Kleywegt GJ, Adams PD, Butcher SJ, Lawson CL, Rohou A, Rosenthal PB, Subramaniam S, Topf M, Abbott S, Baldwin PR, Berrisford JM, Bricogne G, Choudhary P, Croll TI, Danev R, Ganesan SJ, Grant T, Gutmanas A, Henderson R, Heymann JB, Huiskonen JT, Istrate A, Kato T, Lander GC, Lok SM, Ludtke SJ, Murshudov GN, Pye R, Pintilie GD, Richardson JS, Sachse C, Salih O, Scheres SHW, Schroeder GF, Sorzano COS, Stagg SM, Wang Z, Warshamanage R, Westbrook JD, Winn MD, Young JY, Burley SK, Hoch JC, Kurisu G, Morris K, Patwardhan A, Velankar S.
IUCrJ,
2024
doi:10.1107/s2052252524001246.
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Nucleic Acids Res,
2024
doi:10.1093/nar/gkad1019.
Xu W, Velankar S, Patwardhan A, Hoch JC, Burley SK, Kurisu G.
Acta Crystallogr D Struct Biol,
2023
doi:10.1107/s2059798323006381.
Iudin A, Hartley M, Kleywegt GJ, Patwardhan A.
Methods Cell Biol,
2023
doi:10.1016/bs.mcb.2023.02.002.
Collinson LM, Bosch C, Bullen A, Burden JJ, Carzaniga R, Cheng C, Darrow MC, Fletcher G, Johnson E, Narayan K, Peddie CJ, Winn M, Wood C, Patwardhan A, Kleywegt GJ, Verkade P.
Nat Methods,
2023
doi:10.1038/s41592-023-01861-8.
Iudin A, Korir PK, Somasundharam S, Weyand S, Cattavitello C, Fonseca N, Salih O, Kleywegt GJ, Patwardhan A.
Nucleic Acids Res,
2023
doi:10.1093/nar/gkac1062.
Iudin A, Korir PK, Somasundharam S, Weyand S, Cattavitello C, Fonseca N, Salih O, Kleywegt GJ, Patwardhan A.
2022
doi:10.1101/2022.10.04.510785.
Wang Z, Patwardhan A, Kleywegt GJ.
Acta Crystallogr D Struct Biol,
2022
doi:10.1107/s205979832200328x.
Hartley M, Kleywegt GJ, Patwardhan A, Sarkans U, Swedlow JR, Brazma A.
2021
doi:10.1101/2021.12.17.473169.
Istrate A, Wang Z, Murshudov GN, Patwardhan A, Kleywegt GJ.
2021
doi:10.1101/2021.12.16.472999.
Wang Z, Patwardhan A, Kleywegt GJ.
2021
doi:10.1101/2021.11.02.466942.
Sarkans U, Chiu W, Collinson L, Darrow MC, Ellenberg J, Grunwald D, Hériché JK, Iudin A, Martins GG, Meehan T, Narayan K, Patwardhan A, Russell MRG, Saibil HR, Strambio-De-Castillia C, Swedlow JR, Tischer C, Uhlmann V, Verkade P, Barlow M, Bayraktar O, Birney E, Catavitello C, Cawthorne C, Wagner-Conrad S, Duke E, Paul-Gilloteaux P, Gustin E, Harkiolaki M, Kankaanpää P, Lemberger T, McEntyre J, Moore J, Nicholls AW, Onami S, Parkinson H, Parsons M, Romanchikova M, Sofroniew N, Swoger J, Utz N, Voortman LM, Wong F, Zhang P, Kleywegt GJ, Brazma A.
Nat Methods,
2021
doi:10.1038/s41592-021-01166-8.
Lawson CL, Kryshtafovych A, Adams PD, Afonine PV, Baker ML, Barad BA, Bond P, Burnley T, Cao R, Cheng J, Chojnowski G, Cowtan K, Dill KA, DiMaio F, Farrell DP, Fraser JS, Herzik MA, Hoh SW, Hou J, Hung LW, Igaev M, Joseph AP, Kihara D, Kumar D, Mittal S, Monastyrskyy B, Olek M, Palmer CM, Patwardhan A, Perez A, Pfab J, Pintilie GD, Richardson JS, Rosenthal PB, Sarkar D, Schäfer LU, Schmid MF, Schröder GF, Shekhar M, Si D, Singharoy A, Terashi G, Terwilliger TC, Vaiana A, Wang L, Wang Z, Wankowicz SA, Williams CJ, Winn M, Wu T, Yu X, Zhang K, Berman HM, Chiu W.
