APOBEC2 safeguards skeletal muscle cell fate through binding chromatin and regulating transcription of non-muscle genes during myoblast differentiation.

Lorenzo JP, Molla L, Amro EM, Ibarra IL, Ruf S, Neber C, Gkougkousis C, Ridani J, Subramani PG, Boulais J, Harjanto D, Vonica A, Di Noia JM, Dieterich C, Zaugg JB, Papavasiliou FN

Proceedings of the National Academy of Sciences of the United States of America, 2024

doi:10.1073/pnas.2312330121.

Escape from X inactivation is directly modulated by levels of Xist non-coding RNA.

Hauth A, Panten J, Kneuss E, Picard C, Servant N, Rall I, Pérez-Rico YA, Clerquin L, Servaas N, Villacorta L, Jung F, Luong C, Chang HY, Zaugg JB, Stegle O, Odom DT, Loda A, Heard E

bioRxiv, 2024

doi:10.1101/2024.02.22.581559.

Cytotoxic CD8+ Temra cells show loss of chromatin accessibility at genes associated with T cell activation.

Türk L, Filippov I, Arnold C, Zaugg J, Tserel L, Kisand K, Peterson P

Frontiers in immunology, 2024

doi:10.3389/fimmu.2024.1285798.

The remission status of AML patients post alloSCT is associated with a distinct single-cell bone marrow T cell signature.

Mathioudaki A, Wang X, Sedloev DN, Huth R, Kamal A, Hundemer M, Liu Y, Vasileiou S, Lulla PD, Müller-Tidow C, Dreger P, Luft T, Sauer T, Schmitt M, Zaugg JB, Pabst C

Blood, 2024

doi:10.1182/blood.2023021815.

Scalable ultra-high-throughput single-cell chromatin and RNA sequencing reveals gene regulatory dynamics linking macrophage polarization to autoimmune disease.

Lobato-Moreno S, Yildiz U, Claringbould A, Servaas NH, Vlachou EP, Arnold C, Bauersachs HG, Campos-Fornés V, Prummel KD, Noh KM, Marttinen M, Zaugg JB

bioRxiv, 2024

doi:10.1101/2023.12.26.573253.

A single-cell multi-omic and spatial atlas of B cell lymphomas reveals differentiation drives intratumor heterogeneity.

Fitzgerald D, Roider T, Baertsch M, Kibler A, Horlova A, Chung E, Vöhringer H, Mathioudaki A, Budeus B, Passerini V, Knoll M, Mammen J, Li L, Caillé L, Czernilofsky F, Bruch P, Liebers N, Meyer-Bender M, Weigert O, Zaugg J, Nolan G, Seifert M, Dietrich S, Huber W

bioRxiv, 2023

doi:10.1101/2023.11.06.565756.

Transcriptional profiling unveils molecular subgroups of adaptive and maladaptive right ventricular remodeling in pulmonary hypertension.

Khassafi F, Chelladurai P, Valasarajan C, Nayakanti SR, Martineau S, Sommer N, Yokokawa T, Boucherat O, Kamal A, Kiely DG, Swift AJ, Alabed S, Omura J, Breuils-Bonnet S, Kuenne C, Potus F, Günther S, Savai R, Seeger W, Looso L, Lawrie A, Zaugg JB, Tello K, Provencher S, Bonnet S, Pullamsetti SS

Nature cardiovascular research, 2023

doi:10.1038/s44161-023-00338-3.

GRaNIE and GRaNPA: inference and evaluation of enhancer-mediated gene regulatory networks.

Kamal A, Arnold C, Claringbould A, Moussa R, Servaas NH, Kholmatov M, Daga N, Nogina D, Mueller-Dott S, Reyes-Palomares A, Palla G, Sigalova O, Bunina D, Pabst C, Zaugg JB

Molecular systems biology, 2023

doi:10.15252/msb.202311627.

MYT1L haploinsufficiency in human neurons and mice causes autism-associated phenotypes that can be reversed by genetic and pharmacologic intervention.

Weigel B, Tegethoff JF, Grieder SD, Lim B, Nagarajan B, Liu YC, Truberg J, Papageorgiou D, Adrian-Segarra JM, Schmidt LK, Kaspar J, Poisel E, Heinzelmann E, Saraswat M, Christ M, Arnold C, Ibarra IL, Campos J, Krijgsveld J, Monyer H, Zaugg JB, Acuna C, Mall M

Molecular psychiatry, 2023

doi:10.1038/s41380-023-01959-7.

