{"id":1067,"date":"2024-04-25T20:54:36","date_gmt":"2024-04-25T20:54:36","guid":{"rendered":"https:\/\/www.embl.org\/about\/info\/planetary-biology\/?page_id=1067"},"modified":"2026-01-07T15:37:00","modified_gmt":"2026-01-07T15:37:00","slug":"standflow","status":"publish","type":"page","link":"https:\/\/www.embl.org\/about\/info\/planetary-biology\/projects\/standflow\/","title":{"rendered":"STANDFLOW"},"content":{"rendered":"\n
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Towards a Standardised Data Management Workflow:\r\na Focused Knowledge Exchange for the Planetary Biology Community.\r\n<\/p>\n\n\n\n\n\n

<\/p>\n\n\n\n

\"\"
On the left, same species, collected in Kristineberg, imaged both on the confocal (far-left, calcofluor white labelling the theca in cyan) and scanning electron microscope (centre-left) imaged by Chandni Bhickta. On the centre-right, U-ExM of a dinoflagellate, labelled for tubulin (yellow) and DNA (pink) imaged by Felix Mikus. On the far right is a picture of training from the Brooksbank team.<\/figcaption><\/figure>\n\n\n\n

Large, multimodal projects to understand biodiversity at the molecular level require a degree of coordination and data integration never previously realised. Using a manageable but complex data set including samples from TREC, this project will:<\/p>\n\n\n\n

(A) Collaboratively define the data flow from sample to multimodal microscopy and -omics to open publication, through knowledge-exchange events and hackathons.<\/p>\n\n\n\n

(B) Develop an efficient workflow to automate this data flow, using green compute principles and reducing time to publication.<\/p>\n\n\n\n

(C) Create training resources supporting EMBL scientists and the wider research community to adopt the workflow and adapt it to their needs.<\/p>\n\n\n\n

<\/p>\n\n\n\n

Check out our webinar series recordings “How to organise and share my imaging data”<\/a><\/p>\n\n\n\n

<\/div>\n\n\n\n

Partners<\/h3>\n\n\n\n

Cath Broooksbank<\/a>, EMBL-EBI Training, Hinxton<\/p>\n\n\n\n

Dey group<\/a>, EMBL Heidelberg <\/p>\n\n\n\n

Bork group<\/a>, EMBL Heidelberg<\/p>\n\n\n\n

<\/p>\n\n\n\n

Collaborators<\/h3>\n\n\n\n

Hartley team<\/a>, EBI-EMBL Hinxton<\/p>\n\n\n\n

TREC <\/a><\/p>\n\n\n\n

<\/p>\n\n<\/div>\n<\/div>\n\n\n

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Project lead <\/h3>\n\n\n
\n \n \n
\n \"image\n \n

\n Yannick Schwab<\/a>\n <\/h3>\n \n

\n Team Leader and Head of Electron Microscopy Core Facility\n <\/p>\n \n \n \n \n \n \n \n \n Edit\n <\/a>\n <\/article>\n <\/div>\n\n\n\n

<\/div>\n\n\n\n

Imaging data manager for TREC<\/h3>\n\n\n
\n \n \n
\n \"image\n \n

\n Alexandra Zakieva<\/a>\n <\/h3>\n \n

\n Research Fellow (ARISE)\n <\/p>\n \n \n \n \n \n \n \n Edit\n <\/a>\n <\/article>\n <\/div>\n\n\n\n

<\/div>\n\n\n\n

Project contact email: standflow@embl.de<\/a><\/h3>\n\n\n\n

We make imaging data FAIR!<\/h4>\n\n<\/div>\n<\/div>\n<\/div>\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":2,"featured_media":0,"parent":714,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"template-title-left-aligned.php","meta":{"_acf_changed":false,"footnotes":""},"embl_taxonomy":[],"class_list":["post-1067","page","type-page","status-publish","hentry"],"acf":[],"embl_taxonomy_terms":[],"_links":{"self":[{"href":"https:\/\/www.embl.org\/about\/info\/planetary-biology\/wp-json\/wp\/v2\/pages\/1067","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.embl.org\/about\/info\/planetary-biology\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.embl.org\/about\/info\/planetary-biology\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.embl.org\/about\/info\/planetary-biology\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/www.embl.org\/about\/info\/planetary-biology\/wp-json\/wp\/v2\/comments?post=1067"}],"version-history":[{"count":15,"href":"https:\/\/www.embl.org\/about\/info\/planetary-biology\/wp-json\/wp\/v2\/pages\/1067\/revisions"}],"predecessor-version":[{"id":88895,"href":"https:\/\/www.embl.org\/about\/info\/planetary-biology\/wp-json\/wp\/v2\/pages\/1067\/revisions\/88895"}],"up":[{"embeddable":true,"href":"https:\/\/www.embl.org\/about\/info\/planetary-biology\/wp-json\/wp\/v2\/pages\/714"}],"wp:attachment":[{"href":"https:\/\/www.embl.org\/about\/info\/planetary-biology\/wp-json\/wp\/v2\/media?parent=1067"}],"wp:term":[{"taxonomy":"embl_taxonomy","embeddable":true,"href":"https:\/\/www.embl.org\/about\/info\/planetary-biology\/wp-json\/wp\/v2\/embl_taxonomy?post=1067"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}