A subgroup of light-driven sodium pumps with an additional Schiff base counterion.

Podoliak E, Lamm GHU, Marin E, Schellbach AV, Fedotov DA, Stetsenko A, Asido M, Maliar N, Bourenkov G, Balandin T, Baeken C, Astashkin R, Schneider TR, Bateman A, Wachtveitl J, Schapiro I, Busskamp V, Guskov A, Gordeliy V, Alekseev A, Kovalev K

Nature communications, 2024

doi:10.1038/s41467-024-47469-0.

CryoRhodopsins: a comprehensive characterization of a group of microbial rhodopsins from cold environments.

Lamm G, Marin E, Alekseev A, Schellbach A, Stetsenko A, Bourenkov G, Borshchevskiy V, Asido M, Agthe M, Engilberge S, Rose S, Caramello N, Royant A, Schneider TR, Bateman A, Mager T, Moser T, Wachtveitl J, Guskov A, Kovalev K

bioRxiv, 2024

doi:10.1101/2024.01.15.575777.

Custom design of a humidifier chamber for In Meso crystallization.

Marin E, Kovalev K, Poelman T, Veenstra R, Borshchevskiy V, Guskov A

Crystal growth & design, 2024

doi:10.1021/acs.cgd.3c01034.

Corrigendum to "Optogenetic cytosol acidification of mammalian cells using an inward proton-pumping rhodopsin" [Int. J. Biol. Macromol. Volume 242, Part 3, 1 July 2023, 124949].

Vlasova A, Polyakova A, Gromova A, Dolotova S, Bukhalovich S, Bagaeva D, Bondarev N, Tsybrov F, Kovalev K, Mikhailov A, Sidorov D, Bogorodskiy A, Ilyinsky N, Kuklin A, Vlasov A, Borshchevskiy V, Ivanovich V

International journal of biological macromolecules, 2023

doi:10.1016/j.ijbiomac.2023.125825.

Mechanisms of inward transmembrane proton translocation.

Kovalev K, Tsybrov F, Alekseev A, Shevchenko V, Soloviov D, Siletsky S, Bourenkov G, Agthe M, Nikolova M, von Stetten D, Astashkin R, Bukhdruker S, Chizhov I, Royant A, Kuzmin A, Gushchin I, Rosselli R, Rodriguez-Valera F, Ilyinskiy N, Rogachev A, Borshchevskiy V, Schneider TR, Bamberg E, Gordeliy V

Nature structural & molecular biology, 2023

doi:10.1038/s41594-023-01020-9.

Flotillin-associated rhodopsin (FArhodopsin), a widespread paralog of proteorhodopsin in aquatic bacteria with streamlined genomes.

Haro-Moreno JM, López-Pérez M, Alekseev A, Podoliak E, Kovalev K, Gordeliy V, Stepanauskas R, Rodriguez-Valera F

mSystems, 2023

doi:10.1128/msystems.00008-23.

Optogenetic cytosol acidification of mammalian cells using an inward proton-pumping rhodopsin.

Vlasova A, Polyakova A, Gromova A, Dolotova S, Bukhalovich S, Bagaeva D, Bondarev N, Tsybrov F, Kovalev K, Mikhailov A, Sidorov D, Bogorodskiy A, Ilyinsky N, Kuklin A, Vlasov A, Borshchevskiy V, Ivanovich V

International journal of biological macromolecules, 2023

doi:10.1016/j.ijbiomac.2023.124949.

Mirror proteorhodopsins.

Okhrimenko IS, Kovalev K, Petrovskaya LE, Ilyinsky NS, Alekseev AA, Marin E, Rokitskaya TI, Antonenko YN, Siletsky SA, Popov PA, Zagryadskaya YA, Soloviov DV, Chizhov IV, Zabelskii DV, Ryzhykau YL, Vlasov AV, Kuklin AI, Bogorodskiy AO, Mikhailov AE, Sidorov DV, Bukhalovich S, Tsybrov F, Bukhdruker S, Vlasova AD, Borshchevskiy VI, Dolgikh DA, Kirpichnikov MP, Bamberg E, Gordeliy VI

Communications Chemistry, 2023

doi:10.1038/s42004-023-00884-8.

Structural insights into thrombolytic activity of destabilase from medicinal leech.

Marin E, Kornilov DA, Bukhdruker SS, Aleksenko VA, Manuvera VA, Zinovev EV, Kovalev KV, Shevtsov MB, Talyzina AA, Bobrovsky PA, Kuzmichev PK, Mishin AV, Gushchin IY, Lazarev VN, Borshchevskiy VI

Scientific reports, 2023

doi:10.1038/s41598-023-32459-x.