Convolutional networks for supervised mining of molecular patterns within cellular context.

de Teresa-Trueba I, Goetz SK, Mattausch A, Stojanovska F, Zimmerli CE, Toro-Nahuelpan M, Cheng DWC, Tollervey F, Pape C, Beck M, Diz-Muñoz A, Kreshuk A, Mahamid J, Zaugg JB

Nature methods, 2023

doi:10.1038/s41592-022-01746-2.

Current challenges in understanding the role of enhancers in disease.

Zaugg JB, Sahlén P, Andersson R, Alberich-Jorda M, de Laat W, Deplancke B, Ferrer J, Mandrup S, Natoli G, Plewczynski D, Rada-Iglesias A, Spicuglia S

Nature structural & molecular biology, 2022

doi:10.1038/s41594-022-00896-3.

Identifying a novel role for the master regulator Tal1 in the Endothelial to Hematopoietic Transition.

Serina Secanechia YN, Bergiers I, Rogon M, Arnold C, Descostes N, Le S, López-Anguita N, Ganter K, Kapsali C, Bouilleau L, Gut A, Uzuotaite A, Aliyeva A, Zaugg JB, Lancrin C

Scientific reports, 2022

doi:10.1038/s41598-022-20906-0.

Operation of a TCA cycle subnetwork in the mammalian nucleus.

Kafkia E, Andres-Pons A, Ganter K, Seiler M, Smith TS, Andrejeva A, Jouhten P, Pereira F, Franco C, Kuroshchenkova A, Leone S, Sawarkar R, Boston R, Thaventhiran J, Zaugg JB, Lilley KS, Lancrin C, Beck M, Patil KR

Science advances, 2022

doi:10.1126/sciadv.abq5206.

Drug-microenvironment perturbations reveal resistance mechanisms and prognostic subgroups in CLL.

Bruch PM, Giles HA, Kolb C, Herbst SA, Becirovic T, Roider T, Lu J, Scheinost S, Wagner L, Huellein J, Berest I, Kriegsmann M, Kriegsmann K, Zgorzelski C, Dreger P, Zaugg JB, Müller-Tidow C, Zenz T, Huber W, Dietrich S

Molecular systems biology, 2022

doi:10.15252/msb.202110855.

Comparative chromatin accessibility upon BDNF stimulation delineates neuronal regulatory elements.

Ibarra IL, Ratnu VS, Gordillo L, Hwang IY, Mariani L, Weinand K, Hammarén HM, Heck J, Bulyk ML, Savitski MM, Zaugg JB, Noh KM

Molecular systems biology, 2022

doi:10.15252/msb.202110473.

Glucose metabolism and aging of hematopoietic stem and progenitor cells.

Poisa-Beiro L, Landry JJM, Raffel S, Tanaka M, Zaugg J, Gavin AC, Ho AD

International journal of molecular sciences, 2022

doi:10.3390/ijms23063028.

CDK7/12/13 inhibition targets an oscillating leukemia stem cell network and synergizes with venetoclax in acute myeloid leukemia.

He L, Arnold C, Thoma J, Rohde C, Kholmatov M, Garg S, Hsiao CC, Viol L, Zhang K, Sun R, Schmidt C, Janssen M, MacRae T, Huber K, Thiede C, Hébert J, Sauvageau G, Spratte J, Fluhr H, Aust G, Müller-Tidow C, Niehrs C, Pereira G, Hamann J, Tanaka M, Zaugg JB, Pabst C

EMBO molecular medicine, 2022

doi:10.15252/emmm.202114990.

Genome-wide quantification of transcription factor binding at single-DNA-molecule resolution using methyl-transferase footprinting.

Kleinendorst RWD, Barzaghi G, Smith ML, Zaugg JB, Krebs AR

Nature protocols, 2021

doi:10.1038/s41596-021-00630-1.

Enhancers in disease: molecular basis and emerging treatment strategies.

Claringbould A, Zaugg JB

Trends in molecular medicine, 2021

doi:10.1016/j.molmed.2021.07.012.

Transcription factors: bridge between cell signaling and gene regulation.

Weidemüller P, Kholmatov M, Petsalaki E, Zaugg JB

Proteomics, 2021

doi:10.1002/pmic.202000034.

