Overview

This conference will take place at EMBL Heidelberg. Proof of COVID-19 vaccination or recovery is required for on-site attendance. Please see EMBL’s COVID-19 safety policy for on-site events. 

The 4th EMBL Partnership Conference will be held in Heidelberg from 21 – 23 September 2022. The conference brings together EMBL and its partner institutes to enable exchange of expertise and build new collaborations and research networks. The programme features 3 parallel sessions on the topics of 1) Stem cells & Development, 2) Genomics & Disease, and 3) Neurobiology, and a joint session on Emerging technologies. The conference is open to current members of staff at EMBL and EMBL Partner Institutes.

Topics

Neurobiology
Stem cells and development
Genomics and disease
Emerging technologies

Keynote lecture

From Biobanking to Precision Medicine

Prof. Andres Metspalu, M.D., Ph.D.

Estonian Genome Center, Institute of Genomics, Head of the Estonian biobank, University of Tartu

Prof. Andres Metspalu, (MD 1976, PhD 1979) Head of the Estonian Biobank, Institute of Genomics, University of Tartu.

He was a postdoc at Colombia University (NY) and Yale University in 1981-1982. His main scientific interests are genome analysis technology, human genetics, genomics of complex diseases and population-based biobanks and application of the precision medicine with personal prevention in health care. He was the founder and director of the Estonian Genome Center from 20207-2018 and first director of the Institute of Genomics, University of Tartu. He was visiting fellow in 1985 EMBL (FEBBS) and 1987 MPI West Berlin (EMBO). In 1993-1994 at BCM, Houston, as a visiting faculty and year 2000 at IARC, Lyon, France as a recipient of the International VSS Award and in 2012 sabbatical at University of Lausanne. From 1996 to 2008 A. Metspalu was also the head and founder of the MD Center of the Tartu University Hospital. Metspalu is the past (2006) president of the European Society of the Human Genetics.

In 2010 he was elected to the Estonian Academy of Sciences. His H-index is 112. He is serving in several international committees (Board member of Mission for Cancer in Horizon Europe and WG leader  and CG member in 1M+ Genome Initiative of EU, Board of EIT Health Scandinavia, Nordic Society of Human Genetics and Precision Medicine, member of the board of EATRIS) and has received among other awards and honors the Order of the Estonian Red Cross 3rd Class and L’Ordre des Palmes Academiques from the Republic of France. From 2010, he is Doctor Honoris Causa of Vilnius University.

Organising committees

Steering committee


Neurobiology


Stem cells and development


Genomics and disease

Speakers

Stem cells and development

Emilie Abby

Wellcome Sanger Institute

UK

Kerim Anlas

EMBL Barcelona

Spain

Sergi Aranda

Centre for Genomic Regulation (CRG)

Spain

Camilla Autorino

EMBL Heidelberg

Germany

Muwan Chen

DANDRITE

Denmark

Lionel Christiaen

Sars International Centre for Molecular Marine Biology

Norway

Andras Dinnyés

Hungarian Centre of Excellence for Molecular Medicine (HCEMM)

Hungary

Alba Diz-Munoz

EMBL Heidelberg

Germany

Matilde Galli

Hubrecht Institute

Netherlands

Kathrin Garschall

Sars International Centre for Molecular Marine Biology

Norway

Jan Manent

EMBL Australia

Australia

Marina Matsumiya

EMBL Barcelona

Spain

Hidenobu Miyazawa

EMBL Heidelberg

Germany

Victoria Neguembor

Centre for Genomic Regulation (CRG)

Spain

Phong Nguyen

Hubrecht Institute

Netherlands

Vibha Patil

EMBL Heidelberg

Germany

Bernhard Payer

Centre for Genomic Regulation (CRG)

Spain

Bárbara Pernaute

Centre for Genomic Regulation (CRG)

Spain

Avnika Ruparelia

EMBL Australia

Australia

Gregoire Stik

Centre for Genomic Regulation (CRG)

Spain

Barry Thompson

EMBL Australia

Australia

Bart Weijts

Hubrecht Institute

Netherlands

Matt Young

Wellcome Sanger Institute

UK

Neurobiology

Hiroki Asari

EMBL Heidelberg

Germany

Bogna Badyra

Braincity

Poland

Nancy Banono

NCMM

Norway

Omer Bayraktar

Wellcome Sanger Institute

UK

Anna Beroun

Braincity

Poland

Juan Carlos Boffi

EMBL Rome

Italy

Lea Danics

Hungarian Centre of Excellence for Molecular Medicine (HCEMM)

Hungary

Mathias Eymery

EMBL Grenoble

France

Michael Habeck

DANDRITE

Denmark

Irene Ayuso Jimeno

EMBL Rome

Italy

Helena Kilpinen

Institute for Molecular Medicine Finland (FIMM)

Finland

Duda Kvitsiani

DANDRITE

Denmark

Derrick Lau

EMBL Australia

Australia

Izabela Lepiarz-Raba

Braincity

Poland

Lina Malinauskaite

Vilnius University Life Sciences Center (VU LSC)

