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Cell Rep,
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Cell Syst,
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Nature,
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Fleming SJ, Chaffin MD, Chaffin MD, Arduini A, Akkad A, Banks E, Marioni JC, Philippakis AA, Ellinor PT, Babadi M.
2019
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Saraiva LR, Riveros-McKay F, Mezzavilla M, Abou-Moussa EH, Arayata CJ, Makhlouf M, Trimmer C, Ibarra-Soria X, Khan M, Van Gerven L, Jorissen M, Gibbs M, O'Flynn C, McGrane S, Mombaerts P, Marioni JC, Mainland JD, Logan DW.
Sci Adv,
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Haim-Vilmovsky L, Henriksson J, Walker JA, Miao Z, Natan E, Kar G, Clare S, Barlow JL, Charidemou E, Mamanova L, Chen X, Proserpio V, Pramanik J, Woodhouse S, Protasio AV, Efremova M, Griffin JL, Berriman M, Dougan G, Fisher J, Marioni JC, McKenzie AN, Teichmann SA.
2019
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Stojic L, Lun ATL, Mascalchi P, Ernst C, Redmond AM, Mangei J, Barr AR, Bousgouni V, Bakal C, Marioni JC, Odom DT, Gergely F.
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Chen HC, Eling N, Martinez-Jimenez CP, O'Brien LM, Carbonaro V, Marioni JC, Odom DT, de la Roche M.
EMBO Rep,
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Eling N, Morgan MD, Marioni JC.
Nat Rev Genet,
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Eling N, Morgan MD, Marioni JC.
Nat Rev Genet,
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Aztekin C, Hiscock TW, Marioni JC, Gurdon JB, Simons BD, Jullien J.
Science,
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Cuomo AS, Seaton DD, McCarthy DJ, Martinez I, Bonder MJ, Garcia-Bernardo J, Amatya S, Madrigal P, Isaacson A, Buettner F, Knights A, Natarajan KN, Vallier L, Marioni JC, Chhatriwala M, Stegle O, HipSci Consortium.
2019
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Lun ATL, Riesenfeld S, Andrews T, Dao TP, Gomes T, participants in the 1st Human Cell Atlas Jamboree, Marioni JC.
Genome Biol,
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Ernst C, Eling N, Martinez-Jimenez CP, Marioni JC, Odom DT.
Nat Commun,
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Pijuan-Sala B, Griffiths JA, Guibentif C, Hiscock TW, Jawaid W, Calero-Nieto FJ, Mulas C, Ibarra-Soria X, Tyser RCV, Ho DLL, Reik W, Srinivas S, Simons BD, Nichols J, Marioni JC, Göttgens B.
Nature,
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Messmer T, von Meyenn F, Savino A, Santos F, Mohammed H, Lun ATL, Marioni JC, Reik W.
Cell Rep,
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Nat Commun,
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Chen H, Eling N, Martinez-Jimenez CP, O’Brien LM, Marioni JC, Odom DT, la Roche Md.
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Laumer CE, Gruber-Vodicka H, Hadfield MG, Pearse VB, Riesgo A, Marioni JC, Giribet G.
Elife,
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Ziv O, Gabryelska MM, Lun ATL, Gebert LFR, Sheu-Gruttadauria J, Meredith LW, Liu ZY, Kwok CK, Qin CF, MacRae IJ, Goodfellow I, Marioni JC, Kudla G, Miska EA.
Nat Methods,
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Eling N, Richard AC, Richardson S, Marioni JC, Vallejos CA.
Cell Syst,
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Aitken SJ, Ibarra-Soria X, Kentepozidou E, Flicek P, Feig C, Marioni JC, Odom DT.
Genome Biol,
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Richard AC, Lun ATL, Lau WWY, Göttgens B, Marioni JC, Griffiths GM.
Nat Immunol,
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Griffiths JA, Richard AC, Bach K, Lun ATL, Marioni JC.
Nat Commun,
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Lun ATL, Riesenfeld S, Andrews T, Gomes T, Marioni JC, The Phuong Dao, participants in the 1st Human Cell Atlas Jamboree.
