Author Correction: Cross-phyla protein annotation by structural prediction and alignment.

Ruperti F, Papadopoulos N, Musser JM, Mirdita M, Steinegger M, Arendt D

Genome biology, 2024

doi:10.1186/s13059-024-03196-9.

Somite-independent regeneration of the axolotl primary body axis.

Masselink W, Gerber T, Falcon F, Deshayes T, Papadopoulos S, Pende M, Jamwal VS, Taniguchi-Sugiura Y, Lin T, Kurth T, Wang J, Arendt D, Fei J, Treutlein B, Tanaka EM, Murawala P

bioRxiv, 2024

doi:10.1101/2024.01.31.577464.

Molecular profiling of sponge deflation reveals an ancient relaxant-inflammatory response.

Ruperti F, Becher I, Stokkermans A, Wang L, Marschlich N, Potel C, Maus E, Stein F, Drotleff B, Schippers KJ, Nickel M, Prevedel R, Musser JM, Savitski MM, Arendt D

Current biology : CB, 2023

doi:10.1016/j.cub.2023.12.021.

Publisher Correction: A lamprey neural cell type atlas illuminates the origins of the vertebrate brain.

Lamanna F, Hervas-Sotomayor F, Oel AP, Jandzik D, Sobrido-Cameán D, Santos-Durán GN, Martik ML, Stundl J, Green SA, Brüning T, Mößinger K, Schmidt J, Schneider C, Sepp M, Murat F, Smith JJ, Bronner ME, Rodicio MC, Barreiro-Iglesias A, Medeiros DM, Arendt D, Kaessmann H

Nature ecology & evolution, 2023

doi:10.1038/s41559-023-02227-1.

A lamprey neural cell type atlas illuminates the origins of the vertebrate brain.

Lamanna F, Hervas-Sotomayor F, Oel AP, Jandzik D, Sobrido-Cameán D, Santos-Durán GN, Martik ML, Stundl J, Green SA, Brüning T, Mößinger K, Schmidt J, Schneider C, Sepp M, Murat F, Smith JJ, Bronner ME, Rodicio MC, Barreiro-Iglesias A, Medeiros DM, Arendt D, Kaessmann H

Nature ecology & evolution, 2023

doi:10.1038/s41559-023-02170-1.

Cross-phyla protein annotation by structural prediction and alignment.

Ruperti F, Papadopoulos N, Musser JM, Mirdita M, Steinegger M, Arendt D

Genome biology, 2023

doi:10.1186/s13059-023-02942-9.

Characterization of eyes, photoreceptors, and opsins in developmental stages of the arrow worm Spadella cephaloptera (Chaetognatha).

Wollesen T, Rodriguez Monje SV, Oel AP, Arendt D

Journal of experimental zoology. Part B, Molecular and developmental evolution, 2023

doi:10.1002/jez.b.23193.

MorphoFeatures for unsupervised exploration of cell types, tissues, and organs in volume electron microscopy.

Zinchenko V, Hugger J, Uhlmann V, Arendt D, Kreshuk A

eLife, 2023

doi:10.7554/eLife.80918.

MoBIE: a Fiji plugin for sharing and exploration of multi-modal cloud-hosted big image data.

Pape C, Meechan K, Moreva E, Schorb M, Chiaruttini N, Zinchenko V, Martinez Vergara H, Mizzon G, Moore J, Arendt D, Kreshuk A, Schwab Y, Tischer C

Nature methods, 2023

doi:10.1038/s41592-023-01776-4.

Priorities for ocean microbiome research.

Tara Ocean Foundation, Tara Oceans, European Molecular Biology Laboratory (EMBL), European Marine Biological Resource Centre - European Research Infrastructure Consortium (EMBRC-ERIC)

Nature microbiology, 2022

doi:10.1038/s41564-022-01145-5.

Molecular biology for green recovery- a call for action.

Rodríguez-Martínez M, Nielsen J, Dupont S, Vamathevan J, Glover BJ, Crosswell LC, Rouse B, Luisi BF, Bowler C, Gasser SM, Arendt D, Erb TJ, de Lorenzo V, Heard E, Patil KR

PLoS biology, 2022

doi:10.1371/journal.pbio.3001623.

Evolution of new cell types at the lateral neural border.

Stundl J, Bertucci PY, Lauri A, Arendt D, Bronner ME

Current topics in developmental biology, 2021

doi:10.1016/bs.ctdb.2020.11.005.

Profiling cellular diversity in sponges informs animal cell type and nervous system evolution.

Musser JM, Schippers KJ, Nickel M, Mizzon G, Kohn AB, Pape C, Ronchi P, Papadopoulos N, Tarashansky AJ, Hammel JU, Wolf F, Liang C, Hernández-Plaza A, Cantalapiedra CP, Achim K, Schieber NL, Pan L, Ruperti F, Francis WR, Vargas S, Kling S, Renkert M, Polikarpov M, Bourenkov G, Feuda R, Gaspar I, Burkhardt P, Wang B, Bork P, Beck M, Schneider TR, Kreshuk A, Wörheide G, Huerta-Cepas J, Schwab Y, Moroz LL, Arendt D

Science (New York, N.Y.), 2021

doi:10.1126/science.abj2949.