Lithuania

Guillermo Martinez Ara

EMBL Barcelona

Spain

Lindsay McGregor

ESRF

France

Noëmie Mermet-Joret

DANDRITE

Denmark

Constantin Pape

EMBL Heidelberg

Germany

Annalisa Pastore

ESRF

France

Mariia Sachkova

Sars International Centre for Molecular Marine Biology

Norway

Katrin Schrenk

Molecular Medicine Partnership Unit (MMPU)

Germany

Genomics and disease

Renée Beekmann

Centre for Genomic Regulation (CRG)

Spain

Tatiana Belova

Centre for Molecular Medicine Norway (NCMM)

Norway

Roza Berhanu Lemma

Centre for Molecular Medicine Norway (NCMM)

Norway

Annique Claringbould

EMBL Heidelberg

Germany

Marco Cosenza

EMBL Heidelberg

Germany

Sascha Dietrich

Molecular Medicine Partnership Unit (MMPU)

Germany

Eduardo Eyras

EMBL Australia

Australia

Liangru Fei

Centre for Molecular Medicine Norway (NCMM)

Norway

John Hawkins

EMBL Heidelberg

Germany

Carla Jones

Wellcome Sanger Institute

UK

Marieke Kuijjer

Centre for Molecular Medicine Norway (NCMM)

Norway

Ugne Kuliesiute

Vilnius University Life Sciences Center (VU LSC)

Lithuania

Orsolya Liska

Hungarian Centre of Excellence for Molecular Medicine (HCEMM)

Hungary

Aoxing Liu

Institute for Molecular Medicine Finland (FIMM)

Finland

Dewi Moonen

EMBL Heidelberg

Germany

Patrick Pausch

Vilnius University Life Sciences Center (VU LSC)

Lithuania

Karolina Pircs

Hungarian Centre of Excellence for Molecular Medicine (HCEMM)

Hungary

Samuli Ripatti

Institute for Molecular Medicine Finland (FIMM)

Finland

Atin Sharma

Molecular Infection Medicine Sweden (MIMS)

Sweden

Harald Vöhringer

Molecular Medicine Partnership Unit (MMPU)

Germany

Umut Yildiz

EMBL Heidelberg

Germany

Maria Zimmermann

EMBL Heidelberg

Germany

Emerging technologies

Lars-Anders Carlson

Molecular Infection Medicine Sweden (MIMS)

Sweden

Arnaud Krebs

EMBL Heidelberg

Germany

Anna Kreshuk

EMBL Heidelberg

Germany

Linas Mazutis

Vilnius University Life Sciences Center (VU LSC)

Lithuania

Lassi Paavolainen

Institute for Molecular Medicine Finland (FIMM)

Finland

Sinem Saka

EMBL Heidelberg

Germany

Melanie Schnieder

EMBL-EBI

UK

Virginijus Šikšnys

Vilnius University Life Sciences Center (VU LSC)

