{"id":44,"date":"2024-02-05T13:31:20","date_gmt":"2024-02-05T13:31:20","guid":{"rendered":"https:\/\/www.embl.org\/about\/info\/open-science\/?page_id=44"},"modified":"2024-06-20T12:49:16","modified_gmt":"2024-06-20T12:49:16","slug":"open-science-training-resources","status":"publish","type":"page","link":"https:\/\/www.embl.org\/about\/info\/open-science\/open-science-training-resources\/","title":{"rendered":"Open Science Training Resources"},"content":{"rendered":"\n<div class=\"vf-grid | vf-grid__col-3\"><div class=\"vf-grid__col--span-2\"><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<p>Multiple groups at EMBL design and deliver courses to train people in open science-related topics. The table below catalogs the links to relevant training materials, mapped to the audience they were initially designed for.<\/p>\n\n\n\n<p>Most of the content is widely applicable to anyone at EMBL. Feel free to contact these training groups to receive additional support. We encourage you to find the relevant topic and utilize the resources for your self-learning.<\/p>\n\n\n\n<h3 class=\"wp-block-heading\">Background<\/h3>\n\n\n\n<p>EMBL-EBI Training: <a href=\"https:\/\/docs.google.com\/presentation\/d\/1PNb4pLOvCXlFZc-veGT8bQkQnOIb02ZPFDKnleBnA2Q\/edit?usp=sharing\">Data managment \u2013 how to make the most of your data<\/a> (Introduction)<\/p>\n\n\n\n<p>EMBL-EBI Training: <a href=\"https:\/\/www.ebi.ac.uk\/training\/materials\/emblopenscienceworkshop2022\/programme\/day-1\/open-science-and-fair-data\/\">Open Science and FAIR data<\/a><\/p>\n\n\n\n<p>OSIM: <a href=\"https:\/\/docs.google.com\/presentation\/d\/1HkFqHjV97FU_8Dw6cWY6dJaYeFjrmesX\/edit?usp=sharing&amp;ouid=100712420568407711297&amp;rtpof=true&amp;sd=true\">Open Science and Open Access<\/a><\/p>\n\n\n\n<p>Bio-IT: <a href=\"https:\/\/docs.google.com\/presentation\/d\/1BxO2xoNKDIVMtphLMf-UlSt5yTU4wIHL\/edit#slide=id.p1\">Good enough practices in research computing<\/a> (introduction)<\/p>\n\n\n\n<p>Bio-IT: <a href=\"https:\/\/drive.google.com\/drive\/folders\/1XVGjoPwW8UkCWthf6ThIr55Wq-hCE5sp?usp=drive_link\">FAIR in (biological) practice<\/a> | <a href=\"https:\/\/carpentries-incubator.github.io\/fair-bio-practice\/\">original materials<\/a><\/p>\n\n\n\n<p>OSIM: <a href=\"https:\/\/docs.google.com\/presentation\/d\/1syH7_fbtfTbJiW7A00-wS2mMYfFxRTyrjcDj_3A7sH8\/edit#slide=id.p1\">Group Leader Introduction<\/a><\/p>\n\n\n\n<hr class=\"vf-divider\">\n\n\n\n<h3 class=\"wp-block-heading\">Availability of research output and publications<\/h3>\n\n\n\n<p>EMBL-EBI training \/ OSIM: <a href=\"https:\/\/www.ebi.ac.uk\/training\/materials\/emblopenscienceworkshop2022\/programme\/day-1\/open-publication-and-europe-pmc\/\">Open publication and Europe PMC<\/a>&nbsp;<\/p>\n\n\n\n<p>Bio-IT: <a href=\"https:\/\/drive.google.com\/drive\/folders\/1XVGjoPwW8UkCWthf6ThIr55Wq-hCE5sp?usp=drive_link\">FAIR in (biological) practice<\/a> | <a href=\"https:\/\/carpentries-incubator.github.io\/fair-bio-practice\/\">original materials<\/a> (chapter 13)<\/p>\n\n\n\n<p>EMBL-EBI Training: <a href=\"https:\/\/www.ebi.ac.uk\/training\/events\/open-access-publications-and-preprints\">Open access: publications and preprints<\/a><\/p>\n\n\n\n<hr class=\"vf-divider\">\n\n\n\n<h3 class=\"wp-block-heading\">Authorship \/ Attribution of credit \/ ORCIDs<\/h3>\n\n\n\n<p>EMBL-EBI training \/ OSIM: Research assessment and attribution of credit (EIPOD open science workshop): <a