Nat Methods,
2021
doi:10.1038/s41592-020-01051-w.
Lawson CL, Kryshtafovych A, Adams PD, Afonine PV, Baker ML, Barad BA, Bond P, Burnley T, Cao R, Cheng J, Chojnowski G, Cowtan K, Dill KA, DiMaio F, Farrell DP, Fraser JS, Herzik MA, Hoh SW, Hou J, Hung L, Igaev M, Joseph AP, Kihara D, Kumar D, Mittal S, Monastyrskyy B, Olek M, Palmer CM, Patwardhan A, Perez A, Pfab J, Pintilie GD, Richardson JS, Rosenthal PB, Sarkar D, Schäfer LU, Schmid MF, Schröder GF, Shekhar M, Si D, Singharoy A, Terashi G, Terwilliger TC, Vaiana A, Wang L, Wang Z, Wankowicz SA, Williams CJ, Winn M, Wu T, Yu X, Zhang K, Berman HM, Chiu W.
2020
doi:10.1101/2020.06.12.147033.
Joseph AP, Lagerstedt I, Jakobi A, Burnley T, Patwardhan A, Topf M, Winn M.
J Chem Inf Model,
2020
doi:10.1021/acs.jcim.9b01103.
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Nucleic Acids Res,
2019
doi:10.1093/nar/gky949.
Ellenberg J, Swedlow JR, Barlow M, Cook CE, Sarkans U, Patwardhan A, Brazma A, Birney E.
Nat Methods,
2018
doi:10.1038/s41592-018-0195-8.
Heymann JB, Marabini R, Kazemi M, Sorzano COS, Holmdahl M, Mendez JH, Stagg SM, Jonic S, Palovcak E, Armache JP, Zhao J, Cheng Y, Pintilie G, Chiu W, Patwardhan A, Carazo JM.
J Struct Biol,
2018
doi:10.1016/j.jsb.2018.08.010.
Abbott S, Iudin A, Korir PK, Somasundharam S, Patwardhan A.
Curr Protoc Bioinformatics,
2018
doi:10.1002/cpbi.48.
Kleywegt GJ, Velankar S, Patwardhan A.
FEBS Lett,
2018
doi:10.1002/1873-3468.13086.
Young JY, Westbrook JD, Feng Z, Peisach E, Persikova I, Sala R, Sen S, Berrisford JM, Swaminathan GJ, Oldfield TJ, Gutmanas A, Igarashi R, Armstrong DR, Baskaran K, Chen L, Chen M, Clark AR, Di Costanzo L, Dimitropoulos D, Gao G, Ghosh S, Gore S, Guranovic V, Hendrickx PMS, Hudson BP, Ikegawa Y, Kengaku Y, Lawson CL, Liang Y, Mak L, Mukhopadhyay A, Narayanan B, Nishiyama K, Patwardhan A, Sahni G, Sanz-García E, Sato J, Sekharan MR, Shao C, Smart OS, Tan L, van Ginkel G, Yang H, Zhuravleva MA, Markley JL, Nakamura H, Kurisu G, Kleywegt GJ, Velankar S, Berman HM, Burley SK.
Database (Oxford),
2018
doi:10.1093/database/bay002.
Gore S, Sanz García E, Hendrickx PMS, Gutmanas A, Westbrook JD, Yang H, Feng Z, Baskaran K, Berrisford JM, Hudson BP, Ikegawa Y, Kobayashi N, Lawson CL, Mading S, Mak L, Mukhopadhyay A, Oldfield TJ, Patwardhan A, Peisach E, Sahni G, Sekharan MR, Sen S, Shao C, Smart OS, Ulrich EL, Yamashita R, Quesada M, Young JY, Nakamura H, Markley JL, Berman HM, Burley SK, Velankar S, Kleywegt GJ.