Lithuania

Marzena Stefaniuk

Braincity

Poland

Programme

Stem cells and development
Stem cells and development – Day 1, 21 September 2022
Time
(Europe/Berlin)
Session/SpeakerLocation
11:00 – 12:30Joint registration and light lunchATC Foyer
12:30 – 13:00Opening remarks (joint session)
Edith Heard – EMBL
ATC Auditorium
13:00 – 14:00Keynote: From Biobanking to Precision Medicine
Andres Metspalu – Estonian Genome Center, Institute of Genomics, Head of the Estonian biobank, University of Tartu, Estonia
ATC Auditorium
14:00 – 14:10Break – change conference rooms
Session 1: Developmental and cellular systems
Session Chair: Phil Jones – Welcome Sanger Institute, UK
Small Operon
14:10 – 14:30Cell surface mechanics gate cell differentiation
Presented by Martin Bergert on behalf of Alba Diz Munoz – EMBL Heidelberg, Germany
14:30 – 14:45Chromatin dynamics in stem cells
Sergio Aranda – CRG, Spain
14:45 – 15:00Dynamics of Anteroposterior Symmetry Breaking in Embryonic Stem Cell Aggregates
Kerim Anlas – EMBL Barcelona, Spain
15:00 – 15:30Coffee Break and Meet the speakers
in ATC & Operon
ATC Foyer and Operon Foyer
15:30 – 15:50Developmental and Cellular Systems in a Simple Marine Chordate
Lionel Christiaen – Sars, Norway
15:50 – 16:05Muscle stem cell dynamics in growth and disease – lessons from zebrafish
Avnika Ruparelia – EMBL Australia, Australia
16:05 – 16:20The nutritional regulation of body size in the sea anemone Nematostella
Kathrin Garschall – Sars, Norway
16:20 – 16:35Uncovering glycolytic flux control of embryonic timing and patterning
Hidenobu Miyazawa – EMBL Heidelberg, Germany
16:35 – 16:45Break – change conference rooms
16:45 – 17:15Flash talks (joint session)
Audrey Andersen-Civil – #80
Gantugs Atarsaikhan – #81
Ping-Han Hsieh – #103
Máté Manczinger – #125
Pau Puigdevall Costa – #141
Himanshu Sharma – #157
Adithi Sundaresh – #161
ATC Auditorium
17:15 – 19:15Poster Session 1 (odd) with beer and snacksATC Helix A & B
Stem cells and development – Day 2, 22 September 2022
Time
(Europe/Berlin)
Session/SpeakerLocation
Session 2: Emerging technologies (joint session)
Session Chair: Janna Saarela – NCMM, Norway
ATC Auditorium
09:00 – 09:20A DNA toolbox for spatial biology from imaging to sequencing
Sinem Saka – EMBL Heidelberg, Germany
09:20 – 09:35Whole-brain imaging using light-sheet microscope to study brain plasticity
Marzena Stefaniuk – Braincity, Poland
09:35 – 09:50Uncovering patterns in cancer cells with visual representation learning
Lassi Paavolainen – FIMM, Finland
09:50 – 10:10Understanding gene regulation using single molecule genomics
Arnaud Krebs – EMBL Heidelberg, Germany
10:10 – 10:30Homestyling from hell: Using cryo-electron tomography to understand how viruses rearrange the cellular interior
Lars-Anders Carlson – MIMS, Sweden
10:30 – 11:00Coffee Break and Meet the speakers
in ATC
ATC Foyer
11:00 – 11:15Big data for biology and health
Melanie Schneider – EMBL-EBI, UK
11:15 – 11:35Discovery and characterization of novel nucleases for genome editing applications
Virginijus Šikšnys – VU LSC, Lithuania
11:35 – 11:50Deciphering biological heterogeneity using droplet microfluidics technology
Linas Mazutis – VU LSC, Lithuania
11:50 – 12:10Machine learning for image analysis
Anna Kreshuk – EMBL Heidelberg, Germany
12:10 – 13:30Joint lunchATC Foyer
Session 3: Cell to organ development
Session Chair: Edwina McGlinn – EMBL Australia, Australia
Small Operon
13:30 – 13:50Switching cycles: Transitioning from canonical to non-canonical cell cycles during development
Matilde Galli – Hubrecht Institute, Netherlands
13:50 – 14:05Post-transcriptional control of differentiation in the early mammalian embryo
Bárbara Pernaute – CRG, Spain
14:05 – 14:20Mechanisms of cardiomyocyte maturation during regeneration
Phong Nguyen – Hubrecht Institute, Netherlands
14:20 – 14:40Transcriptional signals of dedifferentiation in human cancers
Matt Young – Welcome Sanger Institute, UK
14:40 – 14:55Role of CTCF in immune cell fate conversion and inflammatory response
Gregoire Stik – CRG, Spain
14:55 – 15:30Coffee Break and Meet the speakers
in ATC & Operon
ATC Foyer and Operon Foyer
15:30 – 15:50Tissue material properties and their role in embryonic patterning
Nicoletta Petridou – EMBL Heidelberg, Germany
15:50 – 16:05The surrogate hematopoietic stem cell niche a tool to understand hematopoietic stem cell expansion
Bart Weijts – Hubrecht Institute, Netherlands
16:05 – 16:20From the top down… patterning and growth along the head-to-tail axis
Jan Manent – EMBL Australia, Australia
16:20 – 16:30Break – change conference rooms
16:30 – 17:00Flash talks (joint session)
Lilian Kisiswa – #92
Sarah E. Hunt – #104
Boldiszár Jójárt – #106
Joyce Man – #124
Poul Henning Jensen – #146
