Annotating Macromolecular Complexes in the Protein Data Bank: Improving the FAIRness of Structure Data.

Appasamy SD, Berrisford J, Gaborova R, Nair S, Anyango S, Grudinin S, Deshpande M, Armstrong D, Pidruchna I, Ellaway JIJ, Leines GD, Gupta D, Harrus D, Varadi M, Velankar S.

Sci Data, 2023

doi:10.1038/s41597-023-02778-9.

Annotating Macromolecular Complexes in the Protein Data Bank: Improving the FAIRness of Structure Data

Appasamy SD, Berrisford J, Gaborova R, Nair S, Anyango S, Grudinin S, Deshpande M, Armstrong D, Pidruchna I, Ellaway JIJ, Leines GD, Gupta D, Harrus D, Varadi M, Velankar S.

2023

doi:10.1101/2023.05.15.540692.

PDBe and PDBe-KB: Providing high-quality, up-to-date and integrated resources of macromolecular structures to support basic and applied research and education.

Varadi M, Anyango S, Appasamy SD, Armstrong D, Bage M, Berrisford J, Choudhary P, Bertoni D, Deshpande M, Leines GD, Ellaway J, Evans G, Gaborova R, Gupta D, Gutmanas A, Harrus D, Kleywegt GJ, Bueno WM, Nadzirin N, Nair S, Pravda L, Afonso MQL, Sehnal D, Tanweer A, Tolchard J, Abrams C, Dunlop R, Velankar S.

Protein Sci, 2022

doi:10.1002/pro.4439.

Regulation of Glycine Cleavage and Detoxification by a Highly Conserved Glycine Riboswitch in Burkholderia spp.

Munyati-Othman N, Appasamy SD, Damiri N, Emrizal R, Alipiah NM, Ramlan EI, Firdaus-Raih M.

Curr Microbiol, 2021

doi:10.1007/s00284-021-02550-5.

InterRNA: a database of base interactions in RNA structures.

Appasamy SD, Hamdani HY, Ramlan EI, Firdaus-Raih M.

Nucleic Acids Res, 2016

doi:10.1093/nar/gkv1186.

Comparative sequence and structure analysis reveals the conservation and diversity of nucleotide positions and their associated tertiary interactions in the riboswitches.

Appasamy SD, Ramlan EI, Firdaus-Raih M.

PLoS One, 2013

doi:10.1371/journal.pone.0073984.

NASSAM: a server to search for and annotate tertiary interactions and motifs in three-dimensional structures of complex RNA molecules.

Hamdani HY, Appasamy SD, Willett P, Artymiuk PJ, Firdaus-Raih M.

Nucleic Acids Res, 2012

doi:10.1093/nar/gks513.