href=\"https:\/\/www.ebi.ac.uk\/training\/materials\/emblopenscienceworkshop2022\/programme\/day-1\/research-assessment-and-attribution-of-credit\/\">Research assessment and attribution of credit<\/a><\/p>\n\n\n\n<p>Bio-IT: <a href=\"https:\/\/docs.google.com\/presentation\/d\/1BxO2xoNKDIVMtphLMf-UlSt5yTU4wIHL\/edit#slide=id.p1\">Good enough practices in research computing<\/a> (Collaboration, Manuscripts chapters)<\/p>\n\n\n\n<hr class=\"vf-divider\">\n\n\n\n<h3 class=\"wp-block-heading\">Open Data and Data Management Plans<\/h3>\n\n\n\n<p>EMBL-EBI Training: <a href=\"https:\/\/docs.google.com\/presentation\/d\/1PNb4pLOvCXlFZc-veGT8bQkQnOIb02ZPFDKnleBnA2Q\/edit?usp=sharing\">Data management \u2013 how to make the most of your data<\/a> (Introduction)<\/p>\n\n\n\n<p>EMBL-EBI training: <a href=\"https:\/\/www.ebi.ac.uk\/training\/materials\/emblopenscienceworkshop2022\/pre-course-homework\/\">Open data and open software<\/a><\/p>\n\n\n\n<p>Bio-IT: <a href=\"https:\/\/docs.google.com\/presentation\/d\/1BxO2xoNKDIVMtphLMf-UlSt5yTU4wIHL\/edit#slide=id.p1\">Good enough practices in research computing<\/a> (Data Management, Project Organisation chapters)<\/p>\n\n\n\n<p>Bio-IT: <a href=\"https:\/\/drive.google.com\/drive\/folders\/1XVGjoPwW8UkCWthf6ThIr55Wq-hCE5sp?usp=drive_link\">FAIR in (biological) practice<\/a> | <a href=\"https:\/\/carpentries-incubator.github.io\/fair-bio-practice\/\">original materials<\/a> (chapters 5-10)<\/p>\n\n\n\n<p>EMBL-EBI training: <a href=\"https:\/\/www.ebi.ac.uk\/training\/events\/open-access-lets-talk-about-open-access-open-data-and-open-software\/\">Open access: Let\u2019s talk about open access, open data and open software<\/a>&nbsp;<\/p>\n\n\n\n<p>OSIM: <a href=\"https:\/\/docs.google.com\/presentation\/d\/1uRPQ1JyrVc9NU_Z5Ln05dJdGFGiScxiX\/edit?usp=sharing&amp;ouid=100712420568407711297&amp;rtpof=true&amp;sd=true\">Introduction to Data Management Plans<\/a><\/p>\n\n\n\n<hr class=\"vf-divider\">\n\n\n\n<h3 class=\"wp-block-heading\">Software<\/h3>\n\n\n\n<p>Bio-IT: <a href=\"https:\/\/git.embl.de\/grp-bio-it-workshops\/workflow-management-systems-comparison\">Workflow management systems comparison<\/a><\/p>\n\n\n\n<p>Bio-IT: <a href=\"https:\/\/coderefinery.github.io\/reproducible-research\/\">Reproducible research<\/a><\/p>\n\n\n\n<p>Bio-IT: <a href=\"https:\/\/docs.google.com\/presentation\/d\/1i0Yrfd4699wcjeTYmexjFUS1xgzhWnrNXqtbk6ZZOxM\/edit#slide=id.g1494f98e6ca_0_344\">Open software<\/a><\/p>\n\n\n\n<p>Bio-IT: <a href=\"https:\/\/docs.google.com\/presentation\/d\/1737C4tF888WkcPRCZu3hscQdRGp9NqP-XBTq5NLu_U8\/edit#slide=id.g13be42cb284_0_170\">Data Management Plans<\/a><\/p>\n\n\n\n<p>Bio-IT: <a href=\"https:\/\/docs.google.com\/presentation\/d\/1BxO2xoNKDIVMtphLMf-UlSt5yTU4wIHL\/edit#slide=id.p1\">Good enough practices in research computing<\/a> (Code and Software, Track changes chapters)<\/p>\n\n\n\n<p>Bio-IT: <a href=\"https:\/\/drive.google.com\/drive\/folders\/1XVGjoPwW8UkCWthf6ThIr55Wq-hCE5sp?usp=drive_link\">FAIR in (biological) practice<\/a> | <a href=\"https:\/\/carpentries-incubator.github.io\/fair-bio-practice\/\">original materials<\/a> (chapters 10-12)<\/p>\n\n\n\n<p>EMBL-EBI training: <a href=\"https:\/\/www.ebi.ac.uk\/training\/events\/open-access-why-build-open-source-software-and-how-do-it-successfully\/\">Open access: Why build open source software and how to do it successfully<\/a><\/p>\n\n\n\n<p>EMBL-EBI training: <a href=\"https:\/\/www.ebi.ac.uk\/training\/events\/environmental-impact-computational-biology\/\">Environmental