Self-organization of vascularized skeletal muscle from bovine embryonic stem cells.

Sanaki-Matsumiya M, Villava C, Rappez L, Haase K, Wu J, Ebisuya M

bioRxiv, 2024

doi:10.1101/2024.03.22.586252.

Increasing quantitation in spatial single-cell metabolomics by using fluorescence as ground truth.

Molenaar MR, Shahraz M, Delafiori J, Eisenbarth A, Ekelöf M, Rappez L, Alexandrov T

Frontiers in molecular biosciences, 2022

doi:10.3389/fmolb.2022.1021889.

SpaceM reveals metabolic states of single cells.

Rappez L, Stadler M, Triana S, Gathungu RM, Ovchinnikova K, Phapale P, Heikenwalder M, Alexandrov T

Nature methods, 2021

doi:10.1038/s41592-021-01198-0.

DeepCycle reconstructs a cyclic cell cycle trajectory from unsegmented cell images using convolutional neural networks.

Rappez L, Rakhlin A, Rigopoulos A, Nikolenko S, Alexandrov T

Molecular systems biology, 2020

doi:10.15252/msb.20209474.

PySpacell: a python package for spatial analysis of cell images.

Rose F, Rappez L, Triana SH, Alexandrov T, Genovesio A

2019

doi:10.1002/cyto.a.23955.

Spatial single-cell profiling of intracellular metabolomes in situ.

Rappez L, Stadler M, Triana S, Phapale P, Heikenwalder M, Alexandrov T

biorxiv, 2019

doi:10.1101/510222.

3D molecular cartography using LC-MS facilitated by Optimus and 'ili software.

Protsyuk I, Melnik AV, Nothias LF, Rappez L, Phapale P, Aksenov AA, Bouslimani A, Ryazanov S, Dorrestein PC, Alexandrov T

Nature protocols, 2017

doi:10.1038/nprot.2017.122.

CtrA controls cell division and outer membrane composition of the pathogen Brucella abortus.

Francis N, Poncin K, Fioravanti A, Vassen V, Willemart K, Ong TA, Rappez L, Letesson JJ, Biondi EG, De Bolle X

Molecular microbiology, 2017

doi:10.1111/mmi.13589.