Nadine Tüchler – #168
ATC Auditorium
17:00 – 19:00Poster Session 2 (even) with beer and snacksATC Helix A & B
19:00 – 21:00Conference dinner – BBQEMBL Canteen
Stem cells and development – Day 3, 23 September 2022
Time
(Europe/Berlin)
Session/SpeakerLocation
Session 4: Diseases and cell reprogramming
Session Chair: Jeroen Bakkers – Hubrecht Institute, The Netherlands
Small Operon
09:00 – 09:20Alzheimer disease modelling by hiPSC-derived neurons and microglia like cells
Andras Dinnyés – HCEMM, Hungary
09:20 – 09:35Periodic formation of epithelial somites from human pluripotent stem cells
Marina Matsumiya – EMBL Barcelona, Spain
09:35 – 09:50Unraveling gene folding with nucleosome resolution in pluripotency and differentiation
Victoria Neguembor – CRG, Spain
09:50 – 10:10Epigenetic reprogramming of the X chromosome in the female mammalian germ line
Bernhard Payer – CRG, Spain
10:10 – 10:25Reproducible Organoid Platform for Disease Modeling and Drug Discovery
Muwan Chen – DANDRITE, Denmark
10:25 – 11:00Coffee Break and Meet the speakers
in ATC & Operon
ATC Foyer and Operon Foyer
11:00 – 11:20YAP-TEAD drives immune evasion in squamous cell carcinoma
Barry Thompson – EMBL Australia, Australia
11:20 – 11:35Notch1 mutation drives clonal expansion in normal esophageal epithelium but impairs tumour growth
Emilie Abby – Welcome Sangre Institute, UK
11:35 – 12:00Break – change conference rooms
12:00 – 12:30Closing Remarks and Poster Prize (joint session)ATC Auditorium
Neurobiology
Neurobiology – Day 1, 21 September 2022
Time
(Europe/Berlin)
Session/SpeakerLocation
11:00 – 12:30Joint registration and light lunchATC Foyer
12:30 – 13:00Opening remarks (joint session)
Edith Heard – EMBL
ATC Auditorium
13:00 – 14:00Keynote: From Biobanking to Precision Medicine
Andres Metspalu – Estonian Genome Center, Institute of Genomics, Head of the Estonian biobank, University of Tartu, Estonia
ATC Auditorium
14:00 – 14:30Break – change conference rooms
Session 1: Molecular mechanisms of brain disorders
Session Chair: Ewelina Knapska – Braincity, Poland
Large Operon
14:30 – 14:45Toward better diagnostic of Parkinson’s Disease – putting a number on each α-synuclein aggregates
Derrick Lau – EMBL Australia, Australia
14:45 – 15:00Targeting autotaxin in neurological diseases
Mathias Eymery – EMBL Grenoble, France
15:00 – 15:30Coffee Break and Meet the speakers
in ATC & Operon
ATC Foyer and Operon Foyer
15:30 – 15:50Human iPSC-derived neurons as models for developmental disorders
Helena Kilpinen – FIMM, Finland
15:50 – 16:05Altered proteomic landscape of induced neurons generated from Huntington’s Disease patients’ fibroblasts: autophagy iN focus
Lea Danics – HCEMM, Hungary
16:05 – 16:20Metabolic regulation of amyloid-beta clearance via microglia: implications for Alzheimer’s disease therapeutics
Izabela Lepiarz-Raba – Braincity, Poland
16:20 – 16:35Cacna1c splice site mutation leads to compensatory upregulation of cacna1d and brain disorder phenotypes in zebrafish
Nancy Banono – NCMM, Norway
**This talk is now virtual**
16:35 – 16:45Break – change of conference rooms
16:45 – 17:15Flash talks (joint session)
Audrey Andersen-Civil – #80
Gantugs Atarsaikhan – #81
Ping-Han Hsieh – #103
Máté Manczinger – #125
Pau Puigdevall Costa – #141
Himanshu Sharma – #157
Adithi Sundaresh – #161
ATC Auditorium
17:15 – 19:15Poster Session 1 (odd) with beer and snacksATC Helix A & B
Neurobiology – Day 2, 22 September 2022
Time
(Europe/Berlin)
Session/SpeakerLocation
Session 2: Emerging technologies (joint session)
Session Chair: Janna Saarela – NCMM, Norway
ATC Auditorium
09:00 – 09:20A DNA toolbox for spatial biology from imaging to sequencing
Sinem Saka – EMBL Heidelberg, Germany
09:20 – 09:35Whole-brain imaging using light-sheet microscope to study brain plasticity
Marzena Stefaniuk – Braincity, Poland
09:35 – 09:50Uncovering patterns in cancer cells with visual representation learning
Lassi Paavolainen – FIMM, Finland
09:50 – 10:10Understanding gene regulation using single molecule genomics
Arnaud Krebs – EMBL Heidelberg, Germany
10:10 – 10:30Homestyling from hell: Using cryo-electron tomography to understand how viruses rearrange the cellular interior
Lars-Anders Carlson – MIMS, Sweden
10:30 – 11:00Coffee Break and Meet the speakers
in ATC
ATC Foyer
11:00 – 11:15Big data for biology and health
Melanie Schneider – EMBL-EBI, UK
11:15 – 11:35Discovery and characterization of novel nucleases for genome editing applications
Virginijus Šikšnys – VU LSC, Lithuania
11:35 – 11:50Deciphering biological heterogeneity using droplet microfluidics technology
Linas Mazutis – VU LSC, Lithuania
11:50 – 12:10Machine learning for image analysis
Anna Kreshuk – EMBL Heidelberg, Germany
12:10 – 13:30Joint lunchATC Foyer