impact of computational biology<\/a><\/p>\n\n\n\n<hr class=\"vf-divider\">\n\n\n\n<h3 class=\"wp-block-heading\">Research Assessment<\/h3>\n\n\n\n<p>EMBL-EBI training \/ OSIM: <a href=\"https:\/\/www.ebi.ac.uk\/training\/materials\/emblopenscienceworkshop2022\/programme\/day-1\/research-assessment-and-attribution-of-credit\/\">Research assessment and attribution of credit<\/a> (EIPOD open science workshop)<\/p>\n\n\n\n<hr class=\"vf-divider\">\n\n\n\n<h3 class=\"wp-block-heading\">Acknowledgement of funding support<\/h3>\n\n\n\n<p>For this specific section of the Open Science Policy, please refer to the <a href=\"https:\/\/www.embl.org\/internal-information\/office-for-scientific-information-management\/open-science-support\/implementation-guidelines-for-the-embl-open-science-and-open-access-policy-ip-71\/\">Implementation Guidelines<\/a><br>Contact OSIM or the Grants Office for support on this matter.<\/p>\n\n\n\n<hr class=\"vf-divider\">\n\n\n\n<p>The training modules are conducted by the following groups at EMBL:<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Office for Scientific Information Management. Contact: OSIM<\/li>\n\n\n\n<li>The&nbsp;<a href=\"https:\/\/www.ebi.ac.uk\/training\/\">EMBL-EBI training<\/a>. Contact:&nbsp;<a href=\"mailto:courses@ebi.ac.uk\">courses@ebi.ac.uk<\/a><\/li>\n\n\n\n<li>The<a href=\"https:\/\/www.embl.org\/about\/info\/postdoctoral-programme\/fellowship-programmes\/\"> Postdoctoral Fellows Program<\/a> \u2013 EIPOD. Contact: EIPOD<\/li>\n\n\n\n<li>The <a href=\"https:\/\/www.embl.org\/about\/info\/embl-international-phd-programme\/#contact\">Internal Scientific Training<\/a> team. Contact: Graduate Training<\/li>\n\n\n\n<li>The <a href=\"https:\/\/www.embl.org\/about\/info\/arise\/\">ARISE <\/a>fellows program. Contact: ARISE<\/li>\n\n\n\n<li><a href=\"https:\/\/bio-it.embl.de\/\">Bio-IT<\/a>, a computational biology community initiative. Contact: Bio-IT<\/li>\n<\/ul>\n\n<\/div>\n<\/div>\n\n\n<div class=\"\"><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<\/div>\n<\/div>\n<\/div>\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"template-title-left-aligned.php","meta":{"_acf_changed":false,"footnotes":""},"embl_taxonomy":[],"class_list":["post-44","page","type-page","status-publish","hentry"],"acf":[],"embl_taxonomy_terms":[],"_links":{"self":[{"href":"https:\/\/www.embl.org\/about\/info\/open-science\/wp-json\/wp\/v2\/pages\/44","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.embl.org\/about\/info\/open-science\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.embl.org\/about\/info\/open-science\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.embl.org\/about\/info\/open-science\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.embl.org\/about\/info\/open-science\/wp-json\/wp\/v2\/comments?post=44"}],"version-history":[{"count":6,"href":"https:\/\/www.embl.org\/about\/info\/open-science\/wp-json\/wp\/v2\/pages\/44\/revisions"}],"predecessor-version":[{"id":1161,"href":"https:\/\/www.embl.org\/about\/info\/open-science\/wp-json\/wp\/v2\/pages\/44\/revisions\/1161"}],"wp:attachment":[{"href":"https:\/\/www.embl.org\/about\/info\/open-science\/wp-json\/wp\/v2\/media?parent=44"}],"wp:term":[{"taxonomy":"embl_taxonomy","embeddable":true,"href":"https:\/\/www.embl.org\/about\/info\/open-science\/wp-json\/wp\/v2\/embl_taxonomy?post=44"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}