HiFi metagenomic sequencing enables assembly of accurate and complete genomes from human gut microbiota.

Kim CY, Ma J, Lee I

Nature communications, 2022

doi:10.1038/s41467-022-34149-0.

HumanNet v3: an improved database of human gene networks for disease research.

Kim CY, Baek S, Cha J, Yang S, Kim E, Marcotte EM, Hart T, Lee I

Nucleic Acids Research, 2022

doi:10.1093/nar/gkab1048.

Human reference gut microbiome catalog including newly assembled genomes from under-represented Asian metagenomes.

Kim CY, Lee M, Yang S, Kim K, Yong D, Kim HR, Lee I

Genome Medicine, 2021

doi:10.1186/s13073-021-00950-7.

Network integrative genomic and transcriptomic analysis of carbapenem-resistant Klebsiella pneumoniae strains identifies genes for antibiotic resistance and virulence.

Lee M, Pinto NA, Kim CY, Yang S, D'Souza R, Yong D, Lee I

mSystems , 2019

doi:10.1128/mSystems.00202-19.

HumanNet v2: human gene networks for disease research.

Hwang S, Kim CY, Yang S, Kim E, Hart T, Marcotte EM, Lee I

Nucleic Acids Research, 2019

doi:10.1093/nar/gky1126.

Network-based genetic investigation of virulence-associated phenotypes in methicillin-resistant Staphylococcus aureus.

Kim CY, Lee M, Lee K, Yoon SS, Lee I

Scientific Reports, 2018

doi:10.1038/s41598-018-29120-3.

TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions.

Han H, Cho JW, Lee S, Yun A, Kim H, Bae D, Yang S, Kim CY, Lee M, Kim E, Lee S, Kang B, Jeong D, Kim Y, Jeon HN, Jung H, Nam S, Chung M, Kim JH, Lee I

Nucleic Acids Research, 2018

doi:10.1093/nar/gkx1013.

GWAB: a web server for the network-based boosting of human genome-wide association data.

Shim JE, Bang C, Yang S, Lee T, Hwang S, Kim CY, Singh-Blom UM, Marcotte EM, Lee I

Nucleic Acids Research, 2017

doi:10.1093/nar/gkx284.

COEXPEDIA: exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH).

Yang S, Kim CY, Hwang S, Kim E, Kim H, Shim H, Lee I

Nucleic Acids Research, 2017

doi:10.1093/nar/gkw868.

Function-driven discovery of disease genes in zebrafish using an integrated genomics big data resource.

Shim H, Kim JH, Kim CY, Hwang S, Kim H, Yang S, Lee JE, Lee I

Nucleic Acids Research, 2016

doi:10.1093/nar/gkw897.