Lipid network and moiety analysis for revealing enzymatic dysregulation and mechanistic alterations from lipidomics data.

Rose TD, Köhler N, Falk L, Klischat L, Lazareva OE, Pauling JK

Briefings in bioinformatics, 2023

doi:10.1093/bib/bbac572.

Kupffer cells are protective in alcoholic steatosis.

Kohler N, Horing M, Czepukojc B, Rose TD, Buechler C, Krohler T, Haybaeck J, Liebisch G, Pauling JK, Kessler SM, Kiemer AK

Molecular basis of disease BBA. Molecular basis of disease, 2022

doi:10.1016/j.bbadis.2022.166398.

MoSBi: automated signature mining for molecular stratification and subtyping.

Rose TD, Bechtler T, Ciora OA, Le KAL, Molnar F, Kohler N, Baumbach J, Rottger R, Pauling JK

Proceedings of the National Academy of Sciences of the United States of America., 2022

doi:10.1073/pnas.2118210119.

Nonalcoholic fatty liver disease stratification by liver lipidomics.

Vvedenskaya O, Rose TD, Knittelfelder O, Palladini A, Wodke JAH, Schuhmann K, Ackerman JM, Wang YT, Has C, Brosch M, Thangapandi VR, Buch S, Zullig T, Hartler J, Kofeler HC, Rocken C, Coskun U, Klipp E, von Schoenfels W, Gross J, Schafmayer C, Hampe J, Pauling JK, Shevchenko A

Journal of lipid research., 2021

doi:10.1016/j.jlr.2021.100104.

Investigating global lipidome alterations with the Lipid Network Explorer.

Kohler N, Rose TD, Falk L, Pauling JK

Metabolites, 2021

doi:10.3390/metabo11080488.

Lessons from the COVID-19 pandemic for advancing computational drug repurposing strategies

Galindez G, Matschinske J, Rose TD, Sadegh S, Salgado-Albarran M, Spath J, Baumbach J, Pauling JK

Nature computational science., 2021

doi:10.1038/s43588-020-00007-6.

Exploring the SARS-CoV-2 virus-host-drug interactome for drug repurposing.

Sadegh S, Matschinske J, Blumenthal DB, Galindez G, Kacprowski T, List M, Nasirigerdeh R, Oubounyt M, Pichlmair A, Rose TD, Salgado-Albarran M, Spath J, Stukalov A, Wenke NK, Yuan K, Pauling JK, Baumbach J

Nature Communications, 2020

doi:10.1038/s41467-020-17189-2.

FluxVisualizer, a software to visualize fluxes through metabolic networks.

Rose TD, Mazat JP

Processes, 2018

doi:10.3390/pr6050039.