2018
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Ernst C, Eling N, Martinez-Jimenez CP, Marioni JC, Odom DT.
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Morgan MD, Marioni JC.
Genome Biol,
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Do DV, Strauss B, Cukuroglu E, Macaulay I, Wee KB, Hu TX, Igor RLM, Lee C, Harrison A, Butler R, Dietmann S, Jernej U, Marioni J, Smith CWJ, Göke J, Surani MA.
Cell Discov,
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Argelaguet R, Velten B, Arnol D, Dietrich S, Zenz T, Marioni JC, Buettner F, Huber W, Stegle O.
Mol Syst Biol,
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Stojic L, Lun ATL, Mangei J, Mascalchi P, Quarantotti V, Barr AR, Bakal C, Marioni JC, Gergely F, Odom DT.
Nucleic Acids Res,
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Mol Syst Biol,
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Haghverdi L, Lun ATL, Morgan MD, Marioni JC.
Nat Biotechnol,
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Clark SJ, Argelaguet R, Kapourani CA, Stubbs TM, Lee HJ, Alda-Catalinas C, Krueger F, Sanguinetti G, Kelsey G, Marioni JC, Stegle O, Reik W.
Nat Commun,
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Achim K, Eling N, Vergara HM, Bertucci PY, Musser J, Vopalensky P, Brunet T, Collier P, Benes V, Marioni JC, Arendt D.
Mol Biol Evol,
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Ibarra-Soria X, Jawaid W, Pijuan-Sala B, Ladopoulos V, Scialdone A, Jörg DJ, Tyser RCV, Calero-Nieto FJ, Mulas C, Nichols J, Vallier L, Srinivas S, Simons BD, Göttgens B, Marioni JC.
Nat Cell Biol,
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Bach K, Pensa S, Grzelak M, Hadfield J, Adams DJ, Marioni JC, Khaled WT.
Nat Commun,
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Elife,
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Shahbazi MN, Scialdone A, Skorupska N, Weberling A, Recher G, Zhu M, Jedrusik A, Devito LG, Noli L, Macaulay IC, Buecker C, Khalaf Y, Ilic D, Voet T, Marioni JC, Zernicka-Goetz M.
Nature,
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Griffiths JA, Scialdone A, Marioni JC.
BMC Genomics,
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Welby E, Lakowski J, Di Foggia V, Budinger D, Gonzalez-Cordero A, Lun ATL, Epstein M, Patel A, Cuevas E, Kruczek K, Naeem A, Minneci F, Hubank M, Jones DT, Marioni JC, Ali RR, Sowden JC.
Stem Cell Reports,
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Buettner F, Pratanwanich N, McCarthy DJ, Marioni JC, Stegle O.
Genome Biol,
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Wong ES, Schmitt BM, Kazachenka A, Thybert D, Redmond A, Connor F, Rayner TF, Feig C, Ferguson-Smith AC, Marioni JC, Odom DT, Flicek P.
Nat Commun,
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Lun ATL, Calero-Nieto FJ, Haim-Vilmovsky L, Göttgens B, Marioni JC.
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Marioni JC, Arendt D.
Annu Rev Cell Dev Biol,
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Achim K, Eling N, Martinez Vergara H, Bertucci PY, Brunet T, Collier P, Benes V, Marioni JC, Arendt D.
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Haghverdi L, Lun ATL, Morgan MD, Marioni JC.
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Liu Y, Gonzàlez-Porta M, Santos S, Brazma A, Marioni JC, Aebersold R, Venkitaraman AR, Wickramasinghe VO.
Cell Rep,
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Mohammed H, Hernando-Herraez I, Savino A, Scialdone A, Macaulay I, Mulas C, Chandra T, Voet T, Dean W, Nichols J, Marioni JC, Reik W.
Cell Rep,
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Nat Methods,
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2017
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Martinez-Jimenez CP, Eling N, Chen HC, Vallejos CA, Kolodziejczyk AA, Connor F, Stojic L, Rayner TF, Stubbington MJT, Teichmann SA, de la Roche M, Marioni JC, Odom DT.
Science,
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Lun ATL, Marioni JC.