Session 3: Assembly and function of neuronal circuits
Session Chair: Santiago Rompani – EMBL Rome, Italy
Large Operon
13:30 – 13:50Anomalous visual processing in the early visual system of autism model mice
Hiroki Asari – EMBL Rome, Italy
**This talk is now virtual**
13:50 – 14:05Elucidating the neuronal population code of sound location at the mammalian inferior colliculus using fast volumetric calcium imaging in vivo
Juan Carlos Boffi – EMBL Rome, Italy
14:05 – 14:20Deep learning enables large-scale neural circuit reconstruction in electron microscopy
Constantin Pape – EMBL Heidelberg, Germany
14:20 – 14:40Time and predictability in mouse anterior cingulate cortex
Duda Kvitsiani – DANDRITE, Denmark
14:40 – 14:55A brainstem neural circuit for instinctive defensive behaviors in mice
Irene Ayuso Jimeno – EMBL Rome, Italy
14:55 – 15:30Coffee Break and Meet the speakers
in ATC & Operon
ATC Foyer and Operon Foyer
15:30 – 15:50Synaptic plasticity of reward-processing pathways
Anna Beroun – Braincity, Poland
15:50 – 16:05Learned vs Innate threats: the amygdala, a city of two tales
Noëmie Mermet-Joret – DANDRITE, Denmark
16:05 – 16:20Human stem cell derived sensory neurons: a new tool to study aspects of sensitization
Katrin Schrenk-Siemens – MMPU, Germany
16:20 – 16:30Break – change of conference rooms
16:30 – 17:00Flash talks (joint session)
Lilian Kisiswa – #92
Sarah E. Hunt – #104
Boldiszár Jójárt – #106
Joyce Man – #124
Poul Henning Jensen – #146
Nadine Tüchler – #168
ATC Auditorium
17:00 – 19:00Poster Session 2 (even) with beer and snacksATC Helix A & B
19:00 – 21:00Conference dinner – BBQEMBL Canteen
Neurobiology – Day 3, 23 September 2022
Time
(Europe/Berlin)
Session/SpeakerLocation
Session 4: Gene expression and structure of the nervous system
Session Chair: Helena Kilpinen – FIMM, Finland
Large Operon
09:00 – 09:20Mapping human tissue architecture with spatial genomics
Omer Bayraktar – Wellcome Sanger Institute, UK
09:20 – 09:35MMP-9 role in induced pluripotent stem cells-derived models of early development of human brain
Bogna Badyra – Braincity, Poland
09:35 – 09:50Disassembling a complex mitochondrial assembly complex
Lindsay McGregor – ESRF, France
09:50 – 10:10RNA in neurodegeneration: A new approach for studying protein condensation by super-resolution microscopy
Annalisa Pastore – ESRF, France
10:10 – 10:25Structure and mechanism of Na,K-ATPase in brain function and disease
Michael Habeck – DANDRITE, Denmark
10:25 – 11:00Coffee Break and Meet the speakers
in ATC & Operon
ATC Foyer and Operon Foyer
11:00 – 11:15Neuropeptide repertoire and 3D anatomy of the ctenophore nervous system shed light on the evolution of neurons
Maria Sachkova – Sars, Norway
11:15 – 11:30Optogenetic manipulation of shape in cerebral organoids
Guillermo Martinez Ara – EMBL Barcelona, Spain
11:30 – 11:50Structural studies of neuronal receptors
Lina Malinauskaite – VU LSC, Lithuania
11:50 – 12:00Break – change of conference rooms
12:00 – 12:30Closing Remarks and Poster Prize (joint session)ATC Auditorium
Genomics and disease
Genomics and disease – Day 1, 21 September 2022
Time
(Europe/Berlin)
Session/Speaker Location
11:00 – 12:30Joint registration and light lunchATC Foyer
12:30 – 13:00Opening remarks (joint session)
Edith Heard – EMBL
ATC Auditorium
13:00 – 14:00Keynote: From Biobanking to Precision Medicine
Andres Metspalu – Estonian Genome Center, Institute of Genomics, Head of the Estonian biobank, University of Tartu, Estonia
ATC Auditorium
14:00 – 14:10Break – change conference rooms
Session 1: Genomic tools and insights
Session Chair: Stephen Knox Jones – VU LSC, Lithuania
ATC Auditorium
14:10 – 14:30Simultaneous identification of m6A and m5C reveals coordinated RNA modification at single-molecule resolution
Eduardo Eyras – EMBL Australia, Australia
14:30 – 14:45Using functional genomics approaches to understand immune diseases
Carla Jones – Welcome Sanger Institute, UK
14:45 – 15:00Identifying perturbation effects in single cells using long read sequencing
John Hawkins – EMBL Heidelberg, Germany
15:00 – 15:30Coffee Break and Meet the speakers
in ATC & Operon
ATC Foyer and Operon Foyer
15:30 – 15:50Understanding early lymphoma formation from a single-cell epigenomics and 3D chromatin perspective
Renée Beekman – CRG, Spain
15:50 – 16:05Identifying disease mechanisms by profiling single cell gene regulation upon CRISPRi perturbation
Annique Claringbould – EMBL Heidelberg, Germany
16:05 – 16:20A genomics approach to establish the role of cell fate in early stages of tumorigenesis
Liangru Fei – NCMM, Norway
16:20 – 16:35Multi-omic profiling and structural variation survey of genetically unstable cells
Marco Cosenza – EMBL Heidelberg, Germany
