Gunkel M, Grimm D

Human gene therapy, 2018

doi:10.1089/hum.2018.085.

Super-resolution microscopy techniques and their potential for applications in rradiation biophysics.

Eberle JP, Rapp A, Krufczik M, Eryilmaz M, Gunkel M, Erfle H, Hausmann M

Methods in molecular biology (Clifton, N.J.), 2017

doi:10.1007/978-1-4939-7265-4_1.

Quantification of telomere features in tumor tissue sections by an automated 3D imaging-based workflow.

Gunkel M, Chung I, Wörz S, Deeg KI, Simon R, Sauter g , Jones DTW , Korshunov A, Rohr K, Erfle H, Rippe K

Methods (San Diego, Calif.), 2016

doi:10.1016/j.ymeth.2016.09.014.

Fully automated targeted confocal and single-molecule localization microscopy.

Eberle JP, Muranyi W, Erfle H, Gunkel M

Methods in molecular biology (Clifton, N.J.), 2017

doi:10.1007/978-1-4939-7265-4_12.

Relevance of assembly-activating protein for adeno-associated virus vector production and capsid protein stability in mammalian and insect cells.

Grosse S, Budloo MP, Herrmann AK, Börner K, Fakhiri J, Laketa V, Krämer C, Wiedtke E, Gunkel M, Ménard L, Ayuso E Grimm D

Journal of virology, 2017

doi:10.1128/jvi.01198-17.

Fluorescence-based high-throughput and targeted image acquisition and analysis for phenotypic screening.

Gunkel M, Eberle JP, Erfle H

Methods in molecular biology (Clifton, N.J.), 2017

doi:10.1007/978-1-4939-6810-7_17.

Localisation microscopy of breast epithelial ErbB-2 receptors and gap junctions: trafficking after γ-irradiation, neuregulin-1β, and trastuzumab application.

Pilarczyk G, Nesnidal I, Gunkel M, Bach M, Bestvater F, Hausmann M

International journal of molecular sciences, 2017

doi:10.3390/ijms18020362.

Workflows for microscopy image analysis and cellular phenotyping.

Wollmann T, Erfle H, Eils R, Rohr K, Gunkel M

Journal of biotechnology, 2017

doi:10.1016/j.jbiotec.2017.07.019.

High-content analysis of the golgi complex by correlative screening microscopy.

Gunkel M, Erfle H, Starkuviene V

Methods in molecular biology (Clifton, N.J.), 2016

doi:10.1007/978-1-4939-6463-5_9.

Tissue-mimicking geometrical constraints stimulate tissue-like constitution and activity of mouse neonatal and human-induced pluripotent stem cell-derived cardiac myocytes.

Pilarczyk G, Raulf A, Gunkel M, Fleischmann BK, Lemor R, Hausmann M

Journal of functional biomaterials, 2016

doi:10.3390/jfb7010001.

Fluorescence microscopy-based RNA interference screening.

Gunkel M, Beil N, Beneke J, Reymann J, Erfle H

Methods in molecular biology (Clifton, N.J.), 2015

doi:10.1007/978-1-4939-2080-8_4.

Application perspectives of localization microscopy in virology.

Cremer C, Kaufmann R, Gunkel M, Polanski F, Müller P, Dierkes R, Degenhard S, Wege S, Hausmann M, Birk U

Histochemistry and cell biology, 2014

doi:10.1007/s00418-014-1203-4.

Integrated and correlative high-throughput and super-resolution microscopy.

Manuel G, Flottmann B, Heilemann M, Reymann J, Erfle H

Histochemistry and cell biology, 2014

doi:10.1007/s00418-014-1209-y.

Spatial distribution and structural arrangement of a murine cytomegalovirus glycoprotein detected by SPDM localization microscopy.

Müller P, Lemmermann NA, Kaufmann R, Gunkel M, Paech D, Hildenbrand G, Holtappels R, Cremer C, Hausmann M

Histochemistry and cell biology, 2014

doi:10.1007/s00418-014-1185-2.

Correlative light microscopy for high-content screening.

Benjamin F, Gunkel M, Lisauskas T, Heilemann M, Starkuviene V, Reymann J, Erfle H

BioTechniques, 2013

doi:10.2144/000114099.

Superresolution imaging of biological nanostructures by spectral precision distance microscopy.

Cremer C, Kaufmann R, Gunkel M, Pres S, Weiland S, Müller P, Ruckelshausen T, Lemmer P, Geiger F, Degenhard S, Wege C, Lemmermann NAW, Holtappels R, Strickfaden H, Hausmann M

Biotechnology journal, 2011

doi:10.1002/biot.201100031.

Localization microscopy reveals expression-dependent parameters of chromatin nanostructure.

Bohn M, Diesinger P, Kaufmann R, Weiland Y, Müller P, Gunkel M, von Ketteler A, Lemmer P, Hausmann M, Heermann DW, Cremer C

Biophysical journal, 2010

doi:10.1016/j.bpj.2010.05.043.

Functional nuclear organization of transcription and DNA replication: a topographical marriage between chromatin domains and the interchromatin compartment.

Markaki Y, Gunkel M, Schermelleh L, Beichmanis S, Neumann J, Heidemann M, Leonhardt H, Eick D, Cremer C, Cremer T

Cold Spring Harbor symposia on quantitative biology, 2010

doi:10.1101/sqb.2010.75.042.

Dual color localization microscopy of cellular nanostructures.

Gunkel M, Erdel F, Rippe K, Lemmer P, Kaufmann R, Hörmann C, Amberger R, Cremer C

Biotechnology journal, 2009

doi:10.1002/biot.200900005.

Using conventional fluorescent markers for far-field fluorescence localization nanoscopy allows resolution in the 10-nm range.

Lemmer P, Gunkel M , Weiland Y, Müller P, Baddeley D, Kaufmann R, Urich A, Eipel H, Amberger R, Hausmann M, Cremer C

Journal of microscopy, 2009

doi:10.1111/j.1365-2818.2009.03196.x.

SPDM: light microscopy with single-molecule resolution at the nanoscale.

Lemmer P, Gunkel M, Baddeley D, Kaufmann R, Urich A, Weiland Y, Reymann J, Müller P, Hausmann M, Cremer C

Applied Physics B, 2008

doi:10.1007/s00340-008-3152-x.

High-precision structural analysis of subnuclear complexes in fixed and live cells via spatially modulated illumination (SMI) microscopy.

Reymann J, Baddeley D, Gunkel M, Lemmer P, Stadter W, Jegou T, Rippe K, Cremer C, Birk U

Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology, 2008

doi:10.1007/s10577-008-1238-2.