The conserved core of the nereid brain: circular CNS, apical nervous system and lhx6-arx-dlx neurons.

Arendt D, Urzainqui IQ, Vergara HM

Current opinion in neurobiology, 2021

doi:10.1016/j.conb.2021.11.008.

Single cell RNA sequencing of the Strongylocentrotus purpuratus larva reveals the blueprint of major cell types and nervous system of a non-chordate deuterostome.

Paganos P, Voronov D, Musser JM, Arendt D, Arnone MI

eLife, 2021

doi:10.7554/eLife.70416.

The Nereid on the rise: Platynereis as a model system.

Özpolat BD, Randel N, Williams EA, Bezares-Calderón LA, Andreatta G, Balavoine G, Bertucci PY, Ferrier DEK, Gambi MC, Gazave E, Handberg-Thorsager M, Hardege J, Hird C, Hsieh YW, Hui J, Mutemi KN, Schneider SQ, Simakov O, Vergara HM, Vervoort M, Jékely G, Tessmar-Raible K, Raible F, Arendt D

EvoDevo, 2021

doi:10.1186/s13227-021-00180-3.

Animal evolution: Of flame and collar cells.

Arendt D

Current biology : CB, 2021

doi:10.1016/j.cub.2021.07.006.

Whole-body integration of gene expression and single-cell morphology.

Vergara HM, Pape C, Meechan KI, Zinchenko V, Genoud C, Wanner AA, Mutemi KN, Titze B, Templin RM, Bertucci PY, Simakov O, Dürichen W, Machado P, Savage EL, Schermelleh L, Schwab Y, Friedrich RW, Kreshuk A, Tischer C, Arendt D

Cell, 2021

doi:10.1016/j.cell.2021.07.017.

The dorsoanterior brain of adult amphioxus shares similarities in expression profile and neuronal composition with the vertebrate telencephalon.

Benito-Gutiérrez È, Gattoni G, Stemmer M, Rohr SD, Schuhmacher LN, Tang J, Marconi A, Jékely G, Arendt D

BMC biology, 2021

doi:10.1186/s12915-021-01045-w.

Mapping single-cell atlases throughout Metazoa unravels cell type evolution.

Tarashansky AJ, Musser JM, Khariton M, Li P, Arendt D, Quake SR, Wang B

eLife, 2021

doi:10.7554/eLife.66747.

Elementary nervous systems.

Arendt D

Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2021

doi:10.1098/rstb.2020.0347.

Uncovering cognitive similarities and differences, conservation and innovation.

Levin M, Keijzer F, Lyon P, Arendt D

Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2021

doi:10.1098/rstb.2020.0458.

Author Correction: A community-based transcriptomics classification and nomenclature of neocortical cell types.

Yuste R, Hawrylycz M, Aalling N, Aguilar-Valles A, Arendt D, Armañanzas R, Ascoli GA, Bielza C, Bokharaie V, Bergmann TB, Bystron I, Capogna M, Chang Y, Clemens A, de Kock CPJ, DeFelipe J, Dos Santos SE, Dunville K, Feldmeyer D, Fiáth R, Fishell GJ, Foggetti A, Gao X, Ghaderi P, Goriounova NA, Güntürkün O, Hagihara K, Hall VJ, Helmstaedter M, Herculano-Houzel S, Hilscher MM, Hirase H, Hjerling-Leffler J, Hodge R, Huang J, Huda R, Khodosevich K, Kiehn O, Koch H, Kuebler ES, Kühnemund M, Larrañaga P, Lelieveldt B, Louth EL, Lui JH, Mansvelder HD, Marin O, Martinez-Trujillo J, Chameh HM, Mohapatra AN, Munguba H, Nedergaard M, Němec P, Ofer N, Pfisterer UG, Pontes S, Redmond W, Rossier J, Sanes JR, Scheuermann RH, Serrano-Saiz E, Staiger JF, Somogyi P, Tamás G, Tolias AS, Tosches MA, García MT, Wozny C, Wuttke TV, Liu Y, Yuan J, Zeng H, Lein E

Nature neuroscience, 2021

doi:10.1038/s41593-020-00779-0.

Reframing cognition: getting down to biological basics.

Lyon P, Keijzer F, Arendt D, Levin M

Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2021

doi:10.1098/rstb.2019.0750.

Publisher correction: a community-based transcriptomics classification and nomenclature of neocortical cell types.