Hotspot DNMT3A mutations in clonal hematopoiesis and acute myeloid leukemia sensitize cells to azacytidine via viral mimicry response.

Scheller M, Ludwig AK, Göllner S, Rohde C, Krämer S, Stäble S, Janssen M, Müller JA, He L, Bäumer N, Arnold C, Gerß J, Schönung M, Thiede C, Niederwieser C, Niederwieser D, Serve H, Berdel WE, Thiem U, Hemmerling I, Leuschner F, Plass C, Schlesner M, Zaugg J, Milsom MD, Trumpp A, Pabst C, Lipka DB, Müller-Tidow C

Nature cancer, 2021

doi:10.1038/s43018-021-00213-9.

Plasmodium falciparum malaria drives epigenetic reprogramming of human monocytes toward a regulatory phenotype.

Guha R, Mathioudaki A, Doumbo S, Doumtabe D, Skinner J, Arora G, Siddiqui S, Li S, Kayentao K, Ongoiba A, Zaugg J, Traore B, Crompton PD

PLoS pathogens, 2021

doi:10.1371/journal.ppat.1009430.

Donor cell memory confers a metastable state of directly converted cells.

Kim KP, Li C, Bunina D, Jeong HW, Ghelman J, Yoon J, Shin B, Park H, Han DW, Zaugg JB, Kim J, Kuhlmann T, Adams RH, Noh KM, Goldman SA, Schöler HR

Cell stem cell, 2021

doi:10.1016/j.stem.2021.02.023.

Integrative single-cell RNA-Seq and ATAC-Seq analysis of human developmental hematopoiesis.

Ranzoni AM, Tangherloni A, Berest I, Riva SG, Myers B, Strzelecka PM, Xu J, Panada E, Mohorianu I, Zaugg JB, Cvejic A

Cell stem cell, 2020

doi:10.1016/j.stem.2020.11.015.

Predictive features of gene expression variation reveal mechanistic link with differential expression.

Sigalova OM, Shaeiri A, Forneris M, Furlong EE, Zaugg JB

Molecular systems biology, 2020

doi:10.15252/msb.20209539.

Landscape of cohesin-mediated chromatin loops in the human genome.

Grubert F, Srivas R, Spacek DV, Kasowski M, Ruiz-Velasco M, Sinnott-Armstrong N, Greenside P, Narasimha A, Liu Q, Geller B, Sanghi A, Kulik M, Sa S, Rabinovitch M, Kundaje A, Dalton S, Zaugg JB, Snyder M

Nature, 2020

doi:10.1038/s41586-020-2151-x.

Genomic rewiring of SOX2 chromatin interaction network during differentiation of ESCs to postmitotic neurons.

Bunina D, Abazova N, Diaz N, Noh KM, Krijgsveld J, Zaugg JB

Cell systems, 2020

doi:10.1016/j.cels.2020.05.003.

Remodeling of active endothelial enhancers is associated with aberrant gene-regulatory networks in pulmonary arterial hypertension.

Reyes-Palomares A, Gu M, Grubert F, Berest I, Sa S, Kasowski M, Arnold C, Shuai M, Srivas R, Miao S, Li D, Snyder MP, Rabinovitch M, Zaugg JB

Nature communications, 2020

doi:10.1038/s41467-020-15463-x.

Lysine 4 of histone H3.3 is required for embryonic stem cell differentiation, histone enrichment at regulatory regions and transcription accuracy.

Gehre M, Bunina D, Sidoli S, Lübke MJ, Diaz N, Trovato M, Garcia BA, Zaugg JB, Noh KM

Nature genetics, 2020

doi:10.1038/s41588-020-0586-5.

Mechanistic insights into transcription factor cooperativity and its impact on protein-phenotype interactions.

Ibarra IL, Hollmann NM, Klaus B, Augsten S, Velten B, Hennig J, Zaugg JB

Nature communications, 2020

doi:10.1038/s41467-019-13888-7.

Quantification of differential transcription factor activity and multiomics-based classification into activators and repressors: diffTF.

Berest I, Arnold C, Reyes-Palomares A, Palla G, Rasmussen KD, Giles H, Bruch PM, Huber W, Dietrich S, Helin K, Zaugg JB

Cell reports, 2019

doi:10.1016/j.celrep.2019.10.106.