16:35 – 16:45Break – change of conference rooms
16:45 – 17:15Flash talks (joint session)
Audrey Andersen-Civil – #80
Gantugs Atarsaikhan – #81
Ping-Han Hsieh – #103
Máté Manczinger – #125
Pau Puigdevall Costa – #141
Himanshu Sharma – #157
Adithi Sundaresh – #161
ATC Auditorium
17:15 – 19:15Poster Session 1 (odd) with beer and snacks ATC Helix A & B
Genomics and disease – Day 2, 22 September 2022
Time
(Europe/Berlin)
Session/Speaker Location
Session 2: Emerging technologies (joint session)
Session Chair: Janna Saarela – NCMM, Norway
ATC Auditorium
09:00 – 09:20A DNA toolbox for spatial biology from imaging to sequencing
Sinem Saka – EMBL Heidelberg, Germany
09:20 – 09:35Whole-brain imaging using light-sheet microscope to study brain plasticity
Marzena Stefaniuk – Braincity, Poland
09:35 – 09:50Uncovering patterns in cancer cells with visual representation learning
Lassi Paavolainen – FIMM, Finland
09:50 – 10:10Understanding gene regulation using single molecule genomics
Arnaud Krebs – EMBL Heidelberg, Germany
10:10 – 10:30Homestyling from hell: Using cryo-electron tomography to understand how viruses rearrange the cellular interior
Lars-Anders Carlson – MIMS, Sweden
10:30 – 11:00Coffee Break and Meet the speakers
in ATC
ATC Foyer
11:00 – 11:15Big data for biology and health
Melanie Schneider – EMBL-EBI, UK
11:15 – 11:35Discovery and characterization of novel nucleases for genome editing applications
Virginijus Šikšnys – VU LSC, Lithuania
11:35 – 11:50Deciphering biological heterogeneity using droplet microfluidics technology
Linas Mazutis – VU LSC, Lithuania
11:50 – 12:10Machine learning for image analysis
Anna Kreshuk – EMBL Heidelberg, Germany
12:10 – 13:30Joint lunchATC Foyer
Session 3: Scrutinizing complex diseases and phenotypes
Session Chair: Christoph W. Sensen – HCEMM, Hungary
ATC Auditorium
13:30 – 13:50Direct neuronal conversion: New possibilities to model late onset neurodegenerative diseases
Presented by Lea Danics on behalf of Karolina Pircs – HCEMM, Hungary
13:50 – 14:05Functional dissection of schizophrenia risk genes using single-cell CRISPR screens
Umut Yildiz – EMBL Heidelberg, Germany
14:05 – 14:20The role of cell-surface sialic acid in the neuropathologies of human brain
Ugne Kuliesiute – VU LSC, Lithuania
14:20 – 14:40Disentangling gut microbiome contributions to disease and treatment response
Maria Zimmermann – EMBL Heidelberg, Germany
14:40 – 14:55From tools to candidates: Turning up the notch on discovery of fitness factors in an enteropathogen
Atin Sharma – MIMS, Sweden
14:55 – 15:30Coffee Break and Meet the speakers
in ATC & Operon
ATC Foyer and Operon Foyer
15:30 – 15:50FinnGen: Unique genetic insights from combining isolated population and national health register data
Samuli Ripatti – FIMM, Finland
15:50 – 16:05Investigating the tumor microenvironment of B cell lymphomas using CITE-seq and CODEX
Harald Vöhringer – MMPU, Germany
16:05 – 16:20Evolutionary conservation of the metabolome and its links to human diseases
Orsolya Liska – HCEMM, Hungary
16:20 – 16:30Break – change of conference rooms
16:30 – 17:00Flash talks (joint session)
Lilian Kisiswa – #92
Sarah E. Hunt – #104
Boldiszár Jójárt – #106
Joyce Man – #124
Poul Henning Jensen – #146
Nadine Tüchler – #168
ATC Auditorium
17:00 – 19:00Poster Session 2 (even) with beer and snacks ATC Helix A & B
19:00 – 21:00Conference dinner – BBQEMBL Canteen
Genomics and disease – Day 3, 23 September 2022
Time
(Europe/Berlin)
Session/Speaker Location
Session 4: Genomics of cancer and immunity
Session Chair: Judith Zaugg – EMBL Heidelberg, Germany
ATC Auditorium
09:00 – 09:20Modeling regulatory network rewiring in cancer
Marieke Kuijjer – NCMM, Norway
09:20 – 09:35Genetic determinants of mosaic loss of the X chromosome in peripheral leukocytes of 900k women from 9 biobanks
Aoxing Liu – FIMM, Finland
09:35 – 09:50Linking non-coding immune disease variants to T cell function using Targeted Perturb-seq
Dewi Moonen – EMBL Heidelberg, Germany
09:50 – 10:05Pioneer transcription factors are associated with the modulation of DNA methylation patterns across cancers
Roza Berhanu-Lemma – NCMM, Norway
10:05 – 11:00Coffee Break and Meet the speakers
in ATC & Operon
ATC Foyer and Operon Foyer
11:00 – 11:20Dissecting intratumour heterogeneity of nodal B-cell lymphomas at the transcriptional, genetic and drug-response levels
Sascha Dietrich – MMPU, Germany
11:20 – 11:35Studying heterogeneity in the gene regulatory landscape of cancer
Tatiana Belova – NCMM, Norway
11:35 – 11:50Cellular mechanisms in schizophrenia – interplay of neurons and glial cells
Olli Pietiläinen – FIMM, Finland
11:50 – 12:00Break – change of conference rooms
12:00 – 12:30Closing Remarks and Poster Prize (joint session) ATC Auditorium