Yuste R, Hawrylycz M, Aalling N, Aguilar-Valles A, Arendt D, Arnedillo RA, Ascoli GA, Bielza C, Bokharaie V, Bergmann TB, Bystron I, Capogna M, Chang Y, Clemens A, de Kock CPJ, DeFelipe J, Dos Santos SE, Dunville K, Feldmeyer D, Fiáth R, Fishell GJ, Foggetti A, Gao X, Ghaderi P, Goriounova NA, Güntürkün O, Hagihara K, Hall VJ, Helmstaedter M, Herculano S, Hilscher MM, Hirase H, Hjerling-Leffler J, Hodge R, Huang J, Huda R, Khodosevich K, Kiehn O, Koch H, Kuebler ES, Kühnemund M, Larrañaga P, Lelieveldt B, Louth EL, Lui JH, Mansvelder HD, Marin O, Martinez-Trujillo J, Moradi Chameh H, Nath A, Nedergaard M, Němec P, Ofer N, Pfisterer UG, Pontes S, Redmond W, Rossier J, Sanes JR, Scheuermann R, Serrano-Saiz E, Steiger JF, Somogyi P, Tamás G, Tolias AS, Tosches MA, García MT, Vieira HM, Wozny C, Wuttke TV, Yong L, Yuan J, Zeng H, Lein E

Nature neuroscience, 2020

doi:10.1038/s41593-020-00768-3.

A community-based transcriptomics classification and nomenclature of neocortical cell types.

Yuste R, Hawrylycz M, Aalling N, Aguilar-Valles A, Arendt D, Arnedillo RA, Ascoli GA, Bielza C, Bokharaie V, Bergmann TB, Bystron I, Capogna M, Chang Y, Clemens A, de Kock CPJ, Dos Santos SE, DeFelipe J, Feldmeyer D, Dunville K, Fishell GJ, Fiáth R, Gao X, Foggetti A, Goriounova NA, Ghaderi P, Hagihara K, Güntürkün O, Helmstaedter M, Hall VJ, Hilscher MM, Herculano S, Hodge R, Huang J, Hirase H, Hjerling-Leffler J, Kiehn O, Koch H, Huda R, Khodosevich K, Larrañaga P, Lelieveldt B, Kuebler ES, Kühnemund M, Mansvelder HD, Marin O, Louth EL, Lui JH, Nedergaard M, Nath A, Moradi Chameh H, Martinez-Trujillo J, Pontes S, Pfisterer UG, Ofer N, Němec P, Scheuermann R, Sanes JR, Rossier J, Redmond W, Tamás G, Somogyi P, Steiger JF, Serrano-Saiz E, Wozny C, Wuttke TV, Yong L, Yuan J, Tolias AS, Tosches MA, García MT, Vieira HM, Zeng H, Lein E

Nature neuroscience, 2020

doi:10.1038/s41593-020-0685-8.

The evolutionary assembly of neuronal machinery.

Arendt D

CURRENT BIOLOGY, 2020

doi:10.1016/j.cub.2020.04.008.

A behavioral assay to study effects of retinoid pharmacology on nervous system development in a marine annelid.

Handberg-Thorsager M, Ulman V, Tomançak P, Arendt D, Schubert M

Methods in molecular biology (Clifton, N.J.), 2019

doi:10.1007/978-1-4939-9585-1_14.

Author correction: the mid-developmental transition and the evolution of animal body plans.

Levin M, Anavy L, Cole AG, Winter E, Mostov N, Khair S, Senderovich N, Kovalev E, Silver DH, Feder M, Fernandez-Valverde SL, Nakanishi N, Simmons D, Simakov O, Larsson T, Jerafi-Vider A, Liu SY, Ryan JF, Yaniv K, Rink JC, Martindale MQ, Degnan SM, Arendt D, Hashimshony T, Degnan BM, Yanai I

Nature, 2019

doi:10.1038/s41586-019-1698-x.

From spiral cleavage to bilateral symmetry: the developmental cell lineage of the annelid brain.

Vopalensky P, Tosches MA, Achim K, Handberg-Thorsager M, Arendt D

BMC biology, 2019

doi:10.1186/s12915-019-0705-x.

Remnants of ancestral larval eyes in an eyeless mollusk? Molecular characterization of photoreceptors in the scaphopod Antalis entalis.

Wollesen T, McDougall C, Arendt D

EVODEVO, 2019

doi:10.1186/s13227-019-0140-7.

Many ways to build a polyp.

Arendt D

Trends in genetics : TIG, 2019

doi:10.1016/j.tig.2019.09.003.

Evolution of neuronal types and families.

Arendt D, Bertucci PY, Achim K, Musser JM

Current opinion in neurobiology, 2019

doi:10.1016/j.conb.2019.01.022.

Whole-head recording of chemosensory activity in the marine annelid Platynereis dumerilii.

Chartier TF, Deschamps J, Dürichen W, Jékely G, Arendt D

Open biology, 2018

doi:10.1098/rsob.180139.

Hox genes and body segmentation.

Arendt D

Science (New York, N.Y.), 2018

doi:10.1126/science.aav0692.

Evolution of the bilaterian mouth and anus.

Nielsen C, Brunet T, Arendt D

Nature ecology & evolution, 2018

doi:10.1038/s41559-018-0641-0.

