Enrichment analysis for spatial and single-cell metabolomics accounting for molecular ambiguity.

Wadie B, Molenaar MR, Vieira LM, Alexandrov T

Bioinformatics Advances, 2025

doi:10.1093/bioadv/vbaf100.

HT SpaceM: A high-throughput and reproducible method for small-molecule single-cell metabolomics.

Delafiori J, Shahraz M, Eisenbarth A, Hilsenstein V, Drotleff B, Bailoni A, Wadie B, Ekelöf M, Mattausch A, Alexandrov T

bioRxiv, 2024

doi:10.1101/2024.10.24.620114.

METASPACE-ML: Context-specific metabolite annotation for imaging mass spectrometry using machine learning.

Wadie B, Stuart L, Rath CM, Drotleff B, Mamedov S, Alexandrov T

Nature communications, 2024

doi:10.1038/s41467-024-52213-9.

Enhancing metabolite coverage in MALDI-MSI using laser post-ionisation (MALDI-2).

McKinnon JC, Milioli HH, Purcell CA, Chaffer CL, Wadie B, Alexandrov T, Mitchell TW, Ellis SR

Analytical methods : advancing methods and applications, 2023

doi:10.1039/d3ay01046e.

Use of viral motif mimicry improves the proteome-wide discovery of human linear motifs.

Wadie B, Kleshchevnikov V, Sandaltzopoulou E, Benz C, Petsalaki E

Cell reports, 2022

doi:10.1016/j.celrep.2022.110764.

Transcriptional profiling of early and late phases of bovine tuberculosis.

Abdelaal HFM, Thacker TC, Wadie B, Palmer MV, Talaat AM

Infection and immunity, 2021

doi:10.1128/IAI.00313-21.