Young Investigators Meeting

The Young Investigators Meeting (YIM) is a 1.5-day event that takes place on 23–24 September 2022 at EMBL Heidelberg.

The meeting will bring together PhD students and postdoctoral fellows from EMBL and its partner institutes. It provides an excellent opportunity to meet peers from different institutes, discuss scientific discoveries, exchange ideas and experiences, get inspired and, most importantly, to have fun.

Programme:

YIM Programme – Day 1
Time (Europe/Berlin)Programme
13:30 – 14:45Registration and Lunch
14:45 – 15:00Opening remarks
15:00 – 16:00Mental Health talk
Martina Peskoller-Fuchs – EMBL Heidelberg, Germany
16:00 – 16:30Coffee Break
16:30 – 17:30Panel Discussion on career pathways after PhD or PostDoc – Part 1
Invited Speakers from Academia, Industry, Science Communication, Scientific Editing and Life Science Consulting
17:30 – 18:00Coffee Break
18:00 – 19:00Panel Discussion on career pathways after PhD or PostDoc – Part 2
19:00 – 19:30Speed dating
19:30Dinner
YIM Programme – Day 2
Time (Europe/Berlin)Programme
09:00 – 09:30Introductions, icebreakers and outlining of learning outcomes
09:30 – 10:15Why is development such an important Leadership competency?
How can you progress your own development and support the development of others?
Ally Dawkins – presentation
10:15 – 10:30Coffee Break
10:30 – 12:00Owning your development
Interactive workshop
12:00 – 13:00Lunch
13:00 – 14:30How to guide the development of others
Interactive workshop
14:30 – 15:00Wrap up, key insights and takeaways
15:00Event close and departure

There will be two workshops on the second day. The first workshop, “Owning Your Development“, will focus on giving you the skills to explore and shape your own personal development path. Through the workshop, various tools and techniques will be introduced to help you to get into the driving seat and to map out what comes next in your own development. You will also learn the steps needed to be proactive in shaping your own development path.

The second workshop, “How to Guide Development of Others”, will focus on how you can support less experienced team members to perform to the best of their ability. We believe feedback and coaching are essential skills for a healthy working relationship. In this workshop, you will learn a variety of feedback, coaching, and mentoring tools that will help you to support junior researchers in your team and build a supportive, high-performance, and highly engaging team.

Organisers:

EMBL

Lucia Malvina Margara

Luisa Abreu

Hubrecht Institute

Lorena Andrade Ruiz

DANDRITE

Lucie Woloszczuková

MIMS

Mohammed Rizwan Babu Sait

NCMM

Flore Kersten

FIMM

Yu Fu

CRG

Stephanie Rosswag

Eimear Byrne

HCEMM

Lili Kotmayer

VU-LSC

Lorenzo Camisi

Braincity

Bogna Badyra

Practical Information

Abstract submission

Only registered participants are eligible to submit an abstract.

After you have logged in and successfully registered, you will receive an email asking you to submit your abstract.  Click on the link provided and enter your abstract in the text box provided. Alternatively you can submit your abstract by clicking on the link on the confirmation page directly after registering. The same login credentials are used for both processes.

Please note:

Title: The title should not exceed 20 words. Only the first word of the title should start with a capital letter and the rest of the title should be in lowercase.

Authors and Affiliations: Please fill in the author’s details as requested in the online form. The compulsory details are: First Name, Last Name, Organisation Name (Affiliation or Company), Country and Email. Mark only one author as the role of First author and please don’t forget to indicate who will be presenting. The order of the authors will be listed as follows: First Author, Co-First Author (alphabetically if multiple), co-author(s) (in the order added by the submitter).

Presentation Types: When submitting your abstract, you can apply for a flash talk or poster presentation. A selection process will take place with the results announced 2-3 weeks after the abstract submission deadline.

Please check our FAQs pages for further information on how to submit an abstract.

Accommodation and Shuttles

As further changes in our events are possible due to COVID-19, you should book flights, trains and hotels with flexible options and favorable cancellation conditions.

Accommodation will need to be organised by each participant directly with the hotel. The hotels below have rooms on hold for participants until Tuesday, 23 August 2022, in some cases at special rates. Please quote the booking code TME22-01 and confirm the exact price of the room with the hotel directly.

Exzellenz Hotel & Boarding HouseHotel ibis HeidelbergISG Hotel 
Leonardo Hotel Heidelberg City CentrePremier Inn Heidelberg CityStaycity Aparthotel Heidelberg

Conference Shuttle Buses

Conference shuttle buses are free of charge for participants and depart from designated bus stops near the hotels to EMBL and back, mornings and evenings.

Please find the bus schedule here.

The bus stops for this conference are:

  • Star Inn Hotel (close to B&B Hotel and Main Train Station)
  • Kurfürsten-Anlage (close to Main Train Station)
  • Leonardo Hotel City Centre (Bergheimer Strasse)
  • Neckarmünzplatz
  • Peterskirche
  • Crowne Plaza
  • ISG Hotel

View Conference shuttle bus stops and hotels in a larger map. Please note that not every bus stop will be used for every event.

Further details

Address: EMBL, Meyerhofstraße 1, 69117 Heidelberg, Germany. For further information on getting to EMBL Heidelberg visit Public Transportation to the Venue. For information about accommodation and local transportation please refer to the FAQ page.

Onsite information

Catering

Our catering staff will prepare a wide variety of vegetarian meals, meat and fish dishes, soups, pasta, fresh fruit and vegetables, as well as a variety of desserts.

Please wear your badge at all times when serving yourself.

No food or drinks are allowed in the auditorium.