Whole-body single-cell sequencing reveals transcriptional domains in the annelid larval body

Achim K, Eling N, Vergara HM, Bertucci PY, Musser J, Vopalensky P, Brunet T, Collier P, Benes V, Marioni JC, Arendt D

2018

doi:10.1093/molbev/msx336.

Animal Evolution: Convergent Nerve Cords?

Arendt D

Current biology : CB, 2018

doi:10.1016/j.cub.2018.01.056.

The ancestral retinoic acid receptor was a low-affinity sensor triggering neuronal differentiation.

Handberg-Thorsager M, Gutierrez-Mazariegos J, Nadendla EK, Bertucci PY, Arold ST, Tomançak P, Pierzchalski K, Jones JW, Albalat R, Kane MA, Bourhuet W, Laudet V, Arendt D, Schubert M

2018

doi:10.1126/sciadv.aao1261.

Loss and gain of cone types in vertebrate ciliary photoreceptor evolution.

Musser JM, Arendt D

Developmental biology, 2017

doi:10.1016/j.ydbio.2017.08.038.

Editorial - Development and evolution of sensory cells and organs.

Schlosser G, Musser J, Arendt D

Developmental biology, 2017

doi:10.1016/j.ydbio.2017.09.007.

The enigmatic xenopsins.

Arendt D

eLife, 2017

doi:10.7554/eLife.31781.

How Single-Cell Genomics Is Changing Evolutionary and Developmental Biology.

Marioni JC, Arendt D

Annual review of cell and developmental biology, 2017

doi:10.1146/annurev-cellbio-100616-060818.

Whole-organism cellular gene-expression atlas reveals conserved cell types in the ventral nerve cord of Platynereis dumerilii.

Vergara HM, Bertucci PY, Hantz P, Tosches MA, Achim K, Vopalensky P, Arendt D

Proceedings of the National Academy of Sciences of the United States of America, 2017

doi:10.1073/pnas.1610602114.

The evolutionary origin of bilaterian smooth and striated myocytes.

Brunet T, Fischer AH, Steinmetz PR, Lauri A, Bertucci P, Arendt D

eLife, 2016

doi:10.7554/elife.19607.

The origin and evolution of cell types.

Arendt D, Musser JM, Baker CV, Bergman A, Cepko C, Erwin DH, Pavlicev M, Schlosser G, Widder S, Laubichler MD, Wagner GP

Nature reviews. Genetics, 2016

doi:10.1038/nrg.2016.127.

Editorial overview: Developmental mechanisms, patterning and evolution: New models for genetics and development - diversity at last

Arendt D, Extavour C

Current opinion in genetics & development, 2016

doi:10.1016/j.gde.2016.10.003.

Big Questions in Evolution

Arendt D, King N, Carroll SB, Wittkopp P, Koonin E, Kruglyak L

CELL, 2016

doi:10.1016/j.cell.2016.07.021.

Animal Evolution: The Hard Problem of Cartilage Origins.

Brunet T, Arendt D

Current biology : CB, 2016

doi:10.1016/j.cub.2016.05.062.

Old knowledge and new technologies allow rapid development of model organisms.

Cook CE, Chenevert J, Larsson TA, Arendt D, Houliston E, Lénárt P

Molecular biology of the cell, 2016

doi:10.1091/mbc.e15-10-0682.

The mid-developmental transition and the evolution of animal body plans.

Levin M, Anavy L, Cole AG, Winter E, Mostov N, Khair S, Senderovich N, Kovalev E, Silver DH, Feder M, Fernandez-Valverde SL, Nakanishi N, Simmons D, Simakov O, Larsson T, Liu SY, Jerafi-Vider A, Yaniv K, Ryan JF, Martindale MQ, Rink JC, Arendt D, Degnan SM, Degnan BM, Hashimshony T, Yanai I

Nature, 2016

doi:10.1038/nature16994.

From damage response to action potentials: early evolution of neural and contractile modules in stem eukaryotes.

Brunet T, Arendt D

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2015

doi:10.1098/rstb.2015.0043.

Neurotrophin, p75, and Trk Signaling Module in the Developing Nervous System of the Marine Annelid Platynereis dumerilii.

Lauri A, Bertucci P, Arendt D

BioMed research international, 2016

doi:10.1155/2016/2456062.

Gastric pouches and the mucociliary sole: setting the stage for nervous system evolution.

Arendt D, Benito-Gutierrez E, Brunet T, Marlow H

Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2015

doi:10.1098/rstb.2015.0286.

From nerve net to nerve ring, nerve cord and brain - evolution of the nervous system.

Arendt D, Tosches MA, Marlow H

Nature reviews. Neuroscience, 2015

doi:10.1038/nrn.2015.15.

Quantifying preferences and responsiveness of marine zooplankton to changing environmental conditions using microfluidics.

Ramanathan N, Simakov O, Merten CA, Arendt D

PloS one, 2015

doi:10.1371/journal.pone.0140553.