Structure,
2017
doi:10.1016/j.str.2017.10.009.
Patwardhan A, Brandt R, Butcher SJ, Collinson L, Gault D, Grünewald K, Hecksel C, Huiskonen JT, Iudin A, Jones ML, Korir PK, Koster AJ, Lagerstedt I, Lawson CL, Mastronarde D, McCormick M, Parkinson H, Rosenthal PB, Saalfeld S, Saibil HR, Sarntivijai S, Solanes Valero I, Subramaniam S, Swedlow JR, Tudose I, Winn M, Kleywegt GJ.
Elife,
2017
doi:10.7554/elife.25835.
Patwardhan A.
Acta Crystallogr D Struct Biol,
2017
doi:10.1107/s2059798317004181.
Joseph AP, Lagerstedt I, Patwardhan A, Topf M, Winn M.
J Struct Biol,
2017
doi:10.1016/j.jsb.2017.05.007.
Iudin A, Patwardhan A.
2017
doi:10.6019/tol.empiar-qt.2017.00001.1.
Young JY, Westbrook JD, Feng Z, Sala R, Peisach E, Oldfield TJ, Sen S, Gutmanas A, Armstrong DR, Berrisford JM, Chen L, Chen M, Di Costanzo L, Dimitropoulos D, Gao G, Ghosh S, Gore S, Guranovic V, Hendrickx PMS, Hudson BP, Igarashi R, Ikegawa Y, Kobayashi N, Lawson CL, Liang Y, Mading S, Mak L, Mir MS, Mukhopadhyay A, Patwardhan A, Persikova I, Rinaldi L, Sanz-Garcia E, Sekharan MR, Shao C, Swaminathan GJ, Tan L, Ulrich EL, van Ginkel G, Yamashita R, Yang H, Zhuravleva MA, Quesada M, Kleywegt GJ, Berman HM, Markley JL, Nakamura H, Velankar S, Burley SK.
Structure,
2017
doi:10.1016/j.str.2017.01.004.
Carroni M, De March M, Medagli B, Krastanova I, Taylor IA, Amenitsch H, Araki H, Pisani FM, Patwardhan A, Onesti S.
Sci Rep,
2017
doi:10.1038/srep40188.
Patwardhan A, Lawson CL.
Methods Enzymol,
2016
doi:10.1016/bs.mie.2016.04.015.
Iudin A, Korir PK, Salavert-Torres J, Kleywegt GJ, Patwardhan A.
Nat Methods,
2016
doi:10.1038/nmeth.3806.
Salavert-Torres J, Iudin A, Lagerstedt I, Sanz-García E, Kleywegt GJ, Patwardhan A.
J Struct Biol,
2016
doi:10.1016/j.jsb.2016.02.012.
Marabini R, Ludtke SJ, Murray SC, Chiu W, de la Rosa-Trevín JM, Patwardhan A, Heymann JB, Carazo JM.
J Struct Biol,
2016
doi:10.1016/j.jsb.2016.02.008.
Lawson CL, Patwardhan A, Baker ML, Hryc C, Garcia ES, Hudson BP, Lagerstedt I, Ludtke SJ, Pintilie G, Sala R, Westbrook JD, Berman HM, Kleywegt GJ, Chiu W.
Nucleic Acids Res,
2016
doi:10.1093/nar/gkv1126.
Velankar S, van Ginkel G, Alhroub Y, Battle GM, Berrisford JM, Conroy MJ, Dana JM, Gore SP, Gutmanas A, Haslam P, Hendrickx PM, Lagerstedt I, Mir S, Fernandez Montecelo MA, Mukhopadhyay A, Oldfield TJ, Patwardhan A, Sanz-García E, Sen S, Slowley RA, Wainwright ME, Deshpande MS, Iudin A, Sahni G, Salavert Torres J, Hirshberg M, Mak L, Nadzirin N, Armstrong DR, Clark AR, Smart OS, Korir PK, Kleywegt GJ.
Nucleic Acids Res,
2016
doi:10.1093/nar/gkv1047.