Biostatistics,
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Huang Y, Kim JK, Do DV, Lee C, Penfold CA, Zylicz JJ, Marioni JC, Hackett JA, Surani MA.
Elife,
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Lun ATL, Marioni JC.
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Lun AT, McCarthy DJ, Marioni JC.
F1000Res,
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Scialdone A, Tanaka Y, Jawaid W, Moignard V, Wilson NK, Macaulay IC, Marioni JC, Göttgens B.
Nature,
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Touloumis A, Marioni JC, Tavaré S.
Bioinformatics,
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Howe K, Schiffer PH, Zielinski J, Wiehe T, Laird GK, Marioni JC, Soylemez O, Kondrashov F, Leptin M.
Open Biol,
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Rudolph KL, Schmitt BM, Villar D, White RJ, Marioni JC, Kutter C, Odom DT.
PLoS Genet,
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Lun AT, Bach K, Marioni JC.
Genome Biol,
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Vallejos CA, Richardson S, Marioni JC.
Genome Biol,
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Goolam M, Scialdone A, Graham SJL, Macaulay IC, Jedrusik A, Hupalowska A, Voet T, Marioni JC, Zernicka-Goetz M.
Cell,
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Ilicic T, Kim JK, Kolodziejczyk AA, Bagger FO, McCarthy DJ, Marioni JC, Teichmann SA.
Genome Biol,
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Kim JK, Kolodziejczyk AA, Ilicic T, Teichmann SA, Marioni JC.
Nat Commun,
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Howe K, Schiffer PH, Zielinski J, Wiehe T, Laird GK, Marioni J, Soylemez O, Kondrashov F, Leptin M.
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Saraiva LR, Ibarra-Soria X, Khan M, Omura M, Scialdone A, Mombaerts P, Marioni JC, Logan DW.
Sci Rep,
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Kim JK, Kolodziejczyk AA, Ilicic T, Teichmann SA, Marioni JC.
Nat Commun,
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Kolodziejczyk AA, Kim JK, Tsang JC, Ilicic T, Henriksson J, Natarajan KN, Tuck AC, Gao X, Bühler M, Liu P, Marioni JC, Teichmann SA.
Cell Stem Cell,
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Wickramasinghe VO, Gonzàlez-Porta M, Perera D, Bartolozzi AR, Sibley CR, Hallegger M, Ule J, Marioni JC, Venkitaraman AR.
Genome Biol,
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Leigh-Brown S, Goncalves A, Thybert D, Stefflova K, Watt S, Flicek P, Brazma A, Marioni JC, Odom DT.
PLoS One,
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Scialdone A, Natarajan KN, Saraiva LR, Proserpio V, Teichmann SA, Stegle O, Marioni JC, Buettner F.
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Saraiva LR, Ahuja G, Ivandic I, Syed AS, Marioni JC, Korsching SI, Logan DW.
Sci Rep,
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Vallejos CA, Marioni JC, Richardson S.
PLoS Comput Biol,
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Kolodziejczyk AA, Kim JK, Svensson V, Marioni JC, Teichmann SA.
Mol Cell,
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Achim K, Pettit JB, Saraiva LR, Gavriouchkina D, Larsson T, Arendt D, Marioni JC.
Nat Biotechnol,
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Stegle O, Teichmann SA, Marioni JC.
Nat Rev Genet,
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Touloumis A, Tavaré S, Marioni JC.
Biometrics,
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Buettner F, Natarajan KN, Casale FP, Proserpio V, Scialdone A, Theis FJ, Teichmann SA, Marioni JC, Stegle O.
Nat Biotechnol,
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Piccirillo SG, Spiteri I, Sottoriva A, Touloumis A, Ber S, Price SJ, Heywood R, Francis NJ, Howarth KD, Collins VP, Venkitaraman AR, Curtis C, Marioni JC, Tavaré S, Watts C.
Cancer Res,
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Peat JR, Dean W, Clark SJ, Krueger F, Smallwood SA, Ficz G, Kim JK, Marioni JC, Hore TA, Reik W.
Cell Rep,
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Scialdone A, Achim K, Marioni JC.