Charging lockers

There are lockers available next to the stairs leading down into the Auditorium. You will find some of those equipped with sockets to charge your smartphone/tablet etc.

Electricity and charging station

In most places the electricity is 220 volts AC (50 cycles). An adaptor and a plug that fits the German socket may be needed for your appliances/laptop (i.e. American, Japanese, etc.). A USB charging station for electronic devices is available at the registration desk.

EMBL merchandise

EMBL Merchandise is available on Mon – Thu (9 am – 12 pm). If you are interested in purchasing an EMBL souvenir (products presented in the glass display in the registration area), please ask at the registration desk for more information.

Health and safety notes

Please read EMBL’s COVID-19 safety policy for on-site events.
Do not smoke in any EMBL building.
Eating and drinking is prohibited in the Auditorium and all laboratories.
Do not enter any restricted areas or the laboratories unless instructed to do so.

If first aid is required …

  • The first aid room is located next to the ATC Registration Desk (room 10- 205).
  • Dial the Emergency number 222 from any EMBL internal phone only.
  • Where is the accident? What happened? How many injured?
  • Emergency number 06221-387 7821 from mobile phones.
  • Please report all accidents to the conference officer at the registration desk.

In case of fire …

  • Press the nearest fire alarm button or the Emergency number 222 from any internal phone.
  • A loud fire alarm will go off if an evacuation is required. On hearing the alarm leave the building immediately following the escape route and fire wardens and head to one of the meeting points
  • Do not use the lifts.

Beyond first aid…

Please remember to bring your own medication, if needed, to the conference. Note that the next pharmacy is a 4-minute drive from the EMBL, but for many medications you will be required to see a doctor to get a prescription.

Ensure in advance that your medical insurance will cover you during your visit in the event that you do need to see a doctor while in Heidelberg. In any case, the EMBL Course and Conference Office will assist you to get to the pharmacy and a doctor of your choice if necessary.

Internet

Wi-Fi is available everywhere on the premises (no password required), just log on to ATC-Guest. The eduroam network (secure, world-wide roaming access service developed for the international research and education community) is also available.

Lost and found

‘’Lost and Found’’ are kept at the registration desk until the end of the conference.

Luggage

There are lockers available on-site to store your luggage, which require a 2 EURO coin to operate. There is another luggage room on level E0, which is free to use but remains unlocked during the conference.

Nursing room

There is a nursing room available in the ATC Rooftop Lounge on level A29.

Photography

During the conference an EMBL Photographer may be taking photographs. If you would not like to appear in these, please inform the photographer or a member of the Course and Conference Office.

Printing

We can help print your boarding passes/train tickets. Please send it to events@embl.de and collect your print-outs at the registration desk.

Room for prayer, yoga and meditation

There is a room for prayer, mediation and yoga located on level E0 behind the Auditorium. Please be respectful of other participants using the room.

Sightseeing

A variety of activities in Heidelberg can be found on this website: www.heidelberg-marketing.com

Travel to and from the venue

During the event we provide conference shuttle busses to and from EMBL. In addition, there is the public bus 39A that serves the EMBL campus and taxis can be easily booked at any time. Information on the conference shuttle busses can be found on the individual event website and more detailed information on travelling to EMBL can be found on our Travel Information page.

Useful German expressions

EnglishGerman
HelloHallo
GoodbyeAuf Wiedersehen
Good morningGuten Morgen
Good afternoonGuten Tag
Good eveningGuten Abend
Good nightGute Nacht
I’m sorryTut mir leid
Excuse me…Entschuldigen Sie
How are you?Wie gehts?
I’m fine thanks. And you?Mir geht es gut , danke, und dir/Ihnen?
What is your nameWie heisst du? Wie heissen Sie?
My name isIch heisse
Do you speak EnglishSprechen Sie Englisch?
I don’t understandIch verstehe nicht
Please speak more slowlyKönnen Sie bitte langsamer sprechen
Thank youDankeschön
Where is the toilet?Wo ist die Toilette?
Please call me a taxiBitte rufen Sie mir ein Taxi
How do I get to….?Wie komme ich zum/zur…..?
A beer/two beers pleaseEin Bier/zwei Bier bitte
A glass of red/white wine pleaseEin Glas Rot/Weisswein bitte
The menu, pleaseDie Speisekarte, bitte
Is there a local speciality?Gibt es eine Spezialität aus dieser Gegend?
I’m VegetarianIch bin Vegetarier
It was deliciousEs war hervorragend
The bill, pleaseDie Rechnung, bitte
I have a headacheIch habe Kopfschmerzen
I have a sore throatIch habe Halsschmerzen
My stomach hurtsIch habe Magenschmerzen
I’m allergic toIch bin allergisch gegen
I need a doctor who speaks EnglishGibt es einen Arzt, der Englisch spricht?
COVID-19 related questions

COVID-19 information for on-site events at EMBL Heidelberg can be found in our COVID-19 FAQs.

Conference date: 21-23 September 2022

YIM date: 23-24 September 2022

Location: EMBL Heidelberg

Fees: free, open only to staff at EMBL and EMBL Partner Institutes


Contact:

Steering committee:

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