Sali A, Berman HM, Schwede T, Trewhella J, Kleywegt G, Burley SK, Markley J, Nakamura H, Adams P, Bonvin AM, Chiu W, Peraro MD, Di Maio F, Ferrin TE, Grünewald K, Gutmanas A, Henderson R, Hummer G, Iwasaki K, Johnson G, Lawson CL, Meiler J, Marti-Renom MA, Montelione GT, Nilges M, Nussinov R, Patwardhan A, Rappsilber J, Read RJ, Saibil H, Schröder GF, Schwieters CD, Seidel CA, Svergun D, Topf M, Ulrich EL, Velankar S, Westbrook JD.
Structure,
2015
doi:10.1016/j.str.2015.05.013.
Wood C, Burnley T, Patwardhan A, Scheres S, Topf M, Roseman A, Winn M.
Acta Crystallogr D Biol Crystallogr,
2015
doi:10.1107/s1399004714018070.
Patwardhan A, Ashton A, Brandt R, Butcher S, Carzaniga R, Chiu W, Collinson L, Doux P, Duke E, Ellisman MH, Franken E, Grünewald K, Heriche JK, Koster A, Kühlbrandt W, Lagerstedt I, Larabell C, Lawson CL, Saibil HR, Sanz-García E, Subramaniam S, Verkade P, Swedlow JR, Kleywegt GJ.
Nat Struct Mol Biol,
2014
doi:10.1038/nsmb.2897.
Gutmanas A, Alhroub Y, Battle GM, Berrisford JM, Bochet E, Conroy MJ, Dana JM, Fernandez Montecelo MA, van Ginkel G, Gore SP, Haslam P, Haslam P, Hatherley R, Hendrickx PM, Hirshberg M, Lagerstedt I, Mir S, Mukhopadhyay A, Oldfield TJ, Patwardhan A, Rinaldi L, Sahni G, Sanz-García E, Sanz-García E, Sen S, Slowley RA, Velankar S, Wainwright ME, Kleywegt GJ.
Nucleic Acids Res,
2014
doi:10.1093/nar/gkt1180.
Catherine Lawson, Ardan Patwardhan, Grigore D Pintilie, Eduardo Sanz Garcia, Ingvar Lagerstedt, Matthew L Baker, Raul Sala, Steven J Ludtke, Helen M Berman, Gerard Kleywegt, Wah Chiu.
Biophys J,
2013
doi:10.1016/j.bpj.2012.11.1950.
Lagerstedt I, Moore WJ, Patwardhan A, Sanz-García E, Best C, Swedlow JR, Kleywegt GJ.
J Struct Biol,
2013
doi:10.1016/j.jsb.2013.09.021.
Gutmanas A, Oldfield TJ, Patwardhan A, Sen S, Velankar S, Kleywegt GJ.
Acta Crystallogr D Biol Crystallogr,
2013
doi:10.1107/s0907444913001157.
Milne JL, Borgnia MJ, Bartesaghi A, Tran EE, Earl LA, Schauder DM, Lengyel J, Pierson J, Patwardhan A, Subramaniam S.
FEBS J,
2013
doi:10.1111/febs.12078.
Patwardhan A, Carazo JM, Carragher B, Henderson R, Heymann JB, Hill E, Jensen GJ, Lagerstedt I, Lawson CL, Ludtke SJ, Mastronarde D, Moore WJ, Roseman A, Rosenthal P, Sorzano CO, Sanz-García E, Scheres SH, Subramaniam S, Westbrook J, Winn M, Swedlow JR, Kleywegt GJ.
Nat Struct Mol Biol,
2012
doi:10.1038/nsmb.2426.
Allan C, Burel JM, Moore J, Blackburn C, Linkert M, Loynton S, Macdonald D, Moore WJ, Neves C, Patterson A, Porter M, Tarkowska A, Loranger B, Avondo J, Lagerstedt I, Lianas L, Leo S, Hands K, Hay RT, Patwardhan A, Best C, Kleywegt GJ, Zanetti G, Swedlow JR.
Nat Methods,
2012
doi:10.1038/nmeth.1896.