Did the notochord evolve from an ancient axial muscle? The axochord hypothesis.

Brunet T, Lauri A, Arendt D

BioEssays : news and reviews in molecular, cellular and developmental biology, 2015

doi:10.1002/bies.201500027.

High-throughput spatial mapping of single-cell RNA-seq data to tissue of origin.

Achim K, Pettit JB, Saraiva LR, Gavriouchkina D, Larsson T, Arendt D, Marioni JC

Nature biotechnology, 2015

doi:10.1038/nbt.3209.

Effects of low seawater pH on the marine polychaete Platynereis dumerilii.

Wäge J, Hardege JD, Larsson TA, Simakov O, Chapman EC, Arendt D, Rotchell JM

Marine pollution bulletin, 2015

doi:10.1016/j.marpolbul.2015.04.027.

Melatonin signaling controls circadian swimming behavior in marine zooplankton

Tosches MA, Bucher D, Vopalensky P, Arendt D

Cell, 2014

doi:10.1016/j.cell.2014.07.042.

Development of the annelid axochord: insights into notochord evolution.

Lauri A, Brunet T, Handberg-Thorsager M, Fischer AH, Simakov O, Steinmetz PR, Tomer R, Keller PJ, Arendt D

Science (New York, N.Y.), 2014

doi:10.1126/science.1253396.

Evolution: ctenophore genomes and the origin of neurons

Marlow H, Arendt D

Current biology : CB, 2014

doi:10.1016/j.cub.2014.06.057.

Structural evolution of cell types by step-wise assembly of cellular modules

Achim K, Arendt D

Current opinion in genetics & development, 2014

doi:10.1016/j.gde.2014.05.001.

Illuminating the base of the annelid tree using transcriptomics

Weigert A, Helm C, Meyer M, Nickel B, Arendt D, Hausdorf B, Santos SR, Halanych KM, Purschke G, Bleidorn C, Struck TH

Molecular biology and evolution, 2014

doi:10.1093/molbev/msu080.

Larval body patterning and apical organs are conserved in animal evolution.

Marlow H, Tosches MA, Tomer R, Steinmetz PR, Lauri A, Larsson T, Arendt D

BMC biology, 2014

doi:10.1186/1741-7007-12-7.

The bilaterian forebrain: an evolutionary chimaera

Tosches MA, Arendt D

Current opinion in neurobiology, 2013

doi:10.1016/j.conb.2013.09.005.

Linking micro- and macro-evolution at the cell type level: a view from the lophotrochozoan Platynereis dumerilii

Simakov O, Larsson TA, Arendt D

Briefings in functional genomics, 2013

doi:10.1093/bfgp/els049.

Mesoteloblast-like mesodermal stem cells in the polychaete annelid Platynereis dumerilii (Nereididae)

Fischer AH, Arendt D

Journal of experimental zoology. Part B, Molecular and developmental evolution, 2013

doi:10.1002/jez.b.22486.

Methods for generating year-round access to amphioxus in the laboratory

Benito-Gutiérrez E, Weber H, Bryant DV, Arendt D

PloS one, 2013

doi:10.1371/journal.pone.0071599.

Somatic and visceral nervous systems - an ancient duality

Bertucci P, Arendt D

BMC biology, 2013

doi:10.1186/1741-7007-11-54.

Evolution of clitellate phaosomes from rhabdomeric photoreceptor cells of polychaetes - a study in the leech Helobdella robusta (Annelida, Sedentaria, Clitellata)

Döring C, Gosda J, Tessmar-Raible K, Hausen H, Arendt D, Purschke G

Frontiers in zoology, 2013

doi:10.1186/1742-9994-10-52.

Insights into bilaterian evolution from three spiralian genomes

Simakov O, Marletaz F, Cho SJ, Edsinger-Gonzales E, Havlak P, Hellsten U, Kuo DH, Larsson T, Lv J, Arendt D, Savage R, Osoegawa K, de Jong P, Grimwood J, Chapman JA, Shapiro H, Aerts A, Otillar RP, Terry AY, Boore JL, Grigoriev IV, Lindberg DR, Seaver EC, Weisblat DA, Putnam NH, Rokhsar DS

Nature, 2013

doi:10.1038/nature11696.

Molecular analysis of the amphioxus frontal eye unravels the evolutionary origin of the retina and pigment cells of the vertebrate eye

Vopalensky P, Pergner J, Liegertova M, Benito-Gutierrez E, Arendt D, Kozmik Z

Proceedings of the National Academy of Sciences of the United States of America, 2012

doi:10.1073/pnas.1207580109.

Extensive chordate and annelid macrosynteny reveals ancestral homeobox gene organization

Hui JH, McDougall C, Monteiro AS, Holland PW, Arendt D, Balavoine G, Ferrier DE

Molecular biology and evolution, 2012

doi:10.1093/molbev/msr175.