Hepatic leukemia factor is a novel leukemic stem cell regulator in DNMT3A, NPM1, and FLT3-ITD triple-mutated AML.

Garg S, Reyes-Palomares A, He L, Bergeron A, Lavallée VP, Lemieux S, Gendron P, Rohde C, Xia J, Jagdhane P, Müller-Tidow C, Lipka DB, Imren S, Humphries RK, Waskow C, Jeremias I, Vick B, Hébert J, Richard-Carpentier G, Sauvageau G, Zaugg J, Barabé F, Pabst C

Blood, 2019

doi:10.1182/blood.2018862383.

TET2 binding to enhancers facilitates transcription factor recruitment in hematopoietic cells.

Rasmussen KD, Berest I, Keβler S, Nishimura K, Simón-Carrasco L, Vassiliou GS, Pedersen MT, Christensen J, Zaugg JB, Helin K

Genome research, 2019

doi:10.1101/gr.239277.118.

Cell-specific proteome analyses of human bone marrow reveal molecular features of age-dependent functional decline.

Hennrich ML, Romanov N, Horn P, Jaeger S, Eckstein V, Steeples V, Ye F, Ding X, Poisa-Beiro L, Lai MC, Lang B, Boultwood J, Luft T, Zaugg JB, Pellagatti A, Aloy P, Bork P, Gavin AC, Ho AD

Nature communications, 2018

doi:10.1038/s41467-018-06353-4.

Structure meets function: How chromatin organisation conveys functionality.

Ruiz-Velasco M, Zaugg J

2017

doi:10.1016/j.coisb.2017.01.003.

CTCF-Mediated Chromatin Loops between Promoter and Gene Body Regulate Alternative Splicing across Individuals.

Ruiz-Velasco M, Kumar M, Lai MC, Bhat P, Solis-Pinson AB, Reyes A, Kleinsorg S, Noh KM, Gibson TJ, Zaugg JB

Cell systems, 2017

doi:10.1016/j.cels.2017.10.018.

Co-expression networks reveal the tissue-specific regulation of transcription and splicing.

Saha A, Kim Y, Gewirtz ADH, Jo B, Gao C, McDowell IC, McDowell IC, Engelhardt BE, Battle A

Genome research, 2017

doi:10.1101/gr.216721.116.

Identifying cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysis

Yang F, Wang JB, Pierce BL, Chen LS

GENOME RESEARCH, 2017

doi:10.1101/gr.216754.116.

Haplotype-specific MAPT exon 3 expression regulated by common intronic polymorphisms associated with Parkinsonian disorders.

Lai MC, Bechy AL, Denk F, Collins E, Gavriliouk M, Zaugg JB, Ryan BJ, Wade-Martins R, Caffrey TM

Molecular neurodegeneration, 2017

doi:10.1186/s13024-017-0224-6.