Structural insights into 3Fe-4S ferredoxins diversity in M. tuberculosis highlighted by a first redox complex with P450.

Gilep A, Varaksa T, Bukhdruker S, Kavaleuski A, Ryzhykau Y, Smolskaya S, Sushko T, Tsumoto K, Grabovec I, Kapranov I, Okhrimenko I, Marin E, Shevtsov M, Mishin A, Kovalev K, Kuklin A, Gordeliy V, Kaluzhskiy L, Gnedenko O, Yablokov E, Ivanov A, Borshchevskiy V, Strushkevich N

Frontiers in molecular biosciences, 2023

doi:10.3389/fmolb.2022.1100032.

Structural insights into the effects of glycerol on ligand binding to cytochrome P450.

Bukhdruker S, Varaksa T, Orekhov P, Grabovec I, Marin E, Kapranov I, Kovalev K, Astashkin R, Kaluzhskiy L, Ivanov A, Mishin A, Rogachev A, Gordeliy V, Gilep A, Strushkevich N, Borshchevskiy V

Acta crystallographica. Section D, Structural biology, 2023

doi:10.1107/s2059798322011019.

Structural insights into light-driven anion pumping in cyanobacteria.

Astashkin R, Kovalev K, Bukhdruker S, Vaganova S, Kuzmin A, Alekseev A, Balandin T, Zabelskii D, Gushchin I, Royant A, Volkov D, Bourenkov G, Koonin E, Engelhard M, Bamberg E, Gordeliy V

Nature communications, 2022

doi:10.1038/s41467-022-34019-9.

Structural basis for receptor selectivity and inverse agonism in S1P 5 receptors.

Lyapina E, Marin E, Gusach A, Orekhov P, Gerasimov A, Luginina A, Vakhrameev D, Ergasheva M, Kovaleva M, Khusainov G, Khorn P, Shevtsov M, Kovalev K, Bukhdruker S, Okhrimenko I, Popov P, Hu H, Weierstall U, Liu W, Cho Y, Gushchin I, Rogachev A, Bourenkov G, Park S, Park G, Hyun HJ, Park J, Gordeliy V, Borshchevskiy V, Mishin A, Cherezov V

Nature communications, 2022

doi:10.1038/s41467-022-32447-1.

Mechanisms of membrane protein crystallization in 'bicelles'.

Murugova TN, Ivankov OI, Ryzhykau YL, Soloviov DV, Kovalev KV, Skachkova DV, Round A, Baeken C, Ishchenko AV, Volkov OA, Rogachev AV, Vlasov AV, Kuklin AI, Gordeliy VI

Scientific reports, 2022

doi:10.1038/s41598-022-13945-0.

True-atomic-resolution insights into the structure and functional role of linear chains and low-barrier hydrogen bonds in proteins.

Borshchevskiy V, Kovalev K, Round E, Efremov R, Astashkin R, Bourenkov G, Bratanov D, Balandin T, Chizhov I, Baeken C, Gushchin I, Kuzmin A, Alekseev A, Rogachev A, Willbold D, Engelhard M, Bamberg E, Büldt G, Gordeliy V

Nature structural & molecular biology, 2022

doi:10.1038/s41594-022-00762-2.

Engineering the catalytic properties of two-domain laccase from Streptomyces griseoflavus Ac-993.

Kolyadenko I, Scherbakova A, Kovalev K, Gabdulkhakov A, Tishchenko S

International journal of molecular sciences, 2021

doi:10.3390/ijms23010065.

The voltage dependent sidedness of the reprotonation of the retinal Schiff base determines the unique inward pumping of xenorhodopsin.

Weissbecker J, Boumrifak C, Breyer M, Wießalla T, Shevchenko V, Mager T, Slavov C, Alekseev A, Kovalev K, Gordeliy V, Bamberg E, Wachtveitl J

Angewandte Chemie (International ed. in English), 2021

doi:10.1002/anie.202103882.

Crystal structure of human 14-3-3ζ complexed with the noncanonical phosphopeptide from proapoptotic BAD.

Sluchanko NN, Tugaeva KV, Gushchin I, Remeeva A, Kovalev K, Cooley RB

Biochemical and biophysical research communications, 2021

doi:10.1016/j.bbrc.2021.10.053.

Structure-based insights into evolution of rhodopsins.

Zabelskii D, Dmitrieva N, Volkov O, Shevchenko V, Kovalev K, Balandin T, Soloviov D, Astashkin R, Zinovev E, Alekseev A, Round E, Polovinkin V, Chizhov I, Rogachev A, Okhrimenko I, Borshchevskiy V, Chupin V, Büldt G, Yutin N, Bamberg E, Koonin E, Gordeliy V

Communications biology, 2021

doi:10.1038/s42003-021-02326-4.