Identifying single copy orthologs in Metazoa

Creevey CJ, Muller J, Doerks T, Thompson JD, Arendt D, Bork P

PLoS computational biology, 2011

doi:10.1371/journal.pcbi.1002269.

A holistic approach to marine eco-systems biology

Karsenti E, Acinas SG, Bork P, Bowler C, De Vargas C, Raes J, Sullivan M, Arendt D, Benzoni F, Claverie JM, Follows M, Gorsky G, Hingamp P, Iudicone D, Jaillon O, Kandels-Lewis S, Krzic U, Not F, Ogata H, Pesant S, Reynaud EG, Sardet C, Sieracki ME, Speich S, Velayoudon D, Weissenbach J, Wincker P, Tara Oceans Consortium

PLoS biology, 2011

doi:10.1371/journal.pbio.1001177.

Evolutionary biology: Annelid who's who

Arendt D

Nature, 2011

doi:10.1038/471044a.

The segmental pattern of otx, gbx, and Hox genes in the annelid Platynereis dumerilii

Steinmetz PR, Kostyuchenko RP, Fischer A, Arendt D

Evolution & development, 2011

doi:10.1111/j.1525-142x.2010.00457.x.

Profiling by image registration reveals common origin of annelid mushroom bodies and vertebrate pallium

Tomer R, Denes AS, Tessmar-Raible K, Arendt D

Cell, 2010

doi:10.1016/j.cell.2010.07.043.

Hedgehog signaling regulates segment formation in the annelid Platynereis

Dray N, Tessmar-Raible K, Le Gouar M, Vibert L, Christodoulou F, Schipany K, Guillou A, Zantke J, Snyman H, Béhague J, Vervoort M, Arendt D, Balavoine G

Science (New York, N.Y.), 2010

doi:10.1126/science.1188913.

Three consecutive generations of nephridia occur during development of Platynereis dumerilii (Annelida, Polychaeta)

Hasse C, Rebscher N, Reiher W, Sobjinski K, Moerschel E, Beck L, Tessmar-Raible K, Arendt D, Hassel M

Developmental dynamics : an official publication of the American Association of Anatomists, 2010

doi:10.1002/dvdy.22331.

Stress response in tardigrades: differential gene expression of molecular chaperones

Reuner A, Hengherr S, Mali B, Förster F, Arndt D, Reinhardt R, Dandekar T, Frohme M, Brümmer F, Schill RO

Cell stress & chaperones, 2010

doi:10.1007/s12192-009-0158-1.

Ancient animal microRNAs and the evolution of tissue identity

Christodoulou F, Raible F, Tomer R, Simakov O, Trachana K, Klaus S, Snyman H, Hannon GJ, Bork P, Arendt D

Nature, 2010

doi:10.1038/nature08744.

The normal development of Platynereis dumerilii (Nereididae, Annelida)

Fischer AH, Henrich T, Arendt D

Frontiers in zoology, 2010

doi:10.1186/1742-9994-7-31.

AQUA: automated quality improvement for multiple sequence alignments

Muller J, Creevey CJ, Thompson JD, Arendt D, Bork P

Bioinformatics (Oxford, England), 2010

doi:10.1093/bioinformatics/btp651.

Six3 demarcates the anterior-most developing brain region in bilaterian animals

Steinmetz PR, Urbach R, Posnien N, Eriksson J, Kostyuchenko RP, Brena C, Guy K, Akam M, Bucher G, Arendt D

EvoDevo, 2010

doi:10.1186/2041-9139-1-14.

The 'division of labour' model of eye evolution

Arendt D, Hausen H, Purschke G

Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2009

doi:10.1098/rstb.2009.0104.

The evolution of phototransduction and eyes

Lamb TD, Arendt D, Collin SP

Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2009

doi:10.1098/rstb.2009.0106.

CNS evolution: new insight from the mud

Benito-Gutiérrez E, Arendt D

Current biology : CB, 2009

doi:10.1016/j.cub.2009.06.020.

To be or not to be a flatworm: the acoel controversy

Egger B, Steinke D, Tarui H, De Mulder K, Arendt D, Borgonie G, Funayama N, Gschwentner R, Hartenstein V, Hobmayer B, Hooge M, Hrouda M, Ishida S, Kobayashi C, Kuales G, Nishimura O, Pfister D, Rieger R, Salvenmoser W, Smith J, Technau U, Tyler S, Agata K, Salzburger W, Ladurner P

PloS one, 2009

doi:10.1371/journal.pone.0005502.

Features of the ancestral bilaterian inferred from Platynereis dumerilii ParaHox genes

Hui JH, Raible F, Korchagina N, Dray N, Samain S, Magdelenat G, Jubin C, Segurens B, Balavoine G, Arendt D, Ferrier DE

BMC biology, 2009

doi:10.1186/1741-7007-7-43.

Eye evolution: the blurry beginning

Nilsson DE, Arendt D

Current biology : CB, 2008

doi:10.1016/j.cub.2008.10.025.

The evolution of cell types in animals: emerging principles from molecular studies

Arendt D

Nature reviews. Genetics, 2008

doi:10.1038/nrg2416.