Genetic effects on gene expression across human tissues

Aguet F, Brown AA, Castel SE, Davis JR, He Y, Jo B, Mohammadi P, Park Y, Parsana P, Segre AV, Strober BJ, Zappala Z, Cummings BB, Gelfand ET, Hadley K, Huang KH, Lek M, Li X, Nedzel JL, Nguyen DY, Noble MS, Sullivan TJ, Tukiainen T, MacArthur DG, Getz G, Management NP, Addington A, Guan P, Koester S, Little AR, Lockhart NC, Moore HM, Rao A, Struewing JP, Volpi S, Collection B, Brigham LE, Hasz R, Hunter M, Johns C, Johnson M, Kopen G, Leinweber WF, Lonsdale JT, McDonald A, Mestichelli B, Myer K, Roe B, Salvatore M, Shad S, Thomas JA, Walters G, Washington M, Wheeler J, Bridge J, Foster BA, Gillard BM, Karasik E, Kumar R, Miklos M, Moser MT, Jewell SD, Montroy RG, Rohrer DC, Valley D, Mash DC, Davis DA, Sobin L, Barcus ME, Branton PA, Grp EMW, Abell NS, Balliu B, Delaneau O, Fresard L, Gamazon ER, Garrido-Martin D, Gewirtz ADH, Gliner G, Gloudemans MJ, Han B, He AZ, Hormozdiari F, Li X, Liu B, Kang EY, McDowell IC, Ongen H, Palowitch JJ, Peterson CB, Quon G, Ripke S, Saha A, Shabalin AA, Shimko TC, Sul JH, Teran NA, Tsang EK, Zhang H, Zhou YH, Bustamante CD, Cox NJ, Guigo R, Kellis M, McCarthy MI, Conrad DF, Eskin E, Li G, Nobel AB, Sabatti C, Stranger BE, Wen X, Wright FA, Ardlie KG, Dermitzakis ET, Lappalainen T, Battle A, Brown CD, Engelhardt BE, Montgomery SB, Aguet F, Ardlie KG, Cummings BB, Gelfand ET, Getz G, Hadley K, Handsaker RE, Huang KH, Kashin S, Karczewski KJ, Lek M, Li X, MacArthur DG, Nedzel JL, Nguyen DT, Noble MS, Segre AV, Trowbridge CA, Tukiainen T, Abell NS, Balliu B, Barshir R, Basha O, Battle A, Bogu GK, Brown A, Brown CD, Castel SE, Chen LS, Chiang C, Conrad DF, Cox NJ, Damani FN, Davis JR, Delaneau O, Dermitzakis ET, Engelhardt BE, Eskin E, Ferreira PG, Fresard L, Gamazon ER, Garrido-Martin D, Gewirtz ADH, Gliner G, Gloudemans MJ, Guigo R, Hall IM, Han B, He Y, Hormozdiari F, Howald C, Im HK, Jo B, Kang EY, Kim Y, Kim-Hellmuth S, Lappalainen T, Li G, Li X, Liu B, Mangul S, McCarthy MI, McDowell IC, Mohammadi P, Monlong J, Montgomery SB, Munoz-Aguirre M, Ndungu AW, Nicolae DL, Nobel AB, Oliva M, Ongen H, Palowitch JJ, Panousis N, Papasaikas P, Park Y, Parsana P, Payne AJ, Peterson CB, Quan J, Reverter F, Sabatti C, Saha A, Sammeth M, Scott AJ, Shabalin AA, Sodaei R, Stephens M, Stranger BE, Strober BJ, Sul JH, Tsang EK, Urbut S, De Bunt MV, Wang G, Wen X, Wright FA, Xi HS, Yeger-Lotem E, Zappala Z, Zaugg JB, Zhou YH, Akey JM, Bates D, Chan J, Chen LS, Claussnitzer M, Demanelis K, Diegel M, Doherty JA, Feinberg AP, Fernando MS, Halow J, Hansen KD, Haugen E, Hickey PF, Hou L, Jasmine F, Jian R, Jiang L, Johnson A, Kaul R, Kellis M, Kibriya MG, Lee K, Li JB, Li Q, Li X, Lin J, Lin S, Linder S, Linke C, Liu Y, Maurano MT, Molinie B, Montgomery SB, Nelson J, Neri FJ, Oliva M, Park Y, Pierce BL, Rinaldi NJ, Rizzardi LF, Sandstrom R, Skol A, Smith KS, Snyder MP, Stamatoyannopoulos J, Stranger BE, Tang H, Tsang EK, Wang L, Wang M, Van Wittenberghe N, Wu F, Zhang R, Fund NC, Nierras CR, Nci N, Branton PA, Carithers LJ, Guan P, Moore HM, Rao A, Vaught JB, Nhgri N, Gould SE, Lockart NC, Martin C, Struewing JP, Volpi S, Nimh N, Addington AM, Koester SE, Nida N, Little AR, Brigham LE, Hasz R, Hunter M, Johns C, Johnson M, Kopen G, Leinweber WF, Lonsdale JT, McDonald A, Mestichelli B, Myer K, Roe B, Salvatore M, Shad S, Thomas JA, Walters G, Washington M, Wheeler J, Bridge J, Foster BA, Gillard BM, Karasik E, Kumar R, Miklos M, Moser MT, Jewell SD, Montroy RG, Rohrer DC, Valley DR, Davis DA, Mash DC, Undale AH, Smith AM, Tabor DE, Roche NV, McLean JA, Vatanian N, Robinson KL, Sobin L, Barcus ME, Valentino KM, Qi L, Hunter S, Hariharan P, Singh S, Um KS, Matose T, Tomaszewski MM, Study E, Barker LK, Mosavel M, Siminoff LA, Traino HM, Flicek P, Juettemann T, Ruffier M, Sheppard D, Taylor K, Trevanion SJ, Zerbino DR, Craft B, Goldman M, Haeussler M, Kent WJ, Lee CM, Paten B, Rosenbloom KR, Vivian J, Zhu J

NATURE, 2017

doi:10.1038/nature24277.