Velankar S, Alhroub Y, Best C, Caboche S, Conroy MJ, Dana JM, Fernandez Montecelo MA, van Ginkel G, Golovin A, Gore SP, Gutmanas A, Haslam P, Hendrickx PM, Heuson E, Hirshberg M, John M, Lagerstedt I, Mir S, Newman LE, Oldfield TJ, Patwardhan A, Rinaldi L, Sahni G, Sanz-García E, Sen S, Slowley R, Suarez-Uruena A, Swaminathan GJ, Symmons MF, Vranken WF, Wainwright M, Kleywegt GJ.
Nucleic Acids Res,
2012
doi:10.1093/nar/gkr998.
Taylor JD, Zhou Y, Salgado PS, Patwardhan A, McGuffie M, Pape T, Grabe G, Ashman E, Constable SC, Simpson PJ, Lee WC, Cota E, Chapman MR, Matthews SJ.
Structure,
2011
doi:10.1016/j.str.2011.05.015.
Jenkinson ER, Costa A, Leech AP, Patwardhan A, Onesti S, Chong JP.
J Biol Chem,
2009
doi:10.1074/jbc.m806973200.
Costa A, van Duinen G, Medagli B, Chong J, Sakakibara N, Kelman Z, Nair SK, Patwardhan A, Onesti S.
EMBO J,
2008
doi:10.1038/emboj.2008.135.
Costa A, Patwardhan A.
J Mol Biol,
2008
doi:10.1016/j.jmb.2008.02.054.
Muzzolini L, Beuron F, Patwardhan A, Popuri V, Cui S, Niccolini B, Rappas M, Freemont PS, Vindigni A.
PLoS Biol,
2007
doi:10.1371/journal.pbio.0050020.
Costa A, Pape T, van Heel M, Brick P, Patwardhan A, Onesti S.
Nucleic Acids Res,
2006
doi:10.1093/nar/gkl708.
Costa A, Pape T, van Heel M, Brick P, Patwardhan A, Onesti S.
J Struct Biol,
2006
doi:10.1016/j.jsb.2006.04.001.
van Duinen G, van Heel M, Patwardhan A.
Opt Express,
2005
doi:10.1364/opex.13.009085.
Ray P, Hall RJ, Finn RD, Chen S, Patwardhan A, Buck M, van Heel M.
J Mol Biol,
2005
doi:10.1016/j.jmb.2005.09.057.
Patwardhan A, Paul D, Al-Khayat HA, Morris EP.
J Mol Biol,
2004
doi:10.1016/j.jmb.2004.09.068.
Paul D, Patwardhan A, Squire JM, Squire JM, Morris EP.
J Struct Biol,
2004
doi:10.1016/j.jsb.2004.05.004.
Hall RJ, Patwardhan A.
J Struct Biol,
2004
doi:10.1016/j.jsb.2003.10.024.
Patwardhan A.
J Opt Soc Am A Opt Image Sci Vis,
2003
doi:10.1364/josaa.20.001210.
van Heel M, Gowen B, Matadeen R, Orlova EV, Finn R, Pape T, Cohen D, Stark H, Schmidt R, Schatz M, Patwardhan A.
Q Rev Biophys,
2000
doi:10.1017/s0033583500003644.
Matadeen R, Patwardhan A, Gowen B, Orlova EV, Pape T, Cuff M, Mueller F, Brimacombe R, van Heel M.
Structure,
1999
doi:10.1016/s0969-2126(00)88348-3.
Régnier M, Patwardhan A, Scheynius A, Schmidt R.
Med Biol Eng Comput,
1998
doi:10.1007/bf02518889.
Andersson T, Patwardhan A, Emilson A, Carlsson K, Scheynius A.
Arch Dermatol Res,
1998
doi:10.1007/s004030050372.
Helm PJ, Patwardhan A, Manders EM.
Cell Calcium,
1997
doi:10.1016/s0143-4160(97)90067-1.
Carlsson K, Patwardhan A, Poullain JC, Gerentes I.
J Mal Vasc,
1996
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Patwardhan A, Carlsson K, Poullain JC, Taccoen A, Gerentes I.
J Cardiovasc Surg (Torino),
1995
doi:.