Mechanism of phototaxis in marine zooplankton

Jékely G, Colombelli J, Hausen H, Guy K, Stelzer E, Nédélec F, Arendt D

Nature, 2008

doi:10.1038/nature07590.

The evolution of nervous system centralization

Arendt D, Denes AS, Jékely G, Tessmar-Raible K

Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2008

doi:10.1098/rstb.2007.2242.

4DXpress: a database for cross-species expression pattern comparisons

Haudry Y, Berube H, Letunic I, Weeber PD, Gagneur J, Girardot C, Kapushesky M, Arendt D, Bork P, Brazma A, Furlong EE, Wittbrodt J, Henrich T

Nucleic acids research, 2008

doi:10.1093/nar/gkm797.

atonal- and achaete-scute-related genes in the annelid Platynereis dumerilii: insights into the evolution of neural basic-Helix-Loop-Helix genes

Simionato E, Kerner P, Dray N, Le Gouar M, Ledent V, Arendt D, Vervoort M

BMC evolutionary biology, 2008

doi:10.1186/1471-2148-8-170.

Cellular resolution expression profiling using confocal detection of NBT/BCIP precipitate by reflection microscopy

Jékely G, Arendt D

BioTechniques, 2007

doi:10.2144/000112462.

Vasa unveils a common origin of germ cells and of somatic stem cells from the posterior growth zone in the polychaete Platynereis dumerilii

Rebscher N, Zelada-González F, Banisch TU, Raible F, Arendt D

Developmental biology, 2007

doi:10.1016/j.ydbio.2007.03.521.

Conserved sensory-neurosecretory cell types in annelid and fish forebrain: insights into hypothalamus evolution

Tessmar-Raible K, Raible F, Christodoulou F, Guy K, Rembold M, Hausen H, Arendt D

Cell, 2007

doi:10.1016/j.cell.2007.04.041.

Molecular architecture of annelid nerve cord supports common origin of nervous system centralization in bilateria

Denes AS, Jékely G, Steinmetz PR, Raible F, Snyman H, Prud'homme B, Ferrier DE, Balavoine G, Arendt D

Cell, 2007

doi:10.1016/j.cell.2007.02.040.

Polychaete trunk neuroectoderm converges and extends by mediolateral cell intercalation

Steinmetz PR, Zelada-Gonzáles F, Burgtorf C, Wittbrodt J, Arendt D

Proceedings of the National Academy of Sciences of the United States of America, 2007

doi:10.1073/pnas.0606589104.

Duplication of the ribosomal gene cluster in the marine polychaete Platynereis dumerilii correlates with ITS polymorphism

Hui JHL, Kortchagina N, Arendt D, Balavoine G, Ferrier DEK

Journal of the Marine Biological Association of the United Kingdom. Marine Biological Association of the United Kingdom, 2007

doi:.

Hox gene expression in larval development of the polychaetes Nereis virens and Platynereis dumerilii (Annelida, Lophotrochozoa)

Kulakova M, Bakalenko N, Novikova E, Cook CE, Eliseeva E, Steinmetz PR, Kostyuchenko RP, Dondua A, Arendt D, Akam M, Andreeva T

Development genes and evolution, 2007

doi:10.1007/s00427-006-0119-y.

The expression of a hunchback ortholog in the polychaete annelid Platynereis dumerilii suggests an ancestral role in mesoderm development and neurogenesis

Kerner P, Zelada González F, Le Gouar M, Ledent V, Arendt D, Vervoort M

Development genes and evolution, 2006

doi:10.1007/s00427-006-0100-9.

Photoreceptor cells and eyes in Annelida

Purschke G, Arendt D, Hausen H, Müller MC

Arthropod structure & development, 2006

doi:10.1016/j.asd.2006.07.005.

Opsins and clusters of sensory G-protein-coupled receptors in the sea urchin genome

Raible F, Tessmar-Raible K, Arboleda E, Kaller T, Bork P, Arendt D, Arnone MI

Developmental biology, 2006

doi:10.1016/j.ydbio.2006.08.070.

Evolution of intraflagellar transport from coated vesicles and autogenous origin of the eukaryotic cilium

Jékely G, Arendt D

BioEssays : news and reviews in molecular, cellular and developmental biology, 2006

doi:10.1002/bies.20369.

A Kernel Bears Fruit

Arendt D

Science (New York, N.Y.), 2006

doi:10.1126/science.1134545.

Genes and homology in nervous system evolution: comparing gene functions, expression patterns, and cell type molecular fingerprints

Arendt D

Theory in biosciences = Theorie in den Biowissenschaften, 2005

doi:10.1016/j.thbio.2005.08.002.

Vertebrate-type intron-rich genes in the marine annelid Platynereis dumerilii

Raible F, Tessmar-Raible K, Osoegawa K, Wincker P, Jubin C, Balavoine G, Ferrier D, Benes V, de Jong P, Weissenbach J, Bork P, Arendt D

Science (New York, N.Y.), 2005

doi:10.1126/science.1119089.