Genome Biol,
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Ballester B, Medina-Rivera A, Schmidt D, Gonzàlez-Porta M, Carlucci M, Chen X, Chessman K, Faure AJ, Funnell AP, Goncalves A, Kutter C, Lukk M, Menon S, McLaren WM, Stefflova K, Watt S, Weirauch MT, Crossley M, Marioni JC, Odom DT, Flicek P, Wilson MD.
Elife,
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Fonseca NA, Marioni J, Brazma A.
PLoS One,
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Pettit JB, Tomer R, Achim K, Richardson S, Azizi L, Marioni J.
PLoS Comput Biol,
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Schmitt BM, Rudolph KL, Karagianni P, Fonseca NA, White RJ, Talianidis I, Odom DT, Marioni JC, Kutter C.
Genome Res,
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Nat Genet,
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Eckersley-Maslin MA, Thybert D, Bergmann JH, Marioni JC, Flicek P, Spector DL.
Dev Cell,
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Petryszak R, Burdett T, Fiorelli B, Fonseca NA, Gonzalez-Porta M, Hastings E, Huber W, Jupp S, Keays M, Kryvych N, McMurry J, Marioni JC, Malone J, Megy K, Rustici G, Tang AY, Taubert J, Williams E, Mannion O, Parkinson HE, Brazma A.
Nucleic Acids Res,
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Brennecke P, Anders S, Kim JK, Kołodziejczyk AA, Zhang X, Proserpio V, Baying B, Benes V, Teichmann SA, Marioni JC, Heisler MG.
Nat Methods,
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Stefflova K, Thybert D, Wilson MD, Streeter I, Aleksic J, Karagianni P, Brazma A, Adams DJ, Talianidis I, Marioni JC, Flicek P, Odom DT.
Cell,
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Whitaker HC, Patel D, Howat WJ, Warren AY, Kay JD, Sangan T, Marioni JC, Mitchell J, Aldridge S, Luxton HJ, Massie C, Lynch AG, Neal DE.
Br J Cancer,
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Pettit JB, Marioni JC.
BMC Bioinformatics,
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Sottoriva A, Spiteri I, Piccirillo SG, Touloumis A, Collins VP, Marioni JC, Curtis C, Watts C, Tavaré S.
Proc Natl Acad Sci U S A,
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Kim JK, Marioni JC.
Genome Biol,
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Fonseca NA, Rung J, Brazma A, Marioni JC.
Bioinformatics,
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Goncalves A, Leigh-Brown S, Thybert D, Stefflova K, Turro E, Flicek P, Brazma A, Odom DT, Marioni JC.
Genome Res,
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Barreiro LB, Tailleux L, Pai AA, Gicquel B, Marioni JC, Gilad Y.
Proc Natl Acad Sci U S A,
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Genome Res,
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Danecek P, Auton A, Abecasis G, Albers CA, Banks E, DePristo MA, Handsaker RE, Lunter G, Marth GT, Sherry ST, McVean G, Durbin R, 1000 Genomes Project Analysis Group.
Bioinformatics,
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Goh XY, Rees JR, Paterson AL, Chin SF, Marioni JC, Save V, O'Donovan M, Eijk PP, Alderson D, Ylstra B, Caldas C, Fitzgerald RC.
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Pai AA, Bell JT, Marioni JC, Pritchard JK, Gilad Y.
PLoS Genet,
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Cain CE, Blekhman R, Marioni JC, Gilad Y.
Genetics,
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PLoS Genet,
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Mol Ecol,
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Pickrell JK, Marioni JC, Pai AA, Degner JF, Engelhardt BE, Nkadori E, Veyrieras JB, Stephens M, Gilad Y, Pritchard JK.
Nature,
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Genome Res,
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Curtis C, Lynch AG, Dunning MJ, Spiteri I, Marioni JC, Hadfield J, Chin SF, Brenton JD, Tavaré S, Caldas C.
BMC Genomics,
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Degner JF, Marioni JC, Pai AA, Pickrell JK, Nkadori E, Gilad Y, Pritchard JK.
Bioinformatics,
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Marioni JC, White M, Tavaré S, Lynch AG.
Proc Natl Acad Sci U S A,
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