Woo S, Saka SK, Xuan F, Yin P
Nature communications,
2024
doi:10.1038/s41467-024-46978-2.
Marconato L, Palla G, Yamauchi KA, Virshup I, Heidari E, Treis T, Vierdag WM, Toth M, Stockhaus S, Shrestha RB, Rombaut B, Pollaris L, Lehner L, Vöhringer H, Kats I, Saeys Y, Saka SK, Huber W, Gerstung M, Moore J, Theis FJ, Stegle O
Nature methods,
2024
doi:10.1038/s41592-024-02212-x.
Vierdag WAM, Saka SK
Frontiers in bioinformatics,
2024
doi:10.3389/fbinf.2024.1336257.
Hong F, Kishi JY, Delgado RN, Jeong J, Saka SK, Su H, Cepko CL, Yin P
Nature methods,
2023
doi:10.1038/s41592-023-02115-3.
Alexandrov T, Saez-Rodriguez J, Saka SK
Molecular systems biology,
2023
doi:10.15252/msb.202110571.
Kishi JY, Liu N, West ER, Sheng K, Jordanides JJ, Serrata M, Cepko CL, Saka SK, Yin P
Nature methods,
2022
doi:10.1038/s41592-022-01604-1.
Schaefer IM, Hemming ML, Lundberg MZ, Serrata MP, Goldaracena I, Liu N, Yin P, Paulo JA, Gygi SP, George S, Morgan JA, Bertagnolli MM, Sicinska ET, Chu C, Zheng S, Mariño-Enríquez A, Hornick JL, Raut CP, Ou WB, Demetri GD, Saka SK, Fletcher JA
British journal of cancer,
2022
doi:10.1038/s41416-022-01990-5.
Hickey JW, Neumann EK, Radtke AJ, Camarillo JM, Beuschel RT, Albanese A, McDonough E, Hatler J, Wiblin AE, Fisher J, Croteau J, Small EC, Sood A, Caprioli RM, Angelo RM, Nolan GP, Chung K, Hewitt SM, Germain RN, Spraggins JM, Lundberg E, Snyder MP, Kelleher NL, Saka SK
Nature methods,
2021
doi:10.1038/s41592-021-01316-y.
Wang Y, Zeng Y, Saka SK, Xie W, Goldaracena I, Kohman RE, Yin P, Church GM
2020
doi:10.1101/274456.
Youngeun Kim, Yaseen AB, Kishi JY, Saka SK, Sheng K, Gopalkrishnan N, Schaus TE, Yin P
medRxiv,
2020
doi:10.1101/2020.08.17.20177006.
Liu N, Dai M, Saka SK, Yin P
Nature chemistry,
2019
doi:10.1038/s41557-019-0325-7.
Saka SK, Wang Y, Kishi JY, Zhu A, Zeng Y, Xie W, Kirli K, Yapp C, Cicconet M, Beliveau BJ, Lapan SW, Yin S, Lin M, Boyden ES, Kaeser PS, Pihan G, Church GM, Yin P
Nature biotechnology,
2019
doi:10.1038/s41587-019-0207-y.
HuBMAP Consortium (Snyder MP, Lin S, Posgai A, Atkinson M, Regev A, Rood J, Rozenblatt-Rosen O, Gaffney L, Hupalowska A, Satija R, Gehlenborg N, Shendure J, Laskin J, Harbury P, Nystrom NA, Silverstein JC, Bar-Joseph Z, Zhang K, Borner K, Lin Y, Conroy R, Procaccini D, Roy AL, Pillai A, Brown M, Galis ZS, Cai L, Shendure J, Trapnell C, Lin S, Jackson D, Snyder MP, Nolan G, Greenleaf WJ, Lin Y, Plevritis S, Ahadi S, Nevins SA, Lee H, Schuerch CM, Black S, Venkataraaman VG, Esplin E, Horning A, Bahmani A, Zhang K, Sun X, Jain S, Hagood J, Pryhuber G, Kharchenko P, Atkinson M, Bodenmiller B, Brusko T, Clare-Salzler M, Nick H, Otto K, Posgai A, Wasserfall C, Jorgensen M, Brusko M, Maffioletti S, Caprioli RM, Spraggins JM, Gutierrez D, Patterson NH, Neumann EK, Harris R, deCaestecker M, Fogo AB, van de Plas R, Lau K, Cai L, Yuan GC, Zhu Q, Dries R, Yin P, Saka SK, Kishi JY, Wang Y, Goldaracena I, Laskin J, Ye DY, Burnum-Johnson KE, Piehowski PD, Ansong C, Zhu Y, Harbury P, Desai T, Mulye J, Chou P, Nagendran M, Bar-Joseph Z, Teichmann SA, Paten B, Murphy RF, Ma J, Kiselev VY, Kingsford C, Ricarte A, Keays M, Akoju SA, Ruffalo M, Gehlenborg N, Kharchenko P, Vella M, McCallum C, Borner K, Cross LE, Friedman SH, Heiland R, Herr B, Macklin P, Quardokus EM, Record L, Sluka JP, Weber GM, Nystrom NA, Silverstein JC, Blood PD, Ropelewski AJ, Shirey WE, Scibek RM, Mabee P, Lenhardt WC, Robasky K, Michailidis S, Satija R, Marioni J, Regev A, Butler A, Stuart T, Fisher E, Ghazanfar S, Rood J, Gaffney L, Eraslan G, Biancalani T, Vaishnav ED, Conroy R, Procaccini D, Roy A, Pillai A, Brown M, Galis Z, Srinivas P, Pawlyk A, Sechi S, Wilder E, Anderson J)
NATURE,
2019
doi:10.1038/s41586-019-1629-x.
Kishi JY, Lapan SW, Beliveau BJ, West ER, Zhu A, Sasaki HM, Saka SK, Wang Y, Cepko CL, Yin P
Nature methods,
2019
doi:10.1038/s41592-019-0404-0.
Beliveau BJ, Kishi JY, Nir G, Sasaki HM, Saka SK, Nguyen SC, Wu CT, Yin P
Proceedings of the National Academy of Sciences of the United States of America,
2018
doi:10.1073/pnas.1714530115.
Schueder F, Lara-Gutiérrez J, Beliveau BJ, Saka SK, Sasaki HM, Woehrstein JB, Strauss MT, Grabmayr H, Yin P, Jungmann R
Nature communications,
2017
doi:10.1038/s41467-017-02028-8.
Kabatas S, Vreja IC, Saka SK, Höschen C, Kröhnert K, Opazo F, Rizzoli SO, Diederichsen U
Chemical communications (Cambridge, England),
2015
doi:10.1039/c5cc03895b.
Ta H, Keller J, Haltmeier M, Saka SK, Schmied J, Opazo F, Tinnefeld P, Munk A, Hell SW
Nature communications,
2015
doi:10.1038/ncomms8977.
Vreja IC, Kabatas S, Saka SK, Kröhnert K, Höschen C, Opazo F, Diederichsen U, Rizzoli SO
Angewandte Chemie (International ed. in English),
2015
doi:10.1002/anie.201411692.
Saka SK, Honigmann A, Eggeling C, Hell SW, Lang T, Rizzoli SO
Nature communications,
2014
doi:10.1038/ncomms5509.
Saka SK, Vogts A, Kröhnert K, Hillion F, Rizzoli SO, Wessels JT
Nature communications,
2014
doi:10.1038/ncomms4664.
Saka S, Rizzoli SO
BioEssays : news and reviews in molecular, cellular and developmental biology,
2012
doi:10.1002/bies.201100080.