Fluorescent two-color whole mount in situ hybridization in Platynereis dumerilii (Polychaeta, Annelida), an emerging marine molecular model for evolution and development

Tessmar-Raible K, Steinmetz PR, Snyman H, Hassel M, Arendt D

BioTechniques, 2005

doi:10.2144/000112023.

Ancestry of Photic and Mechanic Sensation?

Fritzsch B, Piatigorsky J, Tessmar-Raible K, Jékely G, Guy K, Raible F, Wittbrodt J, Arendt D

Science (New York, N.Y.), 2005

doi:10.1126/science.308.5725.1113.

New animal models for evolution and development

Tessmar-Raible K, Arendt D

Genome biology, 2005

doi:10.1186/gb-2004-6-1-303.

Ciliary photoreceptors with a vertebrate-type opsin in an invertebrate brain

Arendt D, Tessmar-Raible K, Snyman H, Dorresteijn AW, Wittbrodt J

Science (New York, N.Y.), 2004

doi:10.1126/science.1099955.

Metazoan evolution: some animals are more equal than others

Raible F, Arendt D

Current biology : CB, 2004

doi:10.1016/s0960-9822(04)00030-2.

Comparative aspects of gastrulation

Arendt D

2004

doi:.

Arthropod-like expression patterns of engrailed and wingless in the annelid Platynereis dumerilii suggest a role in segment formation

Prud'homme B, de Rosa R, Arendt D, Julien JF, Pajaziti R, Dorresteijn AW, Adoutte A, Wittbrodt J, Balavoine G

Current biology : CB, 2003

doi:10.1016/j.cub.2003.10.006.

Emerging systems: between vertebrates and arthropods, the Lophotrochozoa

Tessmar-Raible K, Arendt D

Current opinion in genetics & development, 2003

doi:10.1016/s0959-437x(03)00086-8.

Evolution of eyes and photoreceptor cell types

Arendt D

The International journal of developmental biology, 2003

doi:.

Spiralians in the limelight

Arendt D

Genome biology, 2003

doi:10.1186/gb-2003-5-1-303.

Development of pigment-cup eyes in the polychaete Platynereis dumerilii and evolutionary conservation of larval eyes in Bilateria

Arendt D, Tessmar K, de Campos-Baptista MI, Dorresteijn A, Wittbrodt J

Development (Cambridge, England), 2002

doi:.

Reconstructing the eyes of Urbilateria

Arendt D, Wittbrodt J

Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2001

doi:10.1098/rstb.2001.0971.

Medaka eyeless is the key factor linking retinal determination and eye growth

Loosli F, Winkler S, Burgtorf C, Wurmbach E, Ansorge W, Henrich T, Grabher C, Arendt D, Carl M, Krone A, Grzebisz E, Wittbrodt J

Development (Cambridge, England), 2001

doi:.

Evolution of the bilaterian larval foregut

Arendt D, Technau U, Wittbrodt J

Nature, 2001

doi:10.1038/35051075.

Comparison of early nerve cord development in insects and vertebrates

Arendt D, Nübler-Jung K

Development (Cambridge, England), 1999

doi:.

Dorsoventral axis inversion: Enteropneust anatomy links invertebrates to chordates turned upside down

Nubler-Jung K, Arendt D

JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH, 1999

doi:10.1046/j.1439-0469.1999.372106.x.

Rearranging gastrulation in the name of yolk: evolution of gastrulation in yolk-rich amniote eggs

Arendt D, Nübler-Jung K

Mechanisms of development, 1999

doi:10.1016/s0925-4773(98)00226-3.

Dorsal or ventral: similarities in fate maps and gastrulation patterns in annelids, arthropods and chordates

Arendt D, Nübler-Jung K

Mechanisms of development, 1997

doi:10.1016/s0925-4773(96)00620-x.

Enteropneusts and chordate evolution

Nübler-Jung K, Arendt D

Current biology : CB, 1996

doi:10.1016/s0960-9822(02)00491-8.

Common ground plans in early brain development in mice and flies

Arendt D, Nübler-Jung K

BioEssays : news and reviews in molecular, cellular and developmental biology, 1996

doi:10.1002/bies.950180314.

Inversion of dorsoventral axis?

Arendt D, Nübler-Jung K

Nature, 1994

doi:10.1038/371026a0.

Is ventral in insects dorsal in vertebrates? A history of embryological arguments favouring axis inversion in chordate ancestors

Nübler-Jung K, Arendt D

ROUXS ARCHIVES OF DEVELOPMENTAL BIOLOGY, 1994

doi:10.1007/BF00188683.

Blocked endocytotic uptake by the oocyte causes accumulation of vitellogenins in the haemolymph of the female-sterile mutants quitPX61 and stand stillPS34 of Drosophila

Gutzeit HO, Arendt D

Cell and tissue research, 1994

doi:10.1007/bf00319427.