The impact of rare variation on gene expression across tissues.

Li X, Kim Y, Sang EKT, Davis JR, Damani FN, Hiang CC, Hess GT, Zappala Z, Strober BJ, Scott AJ, Li A, Ganna A, Assik MCB, Merker JD, Hall IM, Attle AB, Montgomery SB

Nature, 2017

doi:10.1038/nature24267.

Dynamic landscape and regulation of RNA editing in mammals

Tan MH, Li Q, Shanmugam R, Piskol R, Kohler J, Young AN, Liu KI, Zhang R, Amaswami GR, Ariyoshi K, Gupte A, Keegan LP, George CX, Amu AR, Huang N, Pollina EA, Leeman DS, Ustighi AR, Goh YPS, Hawla AC, Del Sal G, Peltz G, Runet AB, Onrad DFC, Samuel CE, O'Connell MA, Walkley CR, Nishikura K, Li JB

NATURE, 2017

doi:10.1038/nature24041.

Landscape of X chromosome inactivation across human tissues.

Tukiainen T, Villani AC, Yen A, Rivas MA, Marshall JL, Satija R, Aguirre M, Gauthier L, Fleharty M, Kirby A, Ummings BBC, Astel SEC, Karczewski KJ, Aguet F, Byrnes A, Lappalainen T, Regev A, Ardlie KG, Hacohen N, MacArthur DG

Nature, 2017

doi:10.1038/nature24265.

Backmasking in the yeast genome: encoding overlapping information for protein-coding and RNA degradation.

Cakiroglu SA, Zaugg JB, Luscombe NM

Nucleic acids research, 2016

doi:10.1093/nar/gkw683.

SNPhood: investigate, quantify and visualise the epigenomic neighbourhood of SNPs using NGS data.

Arnold C, Bhat P, Zaugg JB

Bioinformatics (Oxford, England), 2016

doi:10.1093/bioinformatics/btw127.

Data-driven hypothesis weighting increases detection power in genome-scale multiple testing.

Ignatiadis N, Klaus B, Zaugg JB, Huber W

Nature methods, 2016

doi:10.1038/nmeth.3885.

Influence of the bleaching interval on the luminosity of long-term discolored enamel-dentin discs.

Zaugg LK, Lenherr P, Zaugg JB, Weiger R, Krastl G

Clinical oral investigations, 2016

doi:10.1007/s00784-015-1545-x.

Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions.

Grubert F, Zaugg JB, Kasowski M, Ursu O, Spacek DV, Martin AR, Greenside P, Srivas R, Phanstiel DH, Pekowska A, Heidari N, Euskirchen G, Huber W, Pritchard JK, Bustamante CD, Steinmetz LM, Kundaje A, Snyder M

2015

doi:10.1016/j.cell.2015.07.048.

Role of histone modifications and early termination in pervasive transcription and antisense-mediated gene silencing in yeast.

Castelnuovo M, Zaugg JB, Guffanti E, Maffioletti A, Camblong J, Xu Z, Clauder-Münster S, Steinmetz LM, Luscombe NM, Stutz F

Nucleic acids research, 2014

doi:10.1093/nar/gku100.

Extensive variation in chromatin states across humans

Kasowski M, Kyriazopoulou-Panagiotopoulou S, Grubert F, Zaugg JB, Kundaje A, Liu Y, Boyle AP, Zhang QC, Zakharia F, Spacek DV, Li J, Xie D, Olarerin-George A, Steinmetz LM, Hogenesch JB, Kellis M, Batzoglou S, Snyder M

Science (New York, N.Y.), 2013

doi:10.1126/science.1242510.

Gene loops enhance transcriptional directionality

Tan-Wong SM, Zaugg JB, Camblong J, Xu Z, Zhang DW, Mischo HE, Ansari AZ, Luscombe NM, Steinmetz LM, Proudfoot NJ

Science (New York, N.Y.), 2012

doi:10.1126/science.1224350.

A genomic model of condition-specific nucleosome behavior explains transcriptional activity in yeast

Zaugg JB, Luscombe NM

Genome research, 2012

doi:10.